HEADER PROTEIN BINDING 24-SEP-14 4RF1 TITLE CRYSTAL STRUCTURE OF THE MIDDLE-EAST RESPIRATORY SYNDROME CORONAVIRUS TITLE 2 PAPAIN-LIKE PROTEASE IN COMPLEX WITH UBIQUITIN (SPACE GROUP P63) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF1AB PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1480-1803; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-60S RIBOSOMAL PROTEIN L40; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 1-75; COMPND 10 SYNONYM: CEP52, UBIQUITIN A-52 RESIDUE RIBOSOMAL PROTEIN FUSION COMPND 11 PRODUCT 1, UBIQUITIN, 60S RIBOSOMAL PROTEIN L40; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C JORDAN-N3/2012; SOURCE 3 ORGANISM_TAXID: 1306931; SOURCE 4 GENE: ORF1AB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: UBA52, UBCEP2; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC RIBBON, DEUBIQUITINASE, PAPAIN-LIKE PROTEASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.A.BAILEY-ELKIN,G.G.JOHNSON,B.L.MARK REVDAT 3 14-JAN-15 4RF1 1 JRNL REVDAT 2 29-OCT-14 4RF1 1 JRNL REVDAT 1 22-OCT-14 4RF1 0 JRNL AUTH B.A.BAILEY-ELKIN,R.C.KNAAP,G.G.JOHNSON,T.J.DALEBOUT, JRNL AUTH 2 D.K.NINABER,P.B.VAN KASTEREN,P.J.BREDENBEEK,E.J.SNIJDER, JRNL AUTH 3 M.KIKKERT,B.L.MARK JRNL TITL CRYSTAL STRUCTURE OF THE MIDDLE EAST RESPIRATORY SYNDROME JRNL TITL 2 CORONAVIRUS (MERS-COV) PAPAIN-LIKE PROTEASE BOUND TO JRNL TITL 3 UBIQUITIN FACILITATES TARGETED DISRUPTION OF JRNL TITL 4 DEUBIQUITINATING ACTIVITY TO DEMONSTRATE ITS ROLE IN INNATE JRNL TITL 5 IMMUNE SUPPRESSION. JRNL REF J.BIOL.CHEM. V. 289 34667 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25320088 JRNL DOI 10.1074/JBC.M114.609644 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 33472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2384 - 5.1796 0.98 2329 142 0.1711 0.1841 REMARK 3 2 5.1796 - 4.1121 0.99 2273 143 0.1525 0.1895 REMARK 3 3 4.1121 - 3.5926 0.98 2245 145 0.1715 0.2049 REMARK 3 4 3.5926 - 3.2642 0.99 2264 149 0.1972 0.2347 REMARK 3 5 3.2642 - 3.0303 0.99 2248 144 0.2268 0.2293 REMARK 3 6 3.0303 - 2.8517 0.99 2262 141 0.2350 0.2800 REMARK 3 7 2.8517 - 2.7089 0.99 2259 144 0.2402 0.2770 REMARK 3 8 2.7089 - 2.5910 0.99 2237 140 0.2450 0.3023 REMARK 3 9 2.5910 - 2.4913 0.99 2213 140 0.2568 0.3122 REMARK 3 10 2.4913 - 2.4053 0.99 2244 144 0.2718 0.2850 REMARK 3 11 2.4053 - 2.3301 0.99 2243 142 0.2700 0.3063 REMARK 3 12 2.3301 - 2.2635 0.98 2213 141 0.2732 0.3445 REMARK 3 13 2.2635 - 2.2039 0.98 2237 141 0.2808 0.3052 REMARK 3 14 2.2039 - 2.1500 0.99 2209 140 0.2906 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3103 REMARK 3 ANGLE : 0.528 4212 REMARK 3 CHIRALITY : 0.020 504 REMARK 3 PLANARITY : 0.002 532 REMARK 3 DIHEDRAL : 10.722 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1483:1803 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5261 53.9990 40.7422 REMARK 3 T TENSOR REMARK 3 T11: 0.2856 T22: 0.6494 