HEADER TRANSFERASE 28-SEP-14 4RFV TITLE STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC CYS556ALA TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL ENZYME CYSN/CYSC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 424-612); COMPND 5 SYNONYM: SULFATE ADENYLYLTRANSFERASE SUBUNIT 1, ATP-SULFURYLASE LARGE COMPND 6 SUBUNIT, SULFATE ADENYLATE TRANSFERASE, SAT, ADENYLYL-SULFATE KINASE, COMPND 7 APS KINASE, ATP ADENOSINE-5'-PHOSPHOSULFATE 3'-PHOSPHOTRANSFERASE; COMPND 8 EC: 2.7.7.4, 2.7.1.25; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: CYSN, CYSNC, MTCY373.05, RV1286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS APS KINASE DOMAIN, INACTIVE MUTANT, SULFUR ASSIMILATION, CYSTEINE KEYWDS 2 BIOSYNTHESIS, REDOX REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.POYRAZ,K.BRUNNER,R.SCHNELL,G.SCHNEIDER REVDAT 3 20-SEP-23 4RFV 1 REMARK SEQADV REVDAT 2 08-APR-15 4RFV 1 JRNL REVDAT 1 28-JAN-15 4RFV 0 JRNL AUTH O.POYRAZ,K.BRUNNER,B.LOHKAMP,H.AXELSSON,L.G.HAMMARSTROM, JRNL AUTH 2 R.SCHNELL,G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURES OF THE KINASE DOMAIN OF THE JRNL TITL 2 SULFATE-ACTIVATING COMPLEX IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF PLOS ONE V. 10 21494 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25807013 JRNL DOI 10.1371/JOURNAL.PONE.0121494 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2266 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2201 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3069 ; 1.548 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5058 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;33.531 ;23.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;13.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2564 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 510 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1149 ; 1.849 ; 2.106 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1148 ; 1.846 ; 2.106 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1435 ; 2.801 ; 3.136 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1436 ; 2.800 ; 3.136 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1117 ; 2.688 ; 2.511 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1112 ; 2.663 ; 2.509 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1627 ; 4.177 ; 3.626 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2697 ; 6.563 ;18.749 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2569 ; 6.306 ;17.925 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91842 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 59.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BZP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350, 0.2M AMMONIUM NITRATE, REMARK 280 5MM MAGNESIUM CHLORIDE, 5MM ADP, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.28000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.28000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.08350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.57900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.08350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.57900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.28000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.08350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.57900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.28000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.08350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.57900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 