data_4RFW # _entry.id 4RFW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB RCSB087295 ? ? PDB 4RFW pdb_00004rfw 10.2210/pdb4rfw/pdb WWPDB D_1000087295 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OAP . unspecified PDB 4K4J . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RFW _pdbx_database_status.recvd_initial_deposition_date 2014-09-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xia, G.' 1 'Muccio, D.D.' 2 'Smith, C.D.' 3 # _citation.id primary _citation.title 'Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 58 _citation.page_first 7763 _citation.page_last 7774 _citation.year 2015 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26331194 _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.5b00829 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Atigadda, V.R.' 1 ? primary 'Xia, G.' 2 ? primary 'Deshpande, A.' 3 ? primary 'Wu, L.' 4 ? primary 'Kedishvili, N.' 5 ? primary 'Smith, C.D.' 6 ? primary 'Krontiras, H.' 7 ? primary 'Bland, K.I.' 8 ? primary 'Grubbs, C.J.' 9 ? primary 'Brouillette, W.J.' 10 ? primary 'Muccio, D.D.' 11 ? # _cell.entry_id 4RFW _cell.length_a 66.390 _cell.length_b 66.390 _cell.length_c 111.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RFW _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Retinoic acid receptor RXR-alpha' 25897.021 1 ? ? 'ligand binding domain residues 228-458' ? 2 polymer syn 'Nuclear receptor coactivator 2' 1579.866 1 ? ? 'coactivator peptide LXXLL motif 2, residues 686-698' ? 3 non-polymer syn '(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid' 308.414 1 ? ? ? ? 4 water nat water 18.015 115 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Nuclear receptor subfamily 2 group B member 1, Retinoid X receptor alpha' 2 'NCoA-2, Class E basic helix-loop-helix protein 75, bHLHe75, Transcriptional intermediary factor 2, hTIF2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP ; ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP ; A ? 2 'polypeptide(L)' no no KHKILHRLLQDSS KHKILHRLLQDSS G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASP n 1 3 MET n 1 4 PRO n 1 5 VAL n 1 6 GLU n 1 7 ARG n 1 8 ILE n 1 9 LEU n 1 10 GLU n 1 11 ALA n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 VAL n 1 16 GLU n 1 17 PRO n 1 18 LYS n 1 19 THR n 1 20 GLU n 1 21 THR n 1 22 TYR n 1 23 VAL n 1 24 GLU n 1 25 ALA n 1 26 ASN n 1 27 MET n 1 28 GLY n 1 29 LEU n 1 30 ASN n 1 31 PRO n 1 32 SER n 1 33 SER n 1 34 PRO n 1 35 ASN n 1 36 ASP n 1 37 PRO n 1 38 VAL n 1 39 THR n 1 40 ASN n 1 41 ILE n 1 42 CYS n 1 43 GLN n 1 44 ALA n 1 45 ALA n 1 46 ASP n 1 47 LYS n 1 48 GLN n 1 49 LEU n 1 50 PHE n 1 51 THR n 1 52 LEU n 1 53 VAL n 1 54 GLU n 1 55 TRP n 1 56 ALA n 1 57 LYS n 1 58 ARG n 1 59 ILE n 1 60 PRO n 1 61 HIS n 1 62 PHE n 1 63 SER n 1 64 GLU n 1 65 LEU n 1 66 PRO n 1 67 LEU n 1 68 ASP n 1 69 ASP n 1 70 GLN n 1 71 VAL n 1 72 ILE n 1 73 LEU n 1 74 LEU n 1 75 ARG n 1 76 ALA n 1 77 GLY n 1 78 TRP n 1 79 ASN n 1 80 GLU n 1 81 LEU n 1 82 LEU n 1 83 ILE n 1 84 ALA n 1 85 SER n 1 86 PHE n 1 87 SER n 1 88 HIS n 1 89 ARG n 1 90 SER n 1 91 ILE n 1 92 ALA n 1 93 VAL n 1 94 LYS n 1 95 ASP n 1 96 GLY n 1 97 ILE n 1 98 LEU n 1 99 LEU n 1 100 ALA n 1 101 THR n 1 102 GLY n 1 103 LEU n 1 104 HIS n 1 105 VAL n 1 106 HIS n 1 107 ARG n 1 108 ASN n 1 109 SER n 1 110 ALA n 1 111 HIS n 1 112 SER n 1 113 ALA n 1 114 GLY n 1 115 VAL n 1 116 GLY n 1 117 ALA n 1 118 ILE n 1 119 PHE n 1 120 ASP n 1 121 ARG n 1 122 VAL n 1 123 LEU n 1 124 THR n 1 125 GLU n 1 126 LEU n 1 127 VAL n 1 128 SER n 1 129 LYS n 1 130 MET n 1 131 ARG n 1 132 ASP n 1 133 MET n 1 134 GLN n 1 135 MET n 1 136 ASP n 1 137 LYS n 1 138 THR n 1 139 GLU n 1 140 LEU n 1 141 GLY n 1 142 CYS n 1 143 LEU n 1 144 ARG n 1 145 ALA n 1 146 ILE n 1 147 VAL n 1 148 LEU n 1 149 PHE n 1 150 ASN n 1 151 PRO n 1 152 ASP n 1 153 SER n 1 154 LYS n 1 155 GLY n 1 156 LEU n 1 157 SER n 1 158 ASN n 1 159 PRO n 1 160 ALA n 1 161 GLU n 1 162 VAL n 1 163 GLU n 1 164 ALA n 1 165 LEU n 1 166 ARG n 1 167 GLU n 1 168 LYS n 1 169 VAL n 1 170 TYR n 1 171 ALA n 1 172 SER n 1 173 LEU n 1 174 GLU n 1 175 ALA n 1 176 TYR n 1 177 CYS n 1 178 LYS n 1 179 HIS n 1 180 LYS n 1 181 TYR n 1 182 