REMARK 3 T33: 0.4509 T12: 0.0763 REMARK 3 T13: 0.0296 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.6713 L22: 0.6576 REMARK 3 L33: 3.2218 L12: -0.0991 REMARK 3 L13: -1.1314 L23: 0.3679 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.4582 S13: 0.1827 REMARK 3 S21: 0.0817 S22: 0.0001 S23: 0.0479 REMARK 3 S31: 0.1072 S32: -0.8398 S33: -0.0546 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND (RESID 1:75 OR RESID 101:101 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4319 39.4589 43.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.8358 T22: 1.2547 REMARK 3 T33: 0.8835 T12: -0.3983 REMARK 3 T13: 0.1360 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.5135 L22: 1.8649 REMARK 3 L33: 1.2545 L12: -0.0310 REMARK 3 L13: -0.5346 L23: -0.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.1940 S12: 0.1266 S13: -0.7182 REMARK 3 S21: 0.3010 S22: 0.1966 S23: 0.6474 REMARK 3 S31: 1.2167 S32: -1.3516 S33: 0.0630 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-14. REMARK 100 THE RCSB ID CODE IS RCSB087264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28280 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1 M TRISODIUM CITRATE, REMARK 280 20% ISOPROPANOL, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.99550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.99550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.99550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2147 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1480 REMARK 465 GLN A 1481 REMARK 465 GLN A 1482 REMARK 465 GLY A 1767 REMARK 465 GLY A 1768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1529 CG CD CE NZ REMARK 470 LYS A1547 CG CD CE NZ REMARK 470 MET A1703 SD CE REMARK 470 SER A1739 OG REMARK 470 ASP A1743 CG OD1 OD2 REMARK 470 LYS A1766 CG CD CE NZ REMARK 470 SER A1782 OG REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 PHE B 4 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 SER B 20 OG REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 GLN B 40 CG CD OE1 NE2 REMARK 470 LYS B 48 CD CE NZ REMARK 470 ASN B 60 CG OD1 ND2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1733 NZ LYS A 1785 1.99 REMARK 500 OE2 GLU A 1670 NH1 ARG A 1715 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1511 -57.32 -133.93 REMARK 500 ASP A1523 34.73 -95.33 REMARK 500 LYS A1581 -15.12 70.60 REMARK 500 SER A1588 131.64 -170.73 REMARK 500 ALA A1741 75.49 59.74 REMARK 500 ALA A1756 -168.40 -123.80 REMARK 500 THR A1789 -79.25 -116.92 REMARK 500 CYS A1802 79.52 57.62 REMARK 500 GLN B 62 -136.56 -143.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2103 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A2121 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH A2122 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A2134 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A2136 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A2163 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A2164 DISTANCE = 9.