data_4RFP # _entry.id 4RFP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RFP RCSB RCSB087288 WWPDB D_1000087288 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-10-15 _pdbx_database_PDB_obs_spr.pdb_id 4RFP _pdbx_database_PDB_obs_spr.replace_pdb_id 4H0Q _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RFP _pdbx_database_status.recvd_initial_deposition_date 2014-09-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zeng, F.' 1 'Niu, L.' 2 'Li, X.' 3 'Teng, M.' 4 # _citation.id primary _citation.title 'Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zeng, F.' 1 primary 'Niu, L.' 2 primary 'Li, X.' 3 primary 'Teng, M.' 4 # _cell.entry_id 4RFP _cell.length_a 72.177 _cell.length_b 85.712 _cell.length_c 38.888 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RFP _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Acidic phospholipase A2 5' 13734.407 2 3.1.1.4 ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 4 ? ? ? ? 3 water nat water 18.015 184 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'svPLA2, PLA2-V, Phosphatidylcholine 2-acylhydrolase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NLMQFELLIMKVAGRSGIVWYSDYGCFCGKGGHGRPQDATDRCCFVHDCCYGKVNGCDPKEDFYRYSSNNGDIVCEANNP CTKEICECDKAAAICFRDNKDTYDNKYWNIPMESCQESEPC ; _entity_poly.pdbx_seq_one_letter_code_can ;NLMQFELLIMKVAGRSGIVWYSDYGCFCGKGGHGRPQDATDRCCFVHDCCYGKVNGCDPKEDFYRYSSNNGDIVCEANNP CTKEICECDKAAAICFRDNKDTYDNKYWNIPMESCQESEPC ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 MET n 1 4 GLN n 1 5 PHE n 1 6 GLU n 1 7 LEU n 1 8 LEU n 1 9 ILE n 1 10 MET n 1 11 LYS n 1 12 VAL n 1 13 ALA n 1 14 GLY n 1 15 ARG n 1 16 SER n 1 17 GLY n 1 18 ILE n 1 19 VAL n 1 20 TRP n 1 21 TYR n 1 22 SER n 1 23 ASP n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 PHE n 1 28 CYS n 1 29 GLY n 1 30 LYS n 1 31 GLY n 1 32 GLY n 1 33 HIS n 1 34 GLY n 1 35 ARG n 1 36 PRO n 1 37 GLN n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 PHE n 1 46 VAL n 1 47 HIS n 1 48 ASP n 1 49 CYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 LYS n 1 54 VAL n 1 55 ASN n 1 56 GLY n 1 57 CYS n 1 58 ASP n 1 59 PRO n 1 60 LYS n 1 61 GLU n 1 62 ASP n 1 63 PHE n 1 64 TYR n 1 65 ARG n 1 66 TYR n 1 67 SER n 1 68 SER n 1 69 ASN n 1 70 ASN n 1 71 GLY n 1 72 ASP n 1 73 ILE n 1 74 VAL n 1 75 CYS n 1 76 GLU n 1 77 ALA n 1 78 ASN n 1 79 ASN n 1 80 PRO n 1 81 CYS n 1 82 THR n 1 83 LYS n 1 84 GLU n 1 85 ILE n 1 86 CYS n 1 87 GLU n 1 88 CYS n 1 89 ASP n 1 90 LYS n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 ILE n 1 95 CYS n 1 96 PHE n 1 97 ARG n 1 98 ASP n 1 99 ASN n 1 100 LYS n 1 101 ASP n 1 102 THR n 1 103 TYR n 1 104 ASP n 1 105 ASN n 1 106 LYS n 1 107 TYR n 1 108 TRP n 1 109 ASN n 1 110 ILE n 1 111 PRO n 1 112 MET n 1 113 GLU n 1 114 SER n 1 115 CYS n 1 116 GLN n 1 117 GLU n 1 118 SER n 1 119 GLU n 1 120 PRO n 1 121 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Chinese green tree viper' _entity_src_nat.pdbx_organism_scientific 'Trimeresurus stejnegeri' _entity_src_nat.pdbx_ncbi_taxonomy_id 39682 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA2A5_TRIST _struct_ref.pdbx_db_accession P82896 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NLMQFELLIMKVAGRSGIVWYSDYGCFCGKGGHGRPQDATDRCCFVHDCCYGKVTECDPKMDFYRYSSNNGDIVCEANNP CTKEICECDKAAAICFRDNKDTYDNKYWNIPMEGCQEESEPC ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RFP A 1 ? 