PRO n 1 183 GLU n 1 184 GLN n 1 185 PRO n 1 186 GLY n 1 187 ARG n 1 188 PHE n 1 189 ALA n 1 190 LYS n 1 191 LEU n 1 192 LEU n 1 193 LEU n 1 194 ARG n 1 195 LEU n 1 196 PRO n 1 197 ALA n 1 198 LEU n 1 199 ARG n 1 200 SER n 1 201 ILE n 1 202 GLY n 1 203 LEU n 1 204 LYS n 1 205 CYS n 1 206 LEU n 1 207 GLU n 1 208 HIS n 1 209 LEU n 1 210 PHE n 1 211 PHE n 1 212 PHE n 1 213 LYS n 1 214 LEU n 1 215 ILE n 1 216 GLY n 1 217 ASP n 1 218 THR n 1 219 PRO n 1 220 ILE n 1 221 ASP n 1 222 THR n 1 223 PHE n 1 224 LEU n 1 225 MET n 1 226 GLU n 1 227 MET n 1 228 LEU n 1 229 GLU n 1 230 ALA n 1 231 PRO n 2 1 LYS n 2 2 HIS n 2 3 LYS n 2 4 ILE n 2 5 LEU n 2 6 HIS n 2 7 ARG n 2 8 LEU n 2 9 LEU n 2 10 GLN n 2 11 ASP n 2 12 SER n 2 13 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR2B1, RXRA, RXRA NR2B1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'BL21(DE3)' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RXRA_HUMAN P19793 1 ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP ; 228 ? 2 UNP NCOA2_HUMAN Q15596 2 KHKILHRLLQDSS 686 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RFW A 1 ? 231 ? P19793 228 ? 458 ? 228 458 2 2 4RFW G 1 ? 13 ? Q15596 686 ? 698 ? 471 483 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3RB non-polymer . '(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid' ? 'C21 H24 O2' 308.414 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RFW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '5-12% PEG4000, 3-12 Glycerol, 0.1 Bis-Tris pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.315 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.315 # _reflns.entry_id 4RFW _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 46672 _reflns.number_all 47077 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RFW _refine.ls_number_reflns_obs 8555 _refine.ls_number_reflns_all 9557 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_all 0.261 _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1002 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entry 3OAP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1787 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1925 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 50 # _struct.entry_id 4RFW _struct.title 'Crystal structure of human retinoid X Receptor alpha-ligand binding domain complex with 9cUAB70 and the coactivator peptide GRIP-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RFW _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'ligand binding domain, cancer prevention, coactivator peptide, conformationally constrained retinoids, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 4 ? GLU A 16 ? PRO A 231 GLU A 243 1 ? 13 HELX_P HELX_P2 2 ASP A 36 ? ARG A 58 ? ASP A 263 ARG A 285 1 ? 23 HELX_P HELX_P3 3 HIS A 61 ? LEU A 65 ? HIS A 288 LEU A 292 5 ? 5 HELX_P HELX_P4 4 PRO A 66 ? SER A 90 ? PRO A 293 SER A 317 1 ? 25 HELX_P HELX_P5 5 ARG A 107 ? SER A 112 ? ARG A 334 SER A 339 1 ? 6 HELX_P HELX_P6 6 VAL A 115 ? LEU A 126 ? VAL A 342 LEU A 353 1 ? 12 HELX_P HELX_P7 7 LEU A 126 ? MET A 133 ? LEU A 353 MET A 360 1 ? 8 HELX_P HELX_P8 8 ASP A 136 ? PHE A 149 ? ASP A 363 PHE A 376 1 ? 14 HELX_P HELX_P9 9 ASN A 158 ? TYR A 181 ? ASN A 385 TYR A 408 1 ? 24 HELX_P HELX_P10 10 GLY A 186 ? LEU A 193 ? GLY A 413 LEU A 420 1 ? 8 HELX_P HELX_P11 11 ARG A 194 ? GLY A 216 ? ARG A 421 GLY A 443 1 ? 23 HELX_P HELX_P12 12 ASP A 221 ? LEU A 228 ? ASP A 448 LEU A 455 1 ? 8 HELX_P HELX_P13 13 HIS B 2 ? ASP B 11 ? HIS G 472 ASP G 481 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 230 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 457 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 231 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 458 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.23 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 96 ? LEU A 98 ? GLY A 323 LEU A 325 A 2 HIS A 104 ? HIS A 106 ? HIS A 331 HIS A 333 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 97 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 324 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 105 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 332 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3RB _struct_site.pdbx_auth_seq_id 500 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE 3RB A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ILE A 41 ? ILE A 268 . ? 