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1707 SG REMARK 620 2 CYS A1672 SG 113.4 REMARK 620 3 CYS A1709 SG 102.2 109.7 REMARK 620 4 CYS A1675 SG 95.9 126.2 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 1902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 1903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 1904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 1905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 1906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CN B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4REZ RELATED DB: PDB REMARK 900 RELATED ID: 4RF0 RELATED DB: PDB DBREF 4RF1 A 1480 1803 UNP M4STU1 M4STU1_9BETC 1480 1803 DBREF 4RF1 B 1 75 UNP P62987 RL40_HUMAN 1 75 SEQRES 1 A 324 THR GLN GLN LEU THR ILE GLU VAL LEU VAL THR VAL ASP SEQRES 2 A 324 GLY VAL ASN PHE ARG THR VAL VAL LEU ASN ASN LYS ASN SEQRES 3 A 324 THR TYR ARG SER GLN LEU GLY CYS VAL PHE PHE ASN GLY SEQRES 4 A 324 ALA ASP ILE SER ASP THR ILE PRO ASP GLU LYS GLN ASN SEQRES 5 A 324 GLY HIS SER LEU TYR LEU ALA ASP ASN LEU THR ALA ASP SEQRES 6 A 324 GLU THR LYS ALA LEU LYS GLU LEU TYR GLY PRO VAL ASP SEQRES 7 A 324 PRO THR PHE LEU HIS ARG PHE TYR SER LEU LYS ALA ALA SEQRES 8 A 324 VAL HIS GLY TRP LYS MET VAL VAL CYS ASP LYS VAL ARG SEQRES 9 A 324 SER LEU LYS LEU SER ASP ASN ASN CYS TYR LEU ASN ALA SEQRES 10 A 324 VAL ILE MET THR LEU ASP LEU LEU LYS ASP ILE LYS PHE SEQRES 11 A 324 VAL ILE PRO ALA LEU GLN HIS ALA PHE MET LYS HIS LYS SEQRES 12 A 324 GLY GLY ASP SER THR ASP PHE ILE ALA LEU ILE MET ALA SEQRES 13 A 324 TYR GLY ASN CYS THR PHE GLY ALA PRO ASP ASP ALA SER SEQRES 14 A 324 ARG LEU LEU HIS THR VAL LEU ALA LYS ALA GLU LEU CYS SEQRES 15 A 324 CYS SER ALA ARG MET VAL TRP ARG GLU TRP CYS ASN VAL SEQRES 16 A 324 CYS GLY ILE LYS ASP VAL VAL LEU GLN GLY LEU LYS ALA SEQRES 17 A 324 CYS CYS TYR VAL GLY VAL GLN THR VAL GLU ASP LEU ARG SEQRES 18 A 324 ALA ARG MET THR TYR VAL CYS GLN CYS GLY GLY GLU ARG SEQRES 19 A 324 HIS ARG GLN LEU VAL GLU HIS THR THR PRO TRP LEU LEU SEQRES 20 A 324 LEU SER GLY THR PRO ASN GLU LYS LEU VAL THR THR SER SEQRES 21 A 324 THR ALA PRO ASP PHE VAL ALA PHE ASN VAL PHE GLN GLY SEQRES 22 A 324 ILE GLU THR ALA VAL GLY HIS TYR VAL HIS ALA ARG LEU SEQRES 23 A 324 LYS GLY GLY LEU ILE LEU LYS PHE ASP SER GLY THR VAL SEQRES 24 A 324 SER LYS THR SER ASP TRP LYS CYS LYS VAL THR ASP VAL SEQRES 25 A 324 LEU PHE PRO GLY GLN LYS TYR SER SER ASP CYS ASN SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET ZN A1901 1 HET PGO A1902 5 HET PGO A1903 5 HET PGO A1904 5 HET PGO A1905 5 HET PGO A1906 5 HET 3CN B 101 4 HETNAM ZN ZINC ION HETNAM PGO S-1,2-PROPANEDIOL HETNAM 3CN 3-AMINOPROPANE FORMUL 3 ZN ZN 2+ FORMUL 4 PGO 5(C3 H8 O2) FORMUL 9 3CN C3 H9 N FORMUL 10 HOH *176(H2 