HEADER VIRAL PROTEIN 30-SEP-14 4RGG TITLE STRUCTURE OF THE LACTOCOCCAL PHAGE 1358 RECEPTOR BINDING PROTEIN IN TITLE 2 COMPLEX WITH GLCNAC-1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHAGE STRUCTURAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-393; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE 1358; SOURCE 3 ORGANISM_TAXID: 741942; SOURCE 4 GENE: ORF20; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ALPHA/BETA PROTEIN, PHAGE RECEPTOR BONDING PROTEIN (ANTI-RECEPTOR), KEYWDS 2 L. LACTIS SMQ-388 SURFACE POLYSACCHARIDES (PELLICLE), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SPINELLI,S.MOINEAU,C.CAMBILLAU REVDAT 3 20-SEP-23 4RGG 1 HETSYN REVDAT 2 29-JUL-20 4RGG 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 SITE ATOM REVDAT 1 15-OCT-14 4RGG 0 JRNL AUTH S.SPINELLI,S.MOINEAU,C.CAMBILLAU JRNL TITL STRUCTURE OF THE 1358 LACTOCOCCAL PHAGE RBP IN COMPLEX WITH JRNL TITL 2 GLCNAC-1P JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 78636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6228 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5667 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8495 ; 1.893 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12967 ; 1.093 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 953 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7280 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1530 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3116 ; 3.444 ; 3.367 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3115 ; 3.444 ; 3.367 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3888 ; 5.109 ; 5.026 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3889 ; 5.458 ; 4.448 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3108 ; 4.375 ; 3.719 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3109 ; 4.313 ; 3.297 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4606 ; 6.740 ; 4.823 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5361 ; 9.318 ;30.124 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5188 ; 9.341 ;30.145 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 393 B 2 393 22783 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2530 -45.9460 39.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.0730 REMARK 3 T33: 0.0770 T12: 0.0041 REMARK 3 T13: -0.0251 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.1719 L22: 1.4169 REMARK 3 L33: 1.4708 L12: 1.0363 REMARK 3 L13: -0.7629 L23: -1.3722 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: -0.0542 S13: -0.1982 REMARK 3 S21: 0.2103 S22: -0.0681 S23: -0.1760 REMARK 3 S31: -0.3174 S32: 0.0693 S33: 0.1224 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7520 -46.2260 36.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.2174 REMARK 3 T33: 0.1521 T12: 0.0671 REMARK 3 T13: -0.0977 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.0176 L22: 0.8157 REMARK 3 L33: 0.7708 L12: -0.2599 REMARK 3 L13: -0.2806 L23: -0.6350 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.1160 S13: -0.0033 REMARK 3 S21: 0.0752 S22: -0.2256 S23: -0.2585 REMARK 3 S31: -0.0271 S32: 0.2124 S33: 0.2299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2920 -43.3640 25.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1114 REMARK 3 T33: 0.0661 T12: 0.0283 REMARK 3 T13: -0.0031 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.5183 L22: 0.2600 REMARK 3 L33: 1.2213 L12: -0.3227 REMARK 3 L13: 0.6170 L23: -0.4178 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.1750 S13: 0.0479 REMARK 3 S21: 0.0874 S22: -0.0766 S23: -0.0373 REMARK 3 S31: 0.0308 S32: 0.2307 S33: 0.1059 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8440 -22.0350 14.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0931 REMARK 3 T33: 0.0513 T12: -0.0274 REMARK 3 T13: 0.0144 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.4320 L22: 0.3170 REMARK 3 L33: 0.3799 L12: -0.2129 REMARK 3 L13: 0.0191 L23: 0.0455 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0772 S13: 0.0239 REMARK 3 S21: 0.0019 S22: 0.0509 S23: -0.0387 REMARK 3 S31: -0.1238 S32: 0.0645 S33: -0.0482 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -51.5590 -26.7180 11.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.1421 REMARK 3 T33: 0.0499 T12: -0.0230 REMARK 3 T13: -0.0059 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.2569 L22: 0.4118 REMARK 3 L33: 0.4241 L12: -0.2543 REMARK 3 L13: 0.1079 L23: -0.1295 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.0839 S13: -0.0092 REMARK 3 S21: -0.0549 S22: 0.0358 S23: 0.0464 REMARK 3 S31: -0.0263 S32: -0.0213 S33: -0.0210 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): -51.9100 -31.4480 13.