1_555 ? 2 AC1 10 ALA A 44 ? ALA A 271 . ? 1_555 ? 3 AC1 10 ALA A 45 ? ALA A 272 . ? 1_555 ? 4 AC1 10 PHE A 86 ? PHE A 313 . ? 1_555 ? 5 AC1 10 ARG A 89 ? ARG A 316 . ? 1_555 ? 6 AC1 10 LEU A 99 ? LEU A 326 . ? 1_555 ? 7 AC1 10 ALA A 100 ? ALA A 327 . ? 1_555 ? 8 AC1 10 ILE A 118 ? ILE A 345 . ? 1_555 ? 9 AC1 10 LEU A 209 ? LEU A 436 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 611 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RFW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RFW _atom_sites.fract_transf_matrix[1][1] 0.015063 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015063 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008944 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 228 228 GLU GLU A . n A 1 2 ASP 2 229 229 ASP ASP A . n A 1 3 MET 3 230 230 MET MET A . n A 1 4 PRO 4 231 231 PRO PRO A . n A 1 5 VAL 5 232 232 VAL VAL A . n A 1 6 GLU 6 233 233 GLU GLU A . n A 1 7 ARG 7 234 234 ARG ARG A . n A 1 8 ILE 8 235 235 ILE ILE A . n A 1 9 LEU 9 236 236 LEU LEU A . n A 1 10 GLU 10 237 237 GLU GLU A . n A 1 11 ALA 11 238 238 ALA ALA A . n A 1 12 GLU 12 239 239 GLU GLU A . n A 1 13 LEU 13 240 240 LEU LEU A . n A 1 14 ALA 14 241 241 ALA ALA A . n A 1 15 VAL 15 242 242 VAL VAL A . n A 1 16 GLU 16 243 243 GLU GLU A . n A 1 17 PRO 17 244 244 PRO PRO A . n A 1 18 LYS 18 245 ? ? ? A . n A 1 19 THR 19 246 ? ? ? A . n A 1 20 GLU 20 247 ? ? ? A . n A 1 21 THR 21 248 ? ? ? A . n A 1 22 TYR 22 249 ? ? ? A . n A 1 23 VAL 23 250 ? ? ? A . n A 1 24 GLU 24 251 ? ? ? A . n A 1 25 ALA 25 252 ? ? ? A . n A 1 26 ASN 26 253 ? ? ? A . n A 1 27 MET 27 254 ? ? ? A . n A 1 28 GLY 28 255 ? ? ? A . n A 1 29 LEU 29 256 ? ? ? A . n A 1 30 ASN 30 257 ? ? ? A . n A 1 31 PRO 31 258 ? ? ? A . n A 1 32 SER 32 259 ? ? ? A . n A 1 33 SER 33 260 ? ? ? A . n A 1 34 PRO 34 261 ? ? ? A . n A 1 35 ASN 35 262 262 ASN ASN A . n A 1 36 ASP 36 263 263 ASP ASP A . n A 1 37 PRO 37 264 264 PRO PRO A . n A 1 38 VAL 38 265 265 VAL VAL A . n A 1 39 THR 39 266 266 THR THR A . n A 1 40 ASN 40 267 267 ASN ASN A . n A 1 41 ILE 41 268 268 ILE ILE A . n A 1 42 CYS 42 269 269 CYS CYS A . n A 1 43 GLN 43 270 270 GLN GLN A . n A 1 44 ALA 44 271 271 ALA ALA A . n A 1 45 ALA 45 272 272 ALA ALA A . n A 1 46 ASP 46 273 273 ASP ASP A . n A 1 47 LYS 47 274 274 LYS LYS A . n A 1 48 GLN 48 275 275 GLN GLN A . n A 1 49 LEU 49 276 276 LEU LEU A . n A 1 50 PHE 50 277 277 PHE PHE A . n A 1 51 THR 51 278 278 THR THR A . n A 1 52 LEU 52 279 279 LEU LEU A . n A 1 53 VAL 53 280 280 VAL VAL A . n A 1 54 GLU 54 281 281 GLU GLU A . n A 1 55 TRP 55 282 282 TRP TRP A . n A 1 56 ALA 56 283 283 ALA ALA A . n A 1 57 LYS 57 284 284 LYS LYS A . n A 1 58 ARG 58 285 285 ARG ARG A . n A 1 59 ILE 59 286 286 ILE ILE A . n A 1 60 PRO 60 287 287 PRO PRO A . n A 1 61 HIS 61 288 288 HIS HIS A . n A 1 62 PHE 62 289 289 PHE PHE A . n A 1 63 SER 63 290 290 SER SER A . n A 1 64 GLU 64 291 291 GLU GLU A . n A 1 65 LEU 65 292 292 LEU LEU A . n A 1 66 PRO 66 293 293 PRO PRO A . n A 1 67 LEU 67 294 294 LEU LEU A . n A 1 68 ASP 68 295 295 ASP ASP A . n A 1 69 ASP 69 296 296 ASP ASP A . n A 1 70 GLN 70 297 297 GLN GLN A . n A 1 71 VAL 71 298 298 VAL VAL A . n A 1 72 ILE 72 299 299 ILE ILE A . n A 1 73 LEU 73 300 300 LEU LEU A . n A 1 74 LEU 74 301 301 LEU LEU A . n A 1 75 ARG 75 302 302 ARG ARG A . n A 1 76 ALA 76 303 303 ALA ALA A . n A 1 77 GLY 77 304 304 GLY GLY A . n A 1 78 TRP 78 305 305 TRP TRP A . n A 1 79 ASN 79 306 306 ASN ASN A . n A 1 80 GLU 80 307 307 GLU GLU A . n A 1 81 LEU 81 308 308 LEU LEU A . n A 1 82 LEU 82 309 309 LEU LEU A . n A 1 83 ILE 83 310 310 ILE ILE A . n A 1 84 ALA 84 311 311 ALA ALA A . n A 1 85 SER 85 312 312 SER SER A . n A 1 86 PHE 86 313 313 PHE PHE A . n A 1 87 SER 87 314 314 SER SER A . n A 1 88 HIS 88 315 315 HIS HIS A . n A 1 89 ARG 89 316 316 ARG ARG A . n A 1 90 SER 90 317 317 SER SER A . n A 1 91 ILE 91 318 318 ILE ILE A . n A 1 92 ALA 92 319 319 ALA ALA A . n A 1 93 VAL 93 320 320 