O) HELIX 1 1 THR A 1506 LEU A 1511 1 6 HELIX 2 2 ASP A 1527 ASN A 1531 5 5 HELIX 3 3 THR A 1542 GLY A 1554 1 13 HELIX 4 4 THR A 1559 VAL A 1571 1 13 HELIX 5 5 HIS A 1572 TRP A 1574 5 3 HELIX 6 6 ASN A 1591 ASP A 1602 1 12 HELIX 7 7 ILE A 1611 GLY A 1624 1 14 HELIX 8 8 SER A 1626 GLY A 1637 1 12 HELIX 9 9 ASP A 1646 ALA A 1656 1 11 HELIX 10 10 LEU A 1685 ALA A 1687 5 3 HELIX 11 11 THR A 1695 ARG A 1700 1 6 HELIX 12 12 THR B 22 ASP B 32 1 11 HELIX 13 13 PRO B 37 ASP B 39 5 3 HELIX 14 14 LEU B 56 ASN B 60 5 5 SHEET 1 A 5 ARG A1497 ASN A1502 0 SHEET 2 A 5 THR A1484 THR A1490 -1 N ILE A1485 O LEU A1501 SHEET 3 A 5 SER A1534 LEU A1537 1 O LEU A1535 N LEU A1488 SHEET 4 A 5 VAL A1514 PHE A1516 -1 N PHE A1515 O TYR A1536 SHEET 5 A 5 ALA A1519 ASP A1520 -1 O ALA A1519 N PHE A1516 SHEET 1 B 2 MET A1576 CYS A1579 0 SHEET 2 B 2 VAL A1582 LEU A1585 -1 O SER A1584 N VAL A1577 SHEET 1 C 2 ILE A1607 PHE A1609 0 SHEET 2 C 2 ALA A1658 LEU A1660 -1 O GLU A1659 N LYS A1608 SHEET 1 D 4 GLY A1676 GLN A1683 0 SHEET 2 D 4 ARG A1665 CYS A1672 -1 N GLU A1670 O LYS A1678 SHEET 3 D 4 GLU A1712 THR A1722 -1 O THR A1721 N ARG A1665 SHEET 4 D 4 MET A1703 VAL A1706 -1 N MET A1703 O ARG A1715 SHEET 1 E 4 GLY A1676 GLN A1683 0 SHEET 2 E 4 ARG A1665 CYS A1672 -1 N GLU A1670 O LYS A1678 SHEET 3 E 4 GLU A1712 THR A1722 -1 O THR A1721 N ARG A1665 SHEET 4 E 4 GLN A1796 SER A1799 -1 O TYR A1798 N HIS A1720 SHEET 1 F 7 CYS A1689 VAL A1691 0 SHEET 2 F 7 LEU A1725 THR A1737 1 O SER A1728 N TYR A1690 SHEET 3 F 7 ASP A1783 PHE A1793 -1 O PHE A1793 N LEU A1725 SHEET 4 F 7 ALA A1746 GLN A1751 -1 N ALA A1746 O LEU A1792 SHEET 5 F 7 HIS A1759 ARG A1764 -1 O HIS A1759 N GLN A1751 SHEET 6 F 7 ILE A1770 ASP A1774 -1 O PHE A1773 N HIS A1762 SHEET 7 F 7 THR A1777 THR A1781 -1 O THR A1777 N ASP A1774 SHEET 1 G 5 THR B 12 GLU B 16 0 SHEET 2 G 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 G 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 G 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 G 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A1707 ZN ZN A1901 1555 1555 2.38 LINK SG CYS A1672 ZN ZN A1901 1555 1555 2.41 LINK SG CYS A1709 ZN ZN A1901 1555 1555 2.43 LINK SG CYS A1675 ZN ZN A1901 1555 1555 2.47 LINK SG CYS A1592 CA 3CN B 101 1555 1555 1.82 LINK C GLY B 75 ND 3CN B 101 1555 1555 1.45 SITE 1 AC1 4 CYS A1672 CYS A1675 CYS A1707 CYS A1709 SITE 1 AC2 4 TRP A1574 GLY A1624 SER A1626 THR A1627 SITE 1 AC3 6 ALA A1658 GLU A1659 LEU A1660 GLY A1684 SITE 2 AC3 6 LEU A1685 LYS A1686 SITE 1 AC4 3 TYR A1565 LYS A1568 HOH A2067 SITE 1 AC5 2 ASN A1517 TYR A1536 SITE 1 AC6 1 ARG A1715 SITE 1 AC7 5 ASN A1590 CYS A1592 GLY A1758 HIS A1759 SITE 2 AC7 5 GLY B 75 CRYST1 136.770 136.770 57.991 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007312 0.004221 0.000000 0.00000 SCALE2 0.000000 0.008443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017244 0.00000