121 ? P82896 1 ? 122 ? 1 121 2 1 4RFP B 1 ? 121 ? P82896 1 ? 122 ? 1 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RFP ASN A 55 ? UNP P82896 THR 55 CONFLICT 55 1 1 4RFP GLY A 56 ? UNP P82896 GLU 56 CONFLICT 56 2 1 4RFP GLU A 61 ? UNP P82896 MET 61 CONFLICT 61 3 1 4RFP SER A 114 ? UNP P82896 GLY 114 CONFLICT 114 4 1 4RFP ? A ? ? UNP P82896 GLU 117 DELETION ? 5 2 4RFP ASN B 55 ? UNP P82896 THR 55 CONFLICT 55 6 2 4RFP GLY B 56 ? UNP P82896 GLU 56 CONFLICT 56 7 2 4RFP GLU B 61 ? UNP P82896 MET 61 CONFLICT 61 8 2 4RFP SER B 114 ? UNP P82896 GLY 114 CONFLICT 114 9 2 4RFP ? B ? ? UNP P82896 GLU 117 DELETION ? 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RFP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 287.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '12% PEG8000, 0.1 M sodium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 287K, temperature 287.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2011-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97915 # _reflns.entry_id 4RFP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.6 _reflns.number_obs 32661 _reflns.number_all 33086 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.pdbx_Rsym_value 0.329 _reflns_shell.meanI_over_sigI_obs 7.5 _reflns_shell.pdbx_redundancy 11.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1659 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RFP _refine.ls_number_reflns_obs 30586 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 98.71 _refine.ls_R_factor_obs 0.18424 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18298 _refine.ls_R_factor_R_free 0.20858 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1625 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 24.248 _refine.aniso_B[1][1] 2.74 _refine.aniso_B[2][2] -0.49 _refine.aniso_B[3][3] -2.25 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1VAP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.090 _refine.overall_SU_ML 0.055 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.538 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1902 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 2108 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.019 ? 1982 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 1713 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.278 1.942 ? 2673 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.789 3.000 ? 3981 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.205 5.000 ? 242 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39.448 25.000 ? 104 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.497 15.000 ? 