VAL VAL A . n A 1 94 LYS 94 321 321 LYS LYS A . n A 1 95 ASP 95 322 322 ASP ASP A . n A 1 96 GLY 96 323 323 GLY GLY A . n A 1 97 ILE 97 324 324 ILE ILE A . n A 1 98 LEU 98 325 325 LEU LEU A . n A 1 99 LEU 99 326 326 LEU LEU A . n A 1 100 ALA 100 327 327 ALA ALA A . n A 1 101 THR 101 328 328 THR THR A . n A 1 102 GLY 102 329 329 GLY GLY A . n A 1 103 LEU 103 330 330 LEU LEU A . n A 1 104 HIS 104 331 331 HIS HIS A . n A 1 105 VAL 105 332 332 VAL VAL A . n A 1 106 HIS 106 333 333 HIS HIS A . n A 1 107 ARG 107 334 334 ARG ARG A . n A 1 108 ASN 108 335 335 ASN ASN A . n A 1 109 SER 109 336 336 SER SER A . n A 1 110 ALA 110 337 337 ALA ALA A . n A 1 111 HIS 111 338 338 HIS HIS A . n A 1 112 SER 112 339 339 SER SER A . n A 1 113 ALA 113 340 340 ALA ALA A . n A 1 114 GLY 114 341 341 GLY GLY A . n A 1 115 VAL 115 342 342 VAL VAL A . n A 1 116 GLY 116 343 343 GLY GLY A . n A 1 117 ALA 117 344 344 ALA ALA A . n A 1 118 ILE 118 345 345 ILE ILE A . n A 1 119 PHE 119 346 346 PHE PHE A . n A 1 120 ASP 120 347 347 ASP ASP A . n A 1 121 ARG 121 348 348 ARG ARG A . n A 1 122 VAL 122 349 349 VAL VAL A . n A 1 123 LEU 123 350 350 LEU LEU A . n A 1 124 THR 124 351 351 THR THR A . n A 1 125 GLU 125 352 352 GLU GLU A . n A 1 126 LEU 126 353 353 LEU LEU A . n A 1 127 VAL 127 354 354 VAL VAL A . n A 1 128 SER 128 355 355 SER SER A . n A 1 129 LYS 129 356 356 LYS LYS A . n A 1 130 MET 130 357 357 MET MET A . n A 1 131 ARG 131 358 358 ARG ARG A . n A 1 132 ASP 132 359 359 ASP ASP A . n A 1 133 MET 133 360 360 MET MET A . n A 1 134 GLN 134 361 361 GLN GLN A . n A 1 135 MET 135 362 362 MET MET A . n A 1 136 ASP 136 363 363 ASP ASP A . n A 1 137 LYS 137 364 364 LYS LYS A . n A 1 138 THR 138 365 365 THR THR A . n A 1 139 GLU 139 366 366 GLU GLU A . n A 1 140 LEU 140 367 367 LEU LEU A . n A 1 141 GLY 141 368 368 GLY GLY A . n A 1 142 CYS 142 369 369 CYS CYS A . n A 1 143 LEU 143 370 370 LEU LEU A . n A 1 144 ARG 144 371 371 ARG ARG A . n A 1 145 ALA 145 372 372 ALA ALA A . n A 1 146 ILE 146 373 373 ILE ILE A . n A 1 147 VAL 147 374 374 VAL VAL A . n A 1 148 LEU 148 375 375 LEU LEU A . n A 1 149 PHE 149 376 376 PHE PHE A . n A 1 150 ASN 150 377 377 ASN ASN A . n A 1 151 PRO 151 378 378 PRO PRO A . n A 1 152 ASP 152 379 379 ASP ASP A . n A 1 153 SER 153 380 380 SER SER A . n A 1 154 LYS 154 381 381 LYS LYS A . n A 1 155 GLY 155 382 382 GLY GLY A . n A 1 156 LEU 156 383 383 LEU LEU A . n A 1 157 SER 157 384 384 SER SER A . n A 1 158 ASN 158 385 385 ASN ASN A . n A 1 159 PRO 159 386 386 PRO PRO A . n A 1 160 ALA 160 387 387 ALA ALA A . n A 1 161 GLU 161 388 388 GLU GLU A . n A 1 162 VAL 162 389 389 VAL VAL A . n A 1 163 GLU 163 390 390 GLU GLU A . n A 1 164 ALA 164 391 391 ALA ALA A . n A 1 165 LEU 165 392 392 LEU LEU A . n A 1 166 ARG 166 393 393 ARG ARG A . n A 1 167 GLU 167 394 394 GLU GLU A . n A 1 168 LYS 168 395 395 LYS LYS A . n A 1 169 VAL 169 396 396 VAL VAL A . n A 1 170 TYR 170 397 397 TYR TYR A . n A 1 171 ALA 171 398 398 ALA ALA A . n A 1 172 SER 172 399 399 SER SER A . n A 1 173 LEU 173 400 400 LEU LEU A . n A 1 174 GLU 174 401 401 GLU GLU A . n A 1 175 ALA 175 402 402 ALA ALA A . n A 1 176 TYR 176 403 403 TYR TYR A . n A 1 177 CYS 177 404 404 CYS CYS A . n A 1 178 LYS 178 405 405 LYS LYS A . n A 1 179 HIS 179 406 406 HIS HIS A . n A 1 180 LYS 180 407 407 LYS LYS A . n A 1 181 TYR 181 408 408 TYR TYR A . n A 1 182 PRO 182 409 409 PRO PRO A . n A 1 183 GLU 183 410 410 GLU GLU A . n A 1 184 GLN 184 411 411 GLN GLN A . n A 1 185 PRO 185 412 412 PRO PRO A . n A 1 186 GLY 186 413 413 GLY GLY A . n A 1 187 ARG 187 414 414 ARG ARG A . n A 1 188 PHE 188 415 415 PHE PHE A . n A 1 189 ALA 189 416 416 ALA ALA A . n A 1 190 LYS 190 417 417 LYS LYS A . n A 1 191 LEU 191 418 418 LEU LEU A . n A 1 192 LEU 192 419 419 LEU LEU A . n A 1 193 LEU 193 420 420 LEU LEU A . n A 1 194 ARG 194 421 421 ARG ARG A . n A 1 195 LEU 195 422 422 LEU LEU A . n A 1 196 PRO 196 423 423 PRO PRO A . n A 1 197 ALA 197 424 424 ALA ALA A . n A 1 198 LEU 198 425 425 LEU LEU A . n A 1 199 ARG 199 426 426 ARG ARG A . n A 1 200 SER 200 427 427 SER SER A . n A 1 201 ILE 201 428 428 ILE ILE A . n A 1 202 GLY 202 429 429 GLY GLY A . n A 1 