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.1559 REMARK 3 T33: 0.0505 T12: -0.0227 REMARK 3 T13: -0.0156 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.2536 L22: 0.6267 REMARK 3 L33: 0.4787 L12: -0.3292 REMARK 3 L13: 0.1811 L23: -0.2771 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0941 S13: -0.0399 REMARK 3 S21: -0.0490 S22: 0.0204 S23: 0.0974 REMARK 3 S31: -0.0137 S32: -0.0179 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 393 REMARK 3 ORIGIN FOR THE GROUP (A): -50.9100 -28.0570 14.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0739 REMARK 3 T33: 0.0455 T12: 0.0006 REMARK 3 T13: 0.0023 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.2750 L22: 0.8735 REMARK 3 L33: 0.4837 L12: -0.2404 REMARK 3 L13: 0.0214 L23: -0.2543 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0828 S13: -0.0035 REMARK 3 S21: 0.0042 S22: -0.0009 S23: 0.0356 REMARK 3 S31: -0.0430 S32: -0.0307 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9930 10.7820 23.1780 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.0978 REMARK 3 T33: 0.1913 T12: -0.0138 REMARK 3 T13: -0.0132 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.1109 L22: 2.0107 REMARK 3 L33: 0.9816 L12: 1.3001 REMARK 3 L13: -0.4041 L23: -1.0943 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0252 S13: -0.3411 REMARK 3 S21: 0.2003 S22: -0.0019 S23: -0.3566 REMARK 3 S31: -0.2478 S32: 0.0064 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8820 10.0090 35.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.1991 REMARK 3 T33: 0.1117 T12: -0.0524 REMARK 3 T13: -0.0809 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.0284 L22: 1.1597 REMARK 3 L33: 1.2065 L12: 1.0582 REMARK 3 L13: 0.1239 L23: 0.4014 REMARK 3 S TENSOR REMARK 3 S11: 0.2100 S12: -0.1728 S13: -0.1166 REMARK 3 S21: 0.2178 S22: -0.2073 S23: -0.1444 REMARK 3 S31: -0.0181 S32: -0.2491 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9250 7.1290 25.8440 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.1537 REMARK 3 T33: 0.0379 T12: -0.0250 REMARK 3 T13: -0.0152 T23: -0.0561 REMARK 3 L TENSOR REMARK 3 L11: 1.0035 L22: 0.4326 REMARK 3 L33: 0.4416 L12: 0.6506 REMARK 3 L13: 0.6253 L23: 0.3828 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.1645 S13: -0.0451 REMARK 3 S21: 0.0744 S22: -0.0845 S23: -0.0441 REMARK 3 S31: 0.0066 S32: -0.1378 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0030 -13.8750 8.5340 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.1594 REMARK 3 T33: 0.0304 T12: 0.0028 REMARK 3 T13: -0.0048 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.2944 L22: 0.3447 REMARK 3 L33: 0.2495 L12: 0.0961 REMARK 3 L13: -0.1269 L23: 0.1085 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.1359 S13: -0.0252 REMARK 3 S21: 0.0188 S22: 0.0021 S23: -0.0300 REMARK 3 S31: 0.0053 S32: -0.0217 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 242 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7300 -8.6670 -1.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.1037 REMARK 3 T33: 0.0254 T12: -0.0026 REMARK 3 T13: 0.0002 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.2081 L22: 0.2956 REMARK 3 L33: 0.3740 L12: 0.1187 REMARK 3 L13: 0.0603 L23: 0.0868 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0728 S13: 0.0239 REMARK 3 S21: -0.0654 S22: -0.0166 S23: 0.0258 REMARK 3 S31: -0.0270 S32: -0.0804 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 302 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5610 -3.8220 -1.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0827 REMARK 3 T33: 0.0432 T12: 0.0048 REMARK 3 T13: 0.0012 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.2997 L22: 0.4057 REMARK 3 L33: 0.2565 L12: 0.1292 REMARK 3 L13: 0.2379 L23: 0.1393 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0817 S13: 0.0447 REMARK 3 S21: -0.0728 S22: -0.0040 S23: 0.0106 REMARK 3 S31: -0.0474 S32: -0.0766 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 352 B 393 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8420 -7.1840 -1.0300 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1196 REMARK 3 T33: 0.0248 T12: 0.0078 REMARK 3 T13: -0.0108 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.4015 L22: 0.6056 REMARK 3 L33: 0.2540 L12: 0.1902 REMARK 3 L13: -0.1352 L23: 0.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0748 S13: -0.0183 REMARK 3 S21: -0.0469 S22: 0.0190 S23: -0.0561 REMARK 3 S31: -0.0403 S32: -0.0432 S33: -0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4L92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V POLYETHYLENEGLYCOL 1000, 100 REMARK 280 MM SODIUM/POTASSIUM PHOSPHATE BUFFER, PH 6.2, 200 MM NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 82.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 82.