321 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8.857 15.000 ? 10 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.079 0.200 ? 257 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 2297 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 465 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.331 2.204 ? 968 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.321 2.202 ? 967 ? 'X-RAY DIFFRACTION' r_mcangle_it 2.164 3.305 ? 1207 ? 'X-RAY DIFFRACTION' r_mcangle_other 2.167 3.307 ? 1208 ? 'X-RAY DIFFRACTION' r_scbond_it 1.985 2.476 ? 1014 ? 'X-RAY DIFFRACTION' r_scbond_other 1.983 2.476 ? 1014 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 3.067 3.577 ? 1466 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 4.885 18.405 ? 2494 ? 'X-RAY DIFFRACTION' r_long_range_B_other 4.885 18.415 ? 2495 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 2250 _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.217 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4RFP _struct.title 'Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom' _struct.pdbx_descriptor 'Acidic phospholipase A2 5 (E.C.3.1.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RFP _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'alpha-helix, HYDROLASE, glycerophospholipid, venom gland' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 1 ? GLY A 14 ? ASN A 1 GLY A 14 1 ? 14 HELX_P HELX_P2 2 SER A 16 ? TYR A 21 ? SER A 16 TYR A 21 1 ? 6 HELX_P HELX_P3 3 ASP A 38 ? LYS A 53 ? ASP A 38 LYS A 53 1 ? 16 HELX_P HELX_P4 4 ASN A 79 ? ASN A 99 ? ASN A 79 ASN A 99 1 ? 21 HELX_P HELX_P5 5 LYS A 100 ? TYR A 103 ? LYS A 100 TYR A 103 5 ? 4 HELX_P HELX_P6 6 ASP A 104 ? TRP A 108 ? ASP A 104 TRP A 108 5 ? 5 HELX_P HELX_P7 7 PRO A 111 ? CYS A 115 ? PRO A 111 CYS A 115 5 ? 5 HELX_P HELX_P8 8 LEU B 2 ? GLY B 14 ? LEU B 2 GLY B 14 1 ? 13 HELX_P HELX_P9 9 SER B 16 ? TYR B 21 ? SER B 16 TYR B 21 1 ? 6 HELX_P HELX_P10 10 ASP B 38 ? LYS B 53 ? ASP B 38 LYS B 53 1 ? 16 HELX_P HELX_P11 11 ASN B 79 ? ASN B 99 ? ASN B 79 ASN B 99 1 ? 21 HELX_P HELX_P12 12 LYS B 100 ? TYR B 103 ? LYS B 100 TYR B 103 5 ? 4 HELX_P HELX_P13 13 ASP B 104 ? TRP B 108 ? ASP B 104 TRP B 108 5 ? 5 HELX_P HELX_P14 14 PRO B 111 ? GLN B 116 ? PRO B 111 GLN B 116 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 26 A CYS 115 1_555 ? ? ? ? ? ? ? 2.059 ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 28 A CYS 44 1_555 ? ? ? ? ? ? ? 2.059 ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 43 A CYS 95 1_555 ? ? ? ? ? ? ? 2.036 ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 121 SG ? ? A CYS 49 A CYS 121 1_555 ? ? ? ? ? ? ? 2.049 ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 50 A CYS 88 1_555 ? ? ? ? ? ? ? 2.045 ? disulf6 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 57 A CYS 81 1_555 ? ? ? ? ? ? ? 2.052 ? disulf7 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 75 A CYS 86 1_555 ? ? ? ? ? ? ? 