HEADER TRANSCRIPTION 22-SEP-14 4REF TITLE CRYSTAL STRUCTURE OF TR3 LBD_L449W IN COMPLEX WITH MOLECULE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 351-598; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1, NUCLEAR HORMONE RECEPTOR COMPND 6 NUR/77, NUR77, ORPHAN NUCLEAR RECEPTOR HMR, ORPHAN NUCLEAR RECEPTOR COMPND 7 TR3, ST-59, TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GFRP1, HMR, NAK1, NR4A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LBD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR F.W.LI,Q.X.CAI,A.Z.LI,X.Y.TIAN,W.J.WANG,W.YUAN,P.P.HOU,Q.WU,T.W.LIN REVDAT 3 20-MAR-24 4REF 1 REMARK SEQADV REVDAT 2 22-NOV-17 4REF 1 REMARK REVDAT 1 09-SEP-15 4REF 0 JRNL AUTH W.J.WANG,Y.WANG,P.P.HOU,F.W.LI,B.ZHOU,H.Z.CHEN,X.L.BIAN, JRNL AUTH 2 Q.X.CAI,Y.Z.XING,J.P.HE,H.ZHANG,P.Q.HUANG,T.LIN,Q.WU JRNL TITL INDUCTION OF AUTOPHAGIC DEATH IN CANCER CELLS BY AGONIZING JRNL TITL 2 TR3 AND ATTENUATING AKT2 ACTIVITY JRNL REF CHEM.BIOL. V. 22 1040 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 26235054 JRNL DOI 10.1016/J.CHEMBIOL.2015.06.023 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 40721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3765 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3704 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5095 ; 1.872 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8522 ; 1.330 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.854 ;23.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;13.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4135 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 833 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 3.557 ; 3.436 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1859 ; 3.556 ; 3.435 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2318 ; 5.000 ; 5.118 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 4.721 ; 3.804 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 31 267 A 31 267 12906 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4REF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, GLYCEROL, PH REMARK 280 4.2, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.03950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.42150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.03950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.42150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 PRO B 215 REMARK 465 GLN B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 31 CB REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLN B 57 CD OE1 NE2 REMARK 470 PHE B 64 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 209 N GLY B 213 1.55 REMARK 500 NH2 ARG B 191 OE1 GLU B 194 1.80 REMARK 500 NH1 ARG B 87 O HOH B 449 1.90 REMARK 500 O ALA B 209 CA GLY B 213 2.05 REMARK 500 O HOH B 417 O HOH B 544 2.15 REMARK 500 OE2 GLU B 84 NZ LYS B 88 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 123 CD ARG B 123 NE -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 123 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP B 168 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 123 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 31 -98.54 106.26 REMARK 500 LYS B 66 170.56 65.86 REMARK 500 PRO B 266 33.94 -73.72 REMARK 500 SER A 222 -34.70 72.19 REMARK 500 PRO A 266 73.25 -69.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3N0 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4REE RELATED DB: PDB REMARK 900 RELATED ID: 4RE8 RELATED DB: PDB REMARK 900 RELATED ID: 4WHF RELATED DB: PDB REMARK 900 RELATED ID: 4WHG RELATED DB: PDB DBREF 4REF B 20 267 UNP P22736 NR4A1_HUMAN 351 598 DBREF 4REF A 20 267 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 4REF TRP B 118 UNP P22736 LEU 449 ENGINEERED MUTATION SEQADV 4REF LEU B 268 UNP P22736 EXPRESSION TAG SEQADV 4REF GLU B 269 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 270 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 271 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 272 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 273 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 274 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS B 275 UNP P22736 EXPRESSION TAG SEQADV 4REF TRP A 118 UNP P22736 LEU 449 ENGINEERED MUTATION SEQADV 4REF LEU A 268 UNP P22736 EXPRESSION TAG SEQADV 4REF GLU A 269 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 270 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 271 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 272 