864 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 741 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 MET A 423 REMARK 465 SER A 424 REMARK 465 PRO A 425 REMARK 465 ASN A 426 REMARK 465 THR A 427 REMARK 465 VAL A 428 REMARK 465 ARG A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 SER A 432 REMARK 465 LEU A 433 REMARK 465 VAL A 434 REMARK 465 THR A 435 REMARK 465 ALA A 436 REMARK 465 GLN A 437 REMARK 465 ASP A 438 REMARK 465 ARG A 439 REMARK 465 PRO A 552 REMARK 465 LEU A 553 REMARK 465 GLN A 554 REMARK 465 ASP A 555 REMARK 465 SER A 556 REMARK 465 GLU A 557 REMARK 465 ARG A 558 REMARK 465 ARG A 559 REMARK 465 ASP A 560 REMARK 465 PRO A 561 REMARK 465 LYS A 562 REMARK 465 GLY A 563 REMARK 465 LEU A 564 REMARK 465 TYR A 565 REMARK 465 ALA A 566 REMARK 465 LYS A 567 REMARK 465 ALA A 568 REMARK 465 ARG A 569 REMARK 465 ALA A 570 REMARK 465 GLY A 571 REMARK 465 GLU A 572 REMARK 465 ILE A 573 REMARK 465 THR A 574 REMARK 465 HIS A 575 REMARK 465 PHE A 576 REMARK 465 THR A 577 REMARK 465 GLY A 578 REMARK 465 ILE A 579 REMARK 465 ASP A 580 REMARK 465 SER A 581 REMARK 465 GLY B 420 REMARK 465 SER B 421 REMARK 465 HIS B 422 REMARK 465 MET B 423 REMARK 465 SER B 424 REMARK 465 PRO B 425 REMARK 465 ASN B 426 REMARK 465 THR B 427 REMARK 465 VAL B 428 REMARK 465 ARG B 429 REMARK 465 HIS B 430 REMARK 465 ARG B 431 REMARK 465 SER B 432 REMARK 465 LEU B 433 REMARK 465 VAL B 434 REMARK 465 THR B 435 REMARK 465 ALA B 436 REMARK 465 GLN B 437 REMARK 465 ASP B 438 REMARK 465 ARG B 439 REMARK 465 PRO B 440 REMARK 465 SER B 452 REMARK 465 PRO B 552 REMARK 465 LEU B 553 REMARK 465 GLN B 554 REMARK 465 ASP B 555 REMARK 465 SER B 556 REMARK 465 GLU B 557 REMARK 465 ARG B 558 REMARK 465 ARG B 559 REMARK 465 ASP B 560 REMARK 465 PRO B 561 REMARK 465 LYS B 562 REMARK 465 GLY B 563 REMARK 465 LEU B 564 REMARK 465 TYR B 565 REMARK 465 ALA B 566 REMARK 465 LYS B 567 REMARK 465 ALA B 568 REMARK 465 ARG B 569 REMARK 465 ALA B 570 REMARK 465 GLY B 571 REMARK 465 GLU B 572 REMARK 465 ILE B 573 REMARK 465 THR B 574 REMARK 465 HIS B 575 REMARK 465 PHE B 576 REMARK 465 THR B 577 REMARK 465 GLY B 578 REMARK 465 ILE B 579 REMARK 465 ASP B 580 REMARK 465 SER B 581 REMARK 465 PRO B 582 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 789 O HOH B 803 2.12 REMARK 500 O HOH B 727 O HOH B 749 2.15 REMARK 500 O HOH A 831 O HOH A 866 2.16 REMARK 500 O HOH A 813 O HOH A 846 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 917 O HOH A 917 3554 1.98 REMARK 500 O HOH A 871 O HOH B 740 8455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 454 1.60 -68.73 REMARK 500 ASN B 588 56.45 -140.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BZQ RELATED DB: PDB REMARK 900 RELATED ID: 4BZX RELATED DB: PDB REMARK 900 RELATED ID: 4BZP RELATED DB: PDB DBREF 4RFV A 424 612 UNP P9WNM5 CYSNC_MYCTU 424 612 DBREF 4RFV B 424 612 UNP P9WNM5 CYSNC_MYCTU 424 612 SEQADV 4RFV GLY A 420 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV SER A 421 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV HIS A 422 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV MET A 423 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV SER A 556 UNP P9WNM5 CYS 556 ENGINEERED MUTATION SEQADV 4RFV GLY B 420 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV SER B 421 