2.062 ? disulf8 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 26 B CYS 115 1_555 ? ? ? ? ? ? ? 2.053 ? disulf9 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? B CYS 28 B CYS 44 1_555 ? ? ? ? ? ? ? 2.062 ? disulf10 disulf ? ? B CYS 43 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 43 B CYS 95 1_555 ? ? ? ? ? ? ? 2.045 ? disulf11 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 121 SG ? ? B CYS 49 B CYS 121 1_555 ? ? ? ? ? ? ? 2.021 ? disulf12 disulf ? ? B CYS 50 SG ? ? ? 1_555 B CYS 88 SG ? ? B CYS 50 B CYS 88 1_555 ? ? ? ? ? ? ? 2.033 ? disulf13 disulf ? ? B CYS 57 SG ? ? ? 1_555 B CYS 81 SG ? ? B CYS 57 B CYS 81 1_555 ? ? ? ? ? ? ? 2.032 ? disulf14 disulf ? ? B CYS 75 SG ? ? ? 1_555 B CYS 86 SG ? ? B CYS 75 B CYS 86 1_555 ? ? ? ? ? ? ? 2.071 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 66 ? ASN A 69 ? TYR A 66 ASN A 69 A 2 ASP A 72 ? CYS A 75 ? ASP A 72 CYS A 75 B 1 TYR B 66 ? SER B 67 ? TYR B 66 SER B 67 B 2 VAL B 74 ? CYS B 75 ? VAL B 74 CYS B 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 67 ? N SER A 67 O VAL A 74 ? O VAL A 74 B 1 2 N SER B 67 ? N SER B 67 O VAL B 74 ? O VAL B 74 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG A 201' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG B 201' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PEG B 202' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PEG B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 15 ? ARG A 15 . ? 1_555 ? 2 AC1 2 TRP A 20 ? TRP A 20 . ? 1_555 ? 3 AC2 2 ARG B 15 ? ARG B 15 . ? 1_555 ? 4 AC2 2 PEG E . ? PEG B 202 . ? 1_555 ? 5 AC3 6 ALA B 77 ? ALA B 77 . ? 1_554 ? 6 AC3 6 ASN B 79 ? ASN B 79 . ? 1_554 ? 7 AC3 6 PRO B 80 ? PRO B 80 . ? 1_554 ? 8 AC3 6 LYS B 83 ? LYS B 83 . ? 1_554 ? 9 AC3 6 PEG D . ? PEG B 201 . ? 1_555 ? 10 AC3 6 HOH H . ? HOH B 391 . ? 1_555 ? 11 AC4 5 ASP B 101 ? ASP B 101 . ? 1_555 ? 12 AC4 5 THR B 102 ? THR B 102 . ? 1_555 ? 13 AC4 5 TYR B 103 ? TYR B 103 . ? 1_555 ? 14 AC4 5 ASP B 104 ? ASP B 104 . ? 1_555 ? 15 AC4 5 HOH H . ? HOH B 391 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RFP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RFP _atom_sites.fract_transf_matrix[1][1] 0.013855 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011667 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025715 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 CYS 121 121 121 CYS CYS A . n B 1 1 ASN 1 1 1 ASN ASN B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 MET 3 3 3 MET MET B . n B 1 4 GLN 4 4 4 GLN GLN B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 MET 10 10 10 MET MET B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 TRP 20 20 20 TRP TRP B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 TYR 24 24 24 TYR TYR B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 CYS 26 26 26 CYS CYS B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 HIS 33 33 33 HIS HIS B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 ARG 35 35 