203 LEU 203 430 430 LEU LEU A . n A 1 204 LYS 204 431 431 LYS LYS A . n A 1 205 CYS 205 432 432 CYS CYS A . n A 1 206 LEU 206 433 433 LEU LEU A . n A 1 207 GLU 207 434 434 GLU GLU A . n A 1 208 HIS 208 435 435 HIS HIS A . n A 1 209 LEU 209 436 436 LEU LEU A . n A 1 210 PHE 210 437 437 PHE PHE A . n A 1 211 PHE 211 438 438 PHE PHE A . n A 1 212 PHE 212 439 439 PHE PHE A . n A 1 213 LYS 213 440 440 LYS LYS A . n A 1 214 LEU 214 441 441 LEU LEU A . n A 1 215 ILE 215 442 442 ILE ILE A . n A 1 216 GLY 216 443 443 GLY GLY A . n A 1 217 ASP 217 444 444 ASP ASP A . n A 1 218 THR 218 445 445 THR THR A . n A 1 219 PRO 219 446 446 PRO PRO A . n A 1 220 ILE 220 447 447 ILE ILE A . n A 1 221 ASP 221 448 448 ASP ASP A . n A 1 222 THR 222 449 449 THR THR A . n A 1 223 PHE 223 450 450 PHE PHE A . n A 1 224 LEU 224 451 451 LEU LEU A . n A 1 225 MET 225 452 452 MET MET A . n A 1 226 GLU 226 453 453 GLU GLU A . n A 1 227 MET 227 454 454 MET MET A . n A 1 228 LEU 228 455 455 LEU LEU A . n A 1 229 GLU 229 456 456 GLU GLU A . n A 1 230 ALA 230 457 457 ALA ALA A . n A 1 231 PRO 231 458 458 PRO PRO A . n B 2 1 LYS 1 471 471 LYS LYS G . n B 2 2 HIS 2 472 472 HIS HIS G . n B 2 3 LYS 3 473 473 LYS LYS G . n B 2 4 ILE 4 474 474 ILE ILE G . n B 2 5 LEU 5 475 475 LEU LEU G . n B 2 6 HIS 6 476 476 HIS HIS G . n B 2 7 ARG 7 477 477 ARG ARG G . n B 2 8 LEU 8 478 478 LEU LEU G . n B 2 9 LEU 9 479 479 LEU LEU G . n B 2 10 GLN 10 480 480 GLN GLN G . n B 2 11 ASP 11 481 481 ASP ASP G . n B 2 12 SER 12 482 ? ? ? G . n B 2 13 SER 13 483 ? ? ? G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3RB 1 500 500 3RB LIG A . D 4 HOH 1 601 501 HOH HOH A . D 4 HOH 2 602 502 HOH HOH A . D 4 HOH 3 603 503 HOH HOH A . D 4 HOH 4 604 504 HOH HOH A . D 4 HOH 5 605 505 HOH HOH A . D 4 HOH 6 606 506 HOH HOH A . D 4 HOH 7 607 507 HOH HOH A . D 4 HOH 8 608 508 HOH HOH A . D 4 HOH 9 609 509 HOH HOH A . D 4 HOH 10 610 511 HOH HOH A . D 4 HOH 11 611 512 HOH HOH A . D 4 HOH 12 612 513 HOH HOH A . D 4 HOH 13 613 515 HOH HOH A . D 4 HOH 14 614 516 HOH HOH A . D 4 HOH 15 615 518 HOH HOH A . D 4 HOH 16 616 519 HOH HOH A . D 4 HOH 17 617 520 HOH HOH A . D 4 HOH 18 618 521 HOH HOH A . D 4 HOH 19 619 522 HOH HOH A . D 4 HOH 20 620 523 HOH HOH A . D 4 HOH 21 621 524 HOH HOH A . D 4 HOH 22 622 525 HOH HOH A . D 4 HOH 23 623 526 HOH HOH A . D 4 HOH 24 624 528 HOH HOH A . D 4 HOH 25 625 529 HOH HOH A . D 4 HOH 26 626 530 HOH HOH A . D 4 HOH 27 627 531 HOH HOH A . D 4 HOH 28 628 532 HOH HOH A . D 4 HOH 29 629 533 HOH HOH A . D 4 HOH 30 630 534 HOH HOH A . D 4 HOH 31 631 535 HOH HOH A . D 4 HOH 32 632 536 HOH HOH A . D 4 HOH 33 633 539 HOH HOH A . D 4 HOH 34 634 540 HOH HOH A . D 4 HOH 35 635 541 HOH HOH A . D 4 HOH 36 636 542 HOH HOH A . D 4 HOH 37 637 544 HOH HOH A . D 4 HOH 38 638 545 HOH HOH A . D 4 HOH 39 639 546 HOH HOH A . D 4 HOH 40 640 547 HOH HOH A . D 4 HOH 41 641 548 HOH HOH A . D 4 HOH 42 642 549 HOH HOH A . D 4 HOH 43 643 554 HOH HOH A . D 4 HOH 44 644 555 HOH HOH A . D 4 HOH 45 645 556 HOH HOH A . D 4 HOH 46 646 557 HOH HOH A . D 4 HOH 47 647 558 HOH HOH A . D 4 HOH 48 648 559 HOH HOH A . D 4 HOH 49 649 561 HOH HOH A . D 4 HOH 50 650 562 HOH HOH A . D 4 HOH 51 651 563 HOH HOH A . D 4 HOH 52 652 564 HOH HOH A . D 4 HOH 53 653 565 HOH HOH A . D 4 HOH 54 654 567 HOH HOH A . D 4 HOH 55 655 568 HOH HOH A . D 4 HOH 56 656 569 HOH HOH A . D 4 HOH 57 657 570 HOH HOH A . D 4 HOH 58 658 571 HOH HOH A . D 4 HOH 59 659 572 HOH HOH A . D 4 HOH 60 660 573 HOH HOH A . D 4 HOH 61 661 574 HOH HOH A . D 4 HOH 62 662 575 HOH HOH A . D 4 HOH 63 663 576 HOH HOH A . D 4 HOH 64 664 577 HOH HOH A . D 4 HOH 65 665 578 HOH HOH A . D 4 HOH 66 666 581 HOH HOH A . D 4 HOH 67 667 582 HOH HOH A . D 4 HOH 68 668 583 HOH HOH A . D 4 HOH 69 669 584 HOH HOH A . D 4 HOH 70 670 585 HOH HOH A . D 4 HOH 71 671 586 HOH HOH A . D 4 HOH 72 672 587 HOH HOH A . D 4 HOH 73 673 588 HOH HOH A . D 4 HOH 74 674 589 HOH HOH A . D 4 HOH 75 675 591 HOH HOH A . D 4 HOH 76 676 592 HOH HOH A . D 4 HOH 77 677 593 HOH HOH A . D 4 HOH 78 678 594 HOH HOH A . D 4 HOH 79 679 595 HOH HOH A . D 4 HOH 80 680 596 HOH HOH A . D 4 HOH 81 681 597 HOH HOH A . D 4 HOH 82 682 598 HOH HOH A . D 4 HOH 