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV HIS B 422 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV MET B 423 UNP P9WNM5 EXPRESSION TAG SEQADV 4RFV SER B 556 UNP P9WNM5 CYS 556 ENGINEERED MUTATION SEQRES 1 A 193 GLY SER HIS MET SER PRO ASN THR VAL ARG HIS ARG SER SEQRES 2 A 193 LEU VAL THR ALA GLN ASP ARG PRO PRO ARG GLY LYS THR SEQRES 3 A 193 VAL TRP PHE THR GLY LEU SER GLY SER GLY LYS SER SER SEQRES 4 A 193 VAL ALA MET LEU VAL GLU ARG LYS LEU LEU GLU LYS GLY SEQRES 5 A 193 ILE SER ALA TYR VAL LEU ASP GLY ASP ASN LEU ARG HIS SEQRES 6 A 193 GLY LEU ASN ALA ASP LEU GLY PHE SER MET ALA ASP ARG SEQRES 7 A 193 ALA GLU ASN LEU ARG ARG LEU SER HIS VAL ALA THR LEU SEQRES 8 A 193 LEU ALA ASP CYS GLY HIS LEU VAL LEU VAL PRO ALA ILE SEQRES 9 A 193 SER PRO LEU ALA GLU HIS ARG ALA LEU ALA ARG LYS VAL SEQRES 10 A 193 HIS ALA ASP ALA GLY ILE ASP PHE PHE GLU VAL PHE CYS SEQRES 11 A 193 ASP THR PRO LEU GLN ASP SER GLU ARG ARG ASP PRO LYS SEQRES 12 A 193 GLY LEU TYR ALA LYS ALA ARG ALA GLY GLU ILE THR HIS SEQRES 13 A 193 PHE THR GLY ILE ASP SER PRO TYR GLN ARG PRO LYS ASN SEQRES 14 A 193 PRO ASP LEU ARG LEU THR PRO ASP ARG SER ILE ASP GLU SEQRES 15 A 193 GLN ALA GLN GLU VAL ILE ASP LEU LEU GLU SER SEQRES 1 B 193 GLY SER HIS MET SER PRO ASN THR VAL ARG HIS ARG SER SEQRES 2 B 193 LEU VAL THR ALA GLN ASP ARG PRO PRO ARG GLY LYS THR SEQRES 3 B 193 VAL TRP PHE THR GLY LEU SER GLY SER GLY LYS SER SER SEQRES 4 B 193 VAL ALA MET LEU VAL GLU ARG LYS LEU LEU GLU LYS GLY SEQRES 5 B 193 ILE SER ALA TYR VAL LEU ASP GLY ASP ASN LEU ARG HIS SEQRES 6 B 193 GLY LEU ASN ALA ASP LEU GLY PHE SER MET ALA ASP ARG SEQRES 7 B 193 ALA GLU ASN LEU ARG ARG LEU SER HIS VAL ALA THR LEU SEQRES 8 B 193 LEU ALA ASP CYS GLY HIS LEU VAL LEU VAL PRO ALA ILE SEQRES 9 B 193 SER PRO LEU ALA GLU HIS ARG ALA LEU ALA ARG LYS VAL SEQRES 10 B 193 HIS ALA ASP ALA GLY ILE ASP PHE PHE GLU VAL PHE CYS SEQRES 11 B 193 ASP THR PRO LEU GLN ASP SER GLU ARG ARG ASP PRO LYS SEQRES 12 B 193 GLY LEU TYR ALA LYS ALA ARG ALA GLY GLU ILE THR HIS SEQRES 13 B 193 PHE THR GLY ILE ASP SER PRO TYR GLN ARG PRO LYS ASN SEQRES 14 B 193 PRO ASP LEU ARG LEU THR PRO ASP ARG SER ILE ASP GLU SEQRES 15 B 193 GLN ALA GLN GLU VAL ILE ASP LEU LEU GLU SER HET PO4 A 701 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *254(H2 O) HELIX 1 1 GLY A 455 LYS A 470 1 16 HELIX 2 2 ASP A 478 ARG A 483 1 6 HELIX 3 3 SER A 493 CYS A 514 1 22 HELIX 4 4 LEU A 526 GLY A 541 1 16 HELIX 5 5 SER A 598 SER A 612 1 15 HELIX 6 6 GLY B 455 LYS B 470 1 16 HELIX 7 7 ASP B 478 HIS B 484 1 7 HELIX 8 8 SER B 493 CYS B 514 1 22 HELIX 9 9 LEU B 526 GLY B 541 1 16 HELIX 10 10 SER B 598 GLU B 611 1 14 SHEET 1 A 5 ALA A 474 VAL A 476 0 SHEET 2 A 5 LEU A 517 PRO A 521 1 O LEU A 519 N TYR A 475 SHEET 3 A 5 LYS A 444 THR A 449 1 N VAL A 446 O VAL A 520 SHEET 4 A 5 PHE A 544 CYS A 549 1 O PHE A 545 N TRP A 447 SHEET 5 A 5 LEU A 591 LEU A 593 1 O LEU A 593 N PHE A 548 SHEET 1 B 5 ALA B 474 VAL B 476 0 SHEET 2 B 5 LEU B 517 PRO B 521 1 O LEU B 519 N TYR B 475 SHEET 3 B 5 LYS B 444 THR B 449 1 N VAL B 446 O VAL B 518 SHEET 4 B 5 PHE B 544 CYS B 549 1 O PHE B 545 N TRP B 447 SHEET 5 B 5 LEU B 591 LEU B 593 1 O LEU B 593 N PHE B 548 SITE 1 AC1 11 LEU A 451 SER A 452 GLY A 453 SER A 454 SITE 2 AC1 11 GLY A 455 LYS A 456 SER A 457 HIS A 484 SITE 3 AC1 11 HOH A 811 HOH A 820 HOH A 830 CRYST1 68.167 71.158 118.560 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008435 0.00000