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 273 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 274 UNP P22736 EXPRESSION TAG SEQADV 4REF HIS A 275 UNP P22736 EXPRESSION TAG SEQRES 1 B 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 B 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 B 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 B 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 B 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 B 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 B 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SER SEQRES 8 B 256 ALA PHE LEU GLU LEU PHE ILE TRP ARG LEU ALA TYR ARG SEQRES 9 B 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 B 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 B 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 B 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 B 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 B 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 B 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 B 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 B 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 B 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 B 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 B 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 A 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 A 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 A 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 A 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 A 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 A 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SER SEQRES 8 A 256 ALA PHE LEU GLU LEU PHE ILE TRP ARG LEU ALA TYR ARG SEQRES 9 A 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 A 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 A 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 A 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 A 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 A 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 A 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 A 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 A 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 A 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 A 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 A 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS HET GOL B 301 6 HET GOL A 301 6 HET 3N0 A 302 16 HET GOL A 303 6 HET GOL A 304 6 HETNAM GOL GLYCEROL HETNAM 3N0 1-(3,4,5-TRIHYDROXYPHENYL)HEXAN-1-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 3N0 C12 H16 O4 FORMUL 8 HOH *315(H2 O) HELIX 1 1 ALA B 31 ASP B 43 1 13 HELIX 2 2 SER B 47 LEU B 51 5 5 HELIX 3 3 ASP B 68 GLY B 81 1 14 HELIX 4 4 SER B 82 LYS B 92 1 11 HELIX 5 5 GLY B 95 LEU B 99 5 5 HELIX 6 6 SER B 100 SER B 124 1 25 HELIX 7 7 LYS B 125 GLU B 128 5 4 HELIX 8 8 ARG B 141 GLY B 149 1 9 HELIX 9 9 ASP B 150 LEU B 166 1 17 HELIX 10 10 ASP B 168 ILE B 181 1 14 HELIX 11 11 GLU B 189 GLY B 213 1 25 HELIX 12 12 SER B 219 GLY B 226 1 8 HELIX 13 13 GLY B 226 ASP B 249 1 24 HELIX 14 14 PRO B 254 THR B 264 1 11 HELIX 15 15 ASN A 32 ASP A 43 1 12 HELIX 16 16 SER A 47 LEU A 51 5 5 HELIX 17 17 ASP A 68 LYS A 92 1 25 HELIX 18 18 GLY A 95 LEU A 99 5 5 HELIX 19 19 SER A 100 SER A 124 1 25 HELIX 20 20 LYS A 125 GLU A 128 5 4 HELIX 21 21 ARG A 141 GLY A 149 1 9 HELIX 22 22 ASP A 150 LEU A 165 1 16 HELIX 23 23 ASP A 168 ILE A 181 1 14 HELIX 24 24 GLU A 189 GLY A 213 1 25 HELIX 25 25 LEU A 224 GLY A 226 5 3 HELIX 26 26 LYS A 227 ASP A 249 1 23 HELIX 27 27 PRO A 254 THR A 264 1 11 SHEET 1 A 2 LYS B 130 ILE B 132 0 SHEET 2 A 2 VAL B 138 HIS B 140 -1 O LEU B 139 N LEU B 131 SHEET 1 B 2 LYS A 130 ILE A 132 0 SHEET 2 B 2 VAL A 138 HIS A 140 -1 O LEU A 139 N LEU A 131 CISPEP 1 PRO B 30 ALA B 31 0 -16.95 SITE 1 AC1 10 HIS B 41 SER B 44 GLY B 45 PRO B 46 SITE 2 AC1 10 ARG B 119 ARG B 123 HOH B 414 HOH B 420 SITE 3 AC1 10 HOH B 447 HOH B 486 SITE 1 AC2 10 HIS A 41 SER A 44 GLY A 45 PRO A 46 SITE 2 AC2 10 ARG A 119 ARG A 123 HOH A 413 HOH A 446 SITE 3 AC2 10 HOH A 545 HOH A 547 SITE 1 AC3 9 GLU A 58 LEU A 175 LEU A 178 VAL A 179 SITE 2 AC3 9 ILE A 181 THR A 182 GLN A 197 LEU A 225 SITE 3 AC3 9 HOH A 440 SITE 1 AC4 6 LYS A 125 PRO A 126 GLY A 127 HIS A 185 SITE 2 AC4 6 HOH A 466 HOH A 552 SITE 1 AC5 7 ASP A 150 ASP A 153 ARG A 191 GLU A 194 SITE 2 AC5 7 GLU A 195 ASN A 198 HOH A 490 CRYST1 74.200 76.843 128.079 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007808 0.00000