83 683 599 HOH HOH A . D 4 HOH 84 684 600 HOH HOH A . D 4 HOH 85 685 601 HOH HOH A . D 4 HOH 86 686 603 HOH HOH A . D 4 HOH 87 687 605 HOH HOH A . D 4 HOH 88 688 606 HOH HOH A . D 4 HOH 89 689 608 HOH HOH A . D 4 HOH 90 690 609 HOH HOH A . D 4 HOH 91 691 610 HOH HOH A . D 4 HOH 92 692 612 HOH HOH A . D 4 HOH 93 693 614 HOH HOH A . D 4 HOH 94 694 616 HOH HOH A . D 4 HOH 95 695 617 HOH HOH A . D 4 HOH 96 696 618 HOH HOH A . D 4 HOH 97 697 619 HOH HOH A . D 4 HOH 98 698 620 HOH HOH A . D 4 HOH 99 699 622 HOH HOH A . D 4 HOH 100 700 623 HOH HOH A . D 4 HOH 101 701 624 HOH HOH A . D 4 HOH 102 702 628 HOH HOH A . D 4 HOH 103 703 630 HOH HOH A . D 4 HOH 104 704 632 HOH HOH A . D 4 HOH 105 705 633 HOH HOH A . D 4 HOH 106 706 634 HOH HOH A . D 4 HOH 107 707 635 HOH HOH A . D 4 HOH 108 708 636 HOH HOH A . D 4 HOH 109 709 638 HOH HOH A . D 4 HOH 110 710 639 HOH HOH A . D 4 HOH 111 711 640 HOH HOH A . D 4 HOH 112 712 641 HOH HOH A . D 4 HOH 113 713 642 HOH HOH A . D 4 HOH 114 714 643 HOH HOH A . E 4 HOH 1 501 514 HOH HOH G . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 132.7800000000 -1.0000000000 0.0000000000 0.0000000000 132.7800000000 0.0000000000 0.0000000000 -1.0000000000 55.9050000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 706 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-16 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2022-08-17 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_assembly_gen 4 3 'Structure model' pdbx_struct_assembly_prop 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_site 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_assembly.details' 4 3 'Structure model' '_pdbx_struct_assembly.method_details' 5 3 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 6 3 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 7 3 'Structure model' '_pdbx_struct_assembly_gen.oper_expression' 8 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 288 ? ? 66.06 -4.83 2 1 LYS A 321 ? ? -63.24 -89.46 3 1 LEU A 353 ? ? -114.85 -70.18 4 1 ASN A 385 ? ? -150.52 74.60 5 1 LYS A 405 ? ? -73.42 20.36 6 1 HIS A 406 ? ? -135.81 -30.52 7 1 THR A 445 ? ? 69.81 96.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 245 ? A LYS 18 2 1 Y 1 A THR 246 ? A THR 19 3 1 Y 1 A GLU 247 ? A GLU 20 4 1 Y 1 A THR 248 ? A THR 21 5 1 Y 1 A TYR 249 ? A TYR 22 6 1 Y 1 A VAL 250 ? A VAL 23 7 1 Y 1 A GLU 251 ? A GLU 24 8 1 Y 1 A ALA 252 ? A ALA 25 9 1 Y 1 A ASN 253 ? A ASN 26 10 1 Y 1 A MET 254 ? A MET 27 11 1 Y 1 A GLY 255 ? A GLY 28 12 1 Y 1 A LEU 256 ? A LEU 29 13 1 Y 1 A ASN 257 ? A ASN 30 14 1 Y 1 A PRO 258 ? A PRO 31 15 1 Y 1 A SER 259 ? A SER 32 16 1 Y 1 A SER 260 ? A SER 33 17 1 Y 1 A PRO 261 ? A PRO 34 18 1 Y 1 G SER 482 ? B SER 12 19 1 Y 1 G SER 483 ? B SER 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3RB C4 C Y N 1 3RB C5 C Y N 2 3RB C6 C Y N 3 3RB C7 C N N 4 3RB C8 C N N 5 3RB C10 C N N 6 3RB C13 C N N 7 3RB C15 C N N 8 3RB C20 C N N 9 3RB C21 C N N 10 3RB "C2'" C N N 11 3RB "C1'" C N N 12 3RB C18 C N N 13 3RB C3 C Y N 14 3RB C2 C Y N 15 3RB C1 C Y N 16 3RB C9 C N N 17 3RB C19 C N N 18 3RB C11 C N N 19 3RB C12 C N N 20 3RB C14 C N N 21 3RB O1 O N N 22 3RB O2 O N N 23 3RB H1 H N N 24 3RB H2 H N N 25 3RB H3 H N N 26 3RB H4 H N N 27 3RB H5 H N N 28 3RB H6 H N N 29 3RB H7 H N N 30 3RB H8 H N N 31 3RB H9 H N N 32 3RB H10 H N N 33 3RB H11 H N N 34 3RB H12 H N N 35 3RB H13 H N N 36 3RB H14 H N N 37 3RB H15 H N N 38 3RB H16 H N N 39 3RB H17 H N N 40 3RB H18 H N N 41 3RB H19 H N N 42 3RB H20 H N N 43 3RB H21 H N N 44 3RB H22 H N N 45 3RB H23 H N N 46 3RB H24 H N N 47 ALA N N N N 48 ALA CA C N S 49 ALA C C N N 50 ALA O O N N 51 ALA CB C N N 52 ALA OXT O N N 53 ALA H H N N 54 ALA H2 H N N 55 ALA HA H N N 56 ALA HB1 H N N 57 ALA HB2 H N N 58 ALA HB3 H N N 59 ALA HXT H N N 60 ARG N N N N 61 ARG CA C N S 62 ARG C C N N 63 ARG O O N N 64 ARG CB C N N 65 ARG CG C N N 66 ARG CD C N N 67 ARG NE N N N 68 ARG CZ C N N 69 ARG NH1 N N N 70 ARG NH2 N N N 71 ARG OXT O N N 72 ARG H H N N 73 ARG H2 H N N 74 ARG HA H N N 75 ARG HB2 H N N 76 ARG HB3 H N N 77 ARG HG2 H N N 78 ARG HG3 H N N 79 ARG HD2 H N N 80 ARG HD3 H N N 81 ARG HE H N N 82 ARG HH11 H N N 83 ARG