35 ARG ARG B . n B 1 36 PRO 36 36 36 PRO PRO B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 ASP 41 41 41 ASP ASP B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 CYS 43 43 43 CYS CYS B . n B 1 44 CYS 44 44 44 CYS CYS B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 HIS 47 47 47 HIS HIS B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 CYS 49 49 49 CYS CYS B . n B 1 50 CYS 50 50 50 CYS CYS B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 CYS 57 57 57 CYS CYS B . n B 1 58 ASP 58 58 58 ASP ASP B . n B 1 59 PRO 59 59 59 PRO PRO B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 ASP 62 62 62 ASP ASP B . n B 1 63 PHE 63 63 63 PHE PHE B . n B 1 64 TYR 64 64 64 TYR TYR B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 TYR 66 66 66 TYR TYR B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 SER 68 68 68 SER SER B . n B 1 69 ASN 69 69 69 ASN ASN B . n B 1 70 ASN 70 70 70 ASN ASN B . n B 1 71 GLY 71 71 71 GLY GLY B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 CYS 75 75 75 CYS CYS B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 ASN 78 78 78 ASN ASN B . n B 1 79 ASN 79 79 79 ASN ASN B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 LYS 83 83 83 LYS LYS B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 CYS 86 86 86 CYS CYS B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 CYS 88 88 88 CYS CYS B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 ALA 93 93 93 ALA ALA B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 PHE 96 96 96 PHE PHE B . n B 1 97 ARG 97 97 97 ARG ARG B . n B 1 98 ASP 98 98 98 ASP ASP B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 THR 102 102 102 THR THR B . n B 1 103 TYR 103 103 103 TYR TYR B . n B 1 104 ASP 104 104 104 ASP ASP B . n B 1 105 ASN 105 105 105 ASN ASN B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 TYR 107 107 107 TYR TYR B . n B 1 108 TRP 108 108 108 TRP TRP B . n B 1 109 ASN 109 109 109 ASN ASN B . n B 1 110 ILE 110 110 110 ILE ILE B . n B 1 111 PRO 111 111 111 PRO PRO B . n B 1 112 MET 112 112 112 MET MET B . n B 1 113 GLU 113 113 113 GLU GLU B . n B 1 114 SER 114 114 114 SER SER B . n B 1 115 CYS 115 115 115 CYS CYS B . n B 1 116 GLN 116 116 116 GLN GLN B . n B 1 117 GLU 117 117 117 GLU GLU B . n B 1 118 SER 118 118 118 SER SER B . n B 1 119 GLU 119 119 119 GLU GLU B . n B 1 120 PRO 120 120 120 PRO PRO B . n B 1 121 CYS 121 121 121 CYS CYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2160 ? 1 MORE -1 ? 1 'SSA (A^2)' 12820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-10-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0073 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 23 ? ? -151.51 49.54 2 1 ALA A 77 ? ? -93.22 46.94 3 1 ASN A 79 ? ? -166.20 119.18 4 1 GLN A 116 ? ? -119.25 -115.92 5 1 ASP B 23 ? ? -153.04 48.95 6 1 LYS B 30 ? ? -138.03 -104.70 7 1 ALA B 77 ? ? -91.58 47.23 8 1 ASN B 79 ? ? -166.74 119.