HH12 H N N 84 ARG HH21 H N N 85 ARG HH22 H N N 86 ARG HXT H N N 87 ASN N N N N 88 ASN CA C N S 89 ASN C C N N 90 ASN O O N N 91 ASN CB C N N 92 ASN CG C N N 93 ASN OD1 O N N 94 ASN ND2 N N N 95 ASN OXT O N N 96 ASN H H N N 97 ASN H2 H N N 98 ASN HA H N N 99 ASN HB2 H N N 100 ASN HB3 H N N 101 ASN HD21 H N N 102 ASN HD22 H N N 103 ASN HXT H N N 104 ASP N N N N 105 ASP CA C N S 106 ASP C C N N 107 ASP O O N N 108 ASP CB C N N 109 ASP CG C N N 110 ASP OD1 O N N 111 ASP OD2 O N N 112 ASP OXT O N N 113 ASP H H N N 114 ASP H2 H N N 115 ASP HA H N N 116 ASP HB2 H N N 117 ASP HB3 H N N 118 ASP HD2 H N N 119 ASP HXT H N N 120 CYS N N N N 121 CYS CA C N R 122 CYS C C N N 123 CYS O O N N 124 CYS CB C N N 125 CYS SG S N N 126 CYS OXT O N N 127 CYS H H N N 128 CYS H2 H N N 129 CYS HA H N N 130 CYS HB2 H N N 131 CYS HB3 H N N 132 CYS HG H N N 133 CYS HXT H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 PHE N N N N 297 PHE CA C N S 298 PHE C C N N 299 PHE O O N N 300 PHE CB C N N 301 PHE CG C Y N 302 PHE CD1 C Y N 303 PHE CD2 C Y N 304 PHE CE1 C Y N 305 PHE CE2 C Y N 306 PHE CZ C Y N 307 PHE OXT O N N 308 PHE H H N N 309 PHE H2 H N N 310 PHE HA H N N 311 PHE HB2 H N N 312 PHE HB3 H N N 313 PHE HD1 H N N 314 PHE HD2 H N N 315 PHE HE1 H N N 316 PHE HE2 H N N 317 PHE HZ H N N 318 PHE HXT H N N 319 PRO N N N N 320 PRO CA C N S 321 PRO C C N N 322 PRO O O N N 323 PRO CB C N N 324 PRO CG C N N 325 PRO CD C N N 326 PRO OXT O N N 327 PRO H H N N 328 PRO HA H N N 329 PRO HB2 H N N 330 PRO HB3 H N N 331 PRO HG2 H N N 332 PRO HG3 H N N 333 PRO HD2 H N N 334 PRO HD3 H N N 335 PRO HXT H N N 336 SER N N N N 337 SER CA C N S 338 SER C C N N 339 SER O O N N 340 SER CB C N N 341 SER OG O N N 342 SER OXT O N N 343 SER H H N N 344 SER H2 H N N 345 SER HA H N N 346 SER HB2 H N N 347 SER HB3 H N N 348 SER HG H N N 349 SER HXT H N N 350 THR N N N N 351 THR CA C N S 352 THR C C N N 353 THR O O N N 354 THR CB C N R 355 THR OG1 O N N 356 THR CG2 C N N 357 THR OXT O N N 358 THR H H N N 359 THR H2 H N N 360 THR HA H N N 361 THR HB H N N 362 THR HG1 H N N 363 THR HG21 H N N 364 THR HG22 H N N 365 THR HG23 H N N 366 THR HXT H N N 367 TRP N N N N 368 TRP CA C N S 369 TRP C C N N 370 TRP O O N N 371 TRP CB C N N 372 TRP CG C Y N 373 TRP CD1 C Y N 374 TRP CD2 C Y N 375 TRP NE1 N Y N 376 TRP CE2 C Y N 377 TRP CE3 C Y N 378 TRP CZ2 C Y N 379 TRP CZ3 C Y N 380 TRP CH2 C Y N 381 TRP OXT O N N 382 TRP H H N N 383 TRP H2 H N N 384 TRP HA H N N 385 TRP HB2 H N N 386 TRP HB3 H N N 387 TRP HD1 H N N 388 TRP HE1 H N N 389 TRP HE3 H N N 390 TRP HZ2 H N N 391 TRP HZ3 H N N 392 TRP HH2 H N N 393 TRP HXT H N N 394 TYR N N N N 395 TYR CA C N S 396 TYR C C N N 397 TYR O O N N 398 TYR CB C N N 399 TYR CG C Y N 400 TYR CD1 C Y N 401 TYR CD2 C Y N 402 TYR CE1 C Y N 403 TYR CE2 C Y N 404 TYR CZ C Y N 405 TYR OH O N N 406 TYR OXT O N N 407 TYR H H N N 408 TYR H2 H N N 409 TYR HA H N N 410 TYR HB2 H N N 411 TYR HB3 H N N 412 TYR HD1 H N N 413 TYR HD2 H N N 414 TYR HE1 H N N 415 TYR HE2 H N N 416 TYR HH H N N 417 TYR HXT H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3RB C19 C9 sing N N 1 3RB C10 C9 doub N Z 2 3RB C10 C11 sing N N 3 3RB C9 C8 sing N N 4 3RB C12 C11 doub N E 5 3RB C12 C13 sing N N 6 3RB C14 C13 doub N E 7 3RB C14 C15 sing N N 8 3RB C13 C20 sing N N 9 3RB O2 C15 doub N N 10 3RB C15 O1 sing N N 11 3RB "C1'" "C2'" sing N N 12 3RB "C1'" C21 sing N N 13 3RB C8 C7 doub N E 14 3RB "C2'" C7 sing N N 15 3RB C7 C6 sing N N 16 3RB C21 C18 sing N N 17 3RB C6 C5 doub Y N 18 3RB C6 C1 sing Y N 19 3RB C18 C5 sing N N 20 3RB C5 C4 sing Y N 21 3RB C1 C2 doub Y N 22 3RB C4 C3 doub Y N 23 3RB C2 C3 sing Y N 24 3RB C4 H1 sing N N 25 3RB C8 H2 sing N N 26 3RB C10 H3 sing N N 27 3RB C20 H4 sing N N 28 3RB C20 H5 sing N N 29 3RB C20 H6 sing N N 30 3RB C21 H7 sing N N 31 3RB C21 H8 sing N N 32 3RB "C2'" H9 sing N N 33 3RB "C2'" H10 sing N N 34 3RB "C1'" H11 sing N N 35 3RB "C1'" H12 sing N N 36 3RB C18 H13 sing N N 37 3RB C18 H14 sing N N 38 3RB C3 H15 sing N N 39 3RB C2 H16 sing N N 40 3RB C1 H17 sing N N 41 3RB C19 H18 sing N N 42 3RB C19 H19 sing N N 43 3RB C19 H20 sing N N 44 3RB C11 H21 sing N N 45 3RB C12 H22 sing N N 46 3RB C14 H23 sing N N 47 3RB O1 H24 sing N N 48 ALA N CA sing N N 49 ALA N H sing N N 50 ALA N H2 sing N N 51 ALA CA C sing N N 52 ALA CA CB sing N N 53 ALA CA HA sing N N 54 ALA C O doub N N 55 ALA C OXT sing N N 56 ALA CB HB1 sing N N 57 ALA CB HB2 sing N N 58 ALA CB HB3 sing N N 59 ALA OXT HXT sing N N 60 ARG N CA sing N N 61 ARG N H sing N N 62 ARG N H2 sing N N 63 ARG CA C sing N N 64 ARG CA CB sing N N 65 ARG CA HA sing N N 66 ARG C O doub N N 67 ARG C OXT sing N N 68 ARG CB CG sing N N 69 ARG CB HB2 sing N N 70 ARG CB HB3 sing N N 71 ARG CG CD sing N N 72 ARG CG HG2 sing N N 73 ARG CG HG3 sing N N 74 ARG CD NE sing N N 75 ARG CD HD2 sing N N 76 ARG CD HD3 sing N N 77 ARG NE CZ sing N N 78 ARG NE HE sing N N 79 ARG CZ NH1 sing N N 80 ARG CZ NH2 doub N N 81 ARG NH1 HH11 sing N N 82 ARG NH1 HH12 sing N N 83 ARG NH2 HH21 sing N N 84 ARG NH2 HH22 sing N N 85 ARG OXT HXT sing N N 86 ASN N CA sing N N 87 ASN N H sing N N 88 ASN N H2 sing N N 89 ASN CA C sing N N 90 ASN CA CB sing N N 91 ASN CA HA sing N N 92 ASN C O doub N N 93 ASN C OXT sing N N 94 ASN CB CG sing N N 95 ASN CB HB2 sing N N 96 ASN CB HB3 sing N N 97 ASN CG OD1 doub N N 98 ASN CG ND2 sing N N 99 ASN ND2 HD21 sing N N 100 ASN ND2 HD22 sing N N 101 ASN OXT HXT sing N N 102 ASP N CA sing N N 103 ASP N H sing N N 104 ASP N H2 sing N N 105 ASP CA C sing N N 106 ASP CA CB sing N N 107 ASP CA HA sing N N 108 ASP C O doub N N 109 ASP C OXT sing N N 110 ASP CB CG sing N N 111 ASP CB HB2 sing N N 112 ASP CB HB3 sing N N 113 ASP CG OD1 doub N N 114 ASP CG OD2 sing N N 115 ASP OD2 HD2 sing N N 116 ASP OXT HXT sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 SER N CA sing N N 325 SER N H sing N N 326 SER N H2 sing N N 327 SER CA C sing N N 328 SER CA CB sing N N 329 SER CA HA sing N N 330 SER C O doub N N 331 SER C OXT sing N N 332 SER CB OG sing N N 333 SER CB HB2 sing N N 334 SER CB HB3 sing N N 335 SER OG HG sing N N 336 SER OXT HXT sing N N 337 THR N CA sing N N 338 THR N H sing N N 339 THR N H2 sing N N 340 THR CA C sing N N 341 THR CA CB sing N N 342 THR CA HA sing N N 343 THR C O doub N N 344 THR C OXT sing N N 345 THR CB OG1 sing N N 346 THR CB CG2 sing N N 347 THR CB HB sing N N 348 THR OG1 HG1 sing N N 349 THR CG2 HG21 sing N N 350 THR CG2 HG22 sing N N 351 THR CG2 HG23 sing N N 352 THR OXT HXT sing N N 353 TRP N CA sing N N 354 TRP N H sing N N 355 TRP N H2 sing N N 356 TRP CA C sing N N 357 TRP CA CB sing N N 358 TRP CA HA sing N N 359 TRP C O doub N N 360 TRP C OXT sing N N 361 TRP CB CG sing N N 362 TRP CB HB2 sing N N 363 TRP CB HB3 sing N N 364 TRP CG CD1 doub Y N 365 TRP CG CD2 sing Y N 366 TRP CD1 NE1 sing Y N 367 TRP CD1 HD1 sing N N 368 TRP CD2 CE2 doub Y N 369 TRP CD2 CE3 sing Y N 370 TRP NE1 CE2 sing Y N 371 TRP NE1 HE1 sing N N 372 TRP CE2 CZ2 sing Y N 373 TRP CE3 CZ3 doub Y N 374 TRP CE3 HE3 sing N N 375 TRP CZ2 CH2 doub Y N 376 TRP CZ2 HZ2 sing N N 377 TRP CZ3 CH2 sing Y N 378 TRP CZ3 HZ3 sing N N 379 TRP CH2 HH2 sing N N 380 TRP OXT HXT sing N N 381 TYR N CA sing N N 382 TYR N H sing N N 383 TYR N H2 sing N N 384 TYR CA C sing N N 385 TYR CA CB sing N N 386 TYR CA HA sing N N 387 TYR C O doub N N 388 TYR C OXT sing N N 389 TYR CB CG sing N N 390 TYR CB HB2 sing N N 391 TYR CB HB3 sing N N 392 TYR CG CD1 doub Y N 393 TYR CG CD2 sing Y N 394 TYR CD1 CE1 sing Y N 395 TYR CD1 HD1 sing N N 396 TYR CD2 CE2 doub Y N 397 TYR CD2 HD2 sing N N 398 TYR CE1 CZ doub Y N 399 TYR CE1 HE1 sing N N 400 TYR CE2 CZ sing Y N 401 TYR CE2 HE2 sing N N 402 TYR CZ OH sing N N 403 TYR OH HH sing N N 404 TYR OXT HXT sing N N 405 VAL N CA sing N N 406 VAL N H sing N N 407 VAL N H2 sing N N 408 VAL CA C sing N N 409 VAL CA CB sing N N 410 VAL CA HA sing N N 411 VAL C O doub N N 412 VAL C OXT sing N N 413 VAL CB CG1 sing N N 414 VAL CB CG2 sing N N 415 VAL CB HB sing N N 416 VAL CG1 HG11 sing N N 417 VAL CG1 HG12 sing N N 418 VAL CG1 HG13 sing N N 419 VAL CG2 HG21 sing N N 420 VAL CG2 HG22 sing N N 421 VAL CG2 HG23 sing N N 422 VAL OXT HXT sing N N 423 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid' 3RB 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3OAP _pdbx_initial_refinement_model.details 'PDB entry 3OAP' #