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B PEG 202 ? C3 ? E PEG 1 C3 2 1 N 1 B PEG 202 ? C4 ? E PEG 1 C4 3 1 N 1 B PEG 202 ? O4 ? E PEG 1 O4 4 1 N 1 B PEG 203 ? C3 ? F PEG 1 C3 5 1 N 1 B PEG 203 ? C4 ? F PEG 1 C4 6 1 N 1 B PEG 203 ? O4 ? F PEG 1 O4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG 1 201 1 PEG PEG A . D 2 PEG 1 201 1 PEG PEG B . E 2 PEG 1 202 1 PEG PEG B . F 2 PEG 1 203 1 PEG PEG B . G 3 HOH 1 301 3 HOH HOH A . G 3 HOH 2 302 4 HOH HOH A . G 3 HOH 3 303 8 HOH HOH A . G 3 HOH 4 304 9 HOH HOH A . G 3 HOH 5 305 10 HOH HOH A . G 3 HOH 6 306 11 HOH HOH A . G 3 HOH 7 307 13 HOH HOH A . G 3 HOH 8 308 20 HOH HOH A . G 3 HOH 9 309 21 HOH HOH A . G 3 HOH 10 310 24 HOH HOH A . G 3 HOH 11 311 25 HOH HOH A . G 3 HOH 12 312 26 HOH HOH A . G 3 HOH 13 313 27 HOH HOH A . G 3 HOH 14 314 29 HOH HOH A . G 3 HOH 15 315 30 HOH HOH A . G 3 HOH 16 316 32 HOH HOH A . G 3 HOH 17 317 33 HOH HOH A . G 3 HOH 18 318 35 HOH HOH A . G 3 HOH 19 319 36 HOH HOH A . G 3 HOH 20 320 40 HOH HOH A . G 3 HOH 21 321 41 HOH HOH A . G 3 HOH 22 322 46 HOH HOH A . G 3 HOH 23 323 48 HOH HOH A . G 3 HOH 24 324 52 HOH HOH A . G 3 HOH 25 325 53 HOH HOH A . G 3 HOH 26 326 54 HOH HOH A . G 3 HOH 27 327 55 HOH HOH A . G 3 HOH 28 328 68 HOH HOH A . G 3 HOH 29 329 70 HOH HOH A . G 3 HOH 30 330 72 HOH HOH A . G 3 HOH 31 331 73 HOH HOH A . G 3 HOH 32 332 74 HOH HOH A . G 3 HOH 33 333 75 HOH HOH A . G 3 HOH 34 334 77 HOH HOH A . G 3 HOH 35 335 78 HOH HOH A . G 3 HOH 36 336 84 HOH HOH A . G 3 HOH 37 337 85 HOH HOH A . G 3 HOH 38 338 86 HOH HOH A . G 3 HOH 39 339 87 HOH HOH A . G 3 HOH 40 340 88 HOH HOH A . G 3 HOH 41 341 89 HOH HOH A . G 3 HOH 42 342 90 HOH HOH A . G 3 HOH 43 343 91 HOH HOH A . G 3 HOH 44 344 98 HOH HOH A . G 3 HOH 45 345 105 HOH HOH A . G 3 HOH 46 346 106 HOH HOH A . G 3 HOH 47 347 107 HOH HOH A . G 3 HOH 48 348 108 HOH HOH A . G 3 HOH 49 349 110 HOH HOH A . G 3 HOH 50 350 114 HOH HOH A . G 3 HOH 51 351 115 HOH HOH A . G 3 HOH 52 352 119 HOH HOH A . G 3 HOH 53 353 120 HOH HOH A . G 3 HOH 54 354 121 HOH HOH A . G 3 HOH 55 355 122 HOH HOH A . G 3 HOH 56 356 123 HOH HOH A . G 3 HOH 57 357 126 HOH HOH A . G 3 HOH 58 358 127 HOH HOH A . G 3 HOH 59 359 129 HOH HOH A . G 3 HOH 60 360 130 HOH HOH A . G 3 HOH 61 361 131 HOH HOH A . G 3 HOH 62 362 132 HOH HOH A . G 3 HOH 63 363 134 HOH HOH A . G 3 HOH 64 364 136 HOH HOH A . G 3 HOH 65 365 137 HOH HOH A . G 3 HOH 66 366 138 HOH HOH A . G 3 HOH 67 367 139 HOH HOH A . G 3 HOH 68 368 143 HOH HOH A . G 3 HOH 69 369 144 HOH HOH A . G 3 HOH 70 370 149 HOH HOH A . G 3 HOH 71 371 151 HOH HOH A . G 3 HOH 72 372 152 HOH HOH A . G 3 HOH 73 373 153 HOH HOH A . G 3 HOH 74 374 155 HOH HOH A . G 3 HOH 75 375 157 HOH HOH A . G 3 HOH 76 376 158 HOH HOH A . G 3 HOH 77 377 159 HOH HOH A . G 3 HOH 78 378 163 HOH HOH A . G 3 HOH 79 379 165 HOH HOH A . G 3 HOH 80 380 168 HOH HOH A . G 3 HOH 81 381 169 HOH HOH A . G 3 HOH 82 382 174 HOH HOH A . G 3 HOH 83 383 175 HOH HOH A . G 3 HOH 84 384 176 HOH HOH A . G 3 HOH 85 385 177 HOH HOH A . G 3 HOH 86 386 178 HOH HOH A . G 3 HOH 87 387 180 HOH HOH A . G 3 HOH 88 388 182 HOH HOH A . G 3 HOH 89 389 183 HOH HOH A . G 3 HOH 90 390 185 HOH HOH A . G 3 HOH 91 391 188 HOH HOH A . H 3 HOH 1 301 1 HOH HOH B . H 3 HOH 2 302 2 HOH HOH B . H 3 HOH 3 303 5 HOH HOH B . H 3 HOH 4 304 6 HOH HOH B . H 3 HOH 5 305 7 HOH HOH B . H 3 HOH 6 306 12 HOH HOH B . H 3 HOH 7 307 14 HOH HOH B . H 3 HOH 8 308 15 HOH HOH B . H 3 HOH 9 309 16 HOH HOH B . H 3 HOH 10 310 17 HOH HOH B . H 3 HOH 11 311 18 HOH HOH B . H 3 HOH 12 312 19 HOH HOH B . H 3 HOH 13 313 22 HOH HOH B . H 3 HOH 14 314 23 HOH HOH B . H 3 HOH 15 315 28 HOH HOH B . H 3 HOH 16 316 31 HOH HOH B . H 3 HOH 17 317 34 HOH HOH B . H 3 HOH 18 318 37 HOH HOH B . H 3 HOH 19 319 38 HOH HOH B . H 3 HOH 20 320 39 HOH HOH B . H 3 HOH 21 321 42 HOH HOH B . H 3 HOH 22 322 43 HOH HOH B . H 3 HOH 23 323 44 HOH HOH B . H 3 HOH 24 324 45 HOH HOH B . H 3 HOH 25 325 47 HOH HOH B . H 3 HOH 26 326 49 HOH HOH B . H 3 HOH 27 327 50 HOH HOH B . H 3 HOH 28 328 51 HOH HOH B . H 3 HOH 29 329 56 HOH HOH B . H 3 HOH 30 330 57 HOH HOH B . H 3 HOH 31 331 58 HOH HOH B . H 3 HOH 32 332 59 HOH HOH B . H 3 HOH 33 333 60 HOH HOH B . H 3 HOH 34 334 61 HOH HOH B . H 3 HOH 35 335 62 HOH HOH B . H 3 HOH 36 336 63 HOH HOH B . H 3 HOH 37 337 64 HOH HOH B . H 3 HOH 38 338 65 HOH HOH B . H 3 HOH 39 339 66 HOH HOH B . H 3 HOH 40 340 67 HOH HOH B . H 3 HOH 41 341 69 HOH HOH B . H 3 HOH 42 342 71 HOH HOH B . H 3 HOH 43 343 76 HOH HOH B . H 3 HOH 44 344 79 HOH HOH B . H 3 HOH 45 345 80 HOH HOH B . H 3 HOH 46 346 81 HOH HOH B . H 3 HOH 47 347 82 HOH HOH B . H 3 HOH 48 348 83 HOH HOH B . H 3 HOH 49 349 92 HOH HOH B . H 3 HOH 50 350 93 HOH HOH B . H 3 HOH 51 351 94 HOH HOH B . H 3 HOH 52 352 95 HOH HOH B . H 3 HOH 53 353 96 HOH HOH B . H 3 HOH 54 354 97 HOH HOH B . H 3 HOH 55 355 99 HOH HOH B . H 3 HOH 56 356 101 HOH HOH B . H 3 HOH 57 357 102 HOH HOH B . H 3 HOH 58 358 103 HOH HOH B . H 3 HOH 59 359 104 HOH HOH B . H 3 HOH 60 360 109 HOH HOH B . H 3 HOH 61 361 111 HOH HOH B . H 3 HOH 62 362 112 HOH HOH B . H 3 HOH 63 363 113 HOH HOH B . H 3 HOH 64 364 116 HOH HOH B . H 3 HOH 65 365 117 HOH HOH B . H 3 HOH 66 366 118 HOH HOH B . H 3 HOH 67 367 124 HOH HOH B . H 3 HOH 68 368 125 HOH HOH B . H 3 HOH 69 369 128 HOH HOH B . H 3 HOH 70 370 133 HOH HOH B . H 3 HOH 71 371 135 HOH HOH B . H 3 HOH 72 372 140 HOH HOH B . H 3 HOH 73 373 141 HOH HOH B . H 3 HOH 74 374 142 HOH HOH B . H 3 HOH 75 375 145 HOH HOH B . H 3 HOH 76 376 146 HOH HOH B . H 3 HOH 77 377 147 HOH HOH B . H 3 HOH 78 378 148 HOH HOH B . H 3 HOH 79 379 150 HOH HOH B . H 3 HOH 80 380 156 HOH HOH B . H 3 HOH 81 381 160 HOH HOH B . H 3 HOH 82 382 161 HOH HOH B . H 3 HOH 83 383 162 HOH HOH B . H 3 HOH 84 384 167 HOH HOH B . H 3 HOH 85 385 170 HOH HOH B . H 3 HOH 86 386 171 HOH HOH B . H 3 HOH 87 387 172 HOH HOH B . H 3 HOH 88 388 173 HOH HOH B . H 3 HOH 89 389 179 HOH HOH B . H 3 HOH 90 390 181 HOH HOH B . H 3 HOH 91 391 184 HOH HOH B . H 3 HOH 92 392 186 HOH HOH B . H 3 HOH 93 393 187 HOH HOH B . #