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 82.95500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 82.95500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 82.95500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 82.95500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 82.95500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 82.95500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 82.95500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 82.95500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 82.95500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 82.95500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 82.95500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 82.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -82.95500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -82.95500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -82.95500 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 82.95500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 552 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 661 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 715 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 723 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 69 REMARK 465 GLY A 70 REMARK 465 GLY B 1 REMARK 465 ASN B 69 REMARK 465 GLY B 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 VAL A 97 CG1 CG2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 LYS B 4 CD CE NZ REMARK 470 VAL B 97 CG1 CG2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 163 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 635 O HOH A 683 1.70 REMARK 500 OD1 ASP A 133 NZ LYS A 338 1.93 REMARK 500 OD1 ASP B 133 NZ LYS B 338 1.98 REMARK 500 OG SER B 20 O HOH B 746 2.06 REMARK 500 ND1 HIS B 137 O HOH B 746 2.07 REMARK 500 NZ LYS B 338 O HOH B 744 2.13 REMARK 500 OXT PHE B 393 O HOH B 747 2.16 REMARK 500 O HOH B 720 O HOH B 738 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 18 OE2 GLU A 18 12455 1.30 REMARK 500 OE1 GLU B 18 OE2 GLU B 18 5555 1.72 REMARK 500 O HOH B 714 O HOH B 731 5555 1.87 REMARK 500 OE2 GLU B 18 OE2 GLU B 18 5555 1.98 REMARK 500 CD GLU A 18 OE2 GLU A 18 12455 2.04 REMARK 500 CD GLU B 18 OE2 GLU B 18 5555 2.10 REMARK 500 O HOH A 680 O HOH A 680 6445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 258 CB SER A 258 OG -0.083 REMARK 500 LYS A 338 CE LYS A 338 NZ 0.163 REMARK 500 SER B 258 CB SER B 258 OG -0.089 REMARK 500 LYS B 338 CD LYS B 338 CE 0.152 REMARK 500 ARG B 370 CD ARG B 370 NE -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 227 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS A 338 CG - CD - CE ANGL. DEV. = 22.9 DEGREES REMARK 500 ARG A 370 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU B 18 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG B 227 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG B 227 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 254 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LYS B 338 CG - CD - CE ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG B 370 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG B 370 NE - CZ - NH1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 370 NE - CZ - NH2 ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 156.03 -44.84 REMARK 500 ASN A 107 58.24 -104.37 REMARK 500 ASN A 176 14.13 -152.83 REMARK 500 TYR A 182 -153.42 -129.14 REMARK 500 PRO A 269 103.66 -49.20 REMARK 500 ARG A 354 -54.91 -133.83 REMARK 500 ASN A 359 -160.56 -100.01 REMARK 500 PRO B 15 -67.57 -29.73 REMARK 500 HIS B 52 154.73 -45.42 REMARK 500 ASN B 107 58.93 -105.01 REMARK 500 GLN B 157 140.14 -39.83 REMARK 500 ASN B 176 14.52 -154.11 REMARK 500 TYR B 182 -153.74 -127.54 REMARK 500 PRO B 269 103.98 -50.97 REMARK 500 ARG B 354 -54.26 -136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 6 ASN A 7 -142.67 REMARK 500 ALA A 67 ALA A 68 147.68 REMARK 500 GLY A 105 THR A 106 126.12 REMARK 500 ASP A 173 GLY A 174 -117.65 REMARK 500 GLY A 175 ASN A 176 -146.73 REMARK 500 ILE B 6 ASN B 7 -146.78 REMARK 500 ALA B 67 ALA B 68 146.38 REMARK 500 GLY B 105 THR B 106 124.47 REMARK 500 ASP B 173 GLY B 174 -115.78 REMARK 500 GLY B 175 ASN B 176 -145.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 370 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L9B RELATED DB: PDB REMARK 900 CSI DERIVATIVE REMARK 900 RELATED ID: 4L99 RELATED DB: PDB REMARK 900 GLYCEROL COMPLEX REMARK 900 RELATED ID: 4L92 RELATED DB: PDB REMARK 900 GLCNAC COMPLEX REMARK 900 RELATED ID: 4L97 RELATED DB: PDB REMARK 900 GLC1P COMPLEX REMARK 900 RELATED ID: 4RGA RELATED DB: PDB REMARK 900 COMPLEX WITH THE TRISACCHARIDE GLCNAC-GALF-GLCOME DBREF 4RGG A 2 393 UNP D3W0F1 D3W0F1_9VIRU 2 393 DBREF 4RGG B 2 393 UNP D3W0F1 D3W0F1_9VIRU 2 393 SEQADV 4RGG GLY A 1 UNP D3W0F1 EXPRESSION TAG SEQADV 4RGG GLY B 1 UNP D3W0F1 EXPRESSION TAG SEQRES 1 A 393 GLY VAL LEU LYS GLY ILE ASN PHE ASP ARG SER ILE VAL SEQRES 2 A 393 THR PRO GLU ASN GLU ALA SER ILE LEU ASP LEU ALA MET SEQRES 3 A 393 GLN ASN ARG SER GLY VAL LEU ASP GLY MET THR ILE ASP SEQRES 4 A 393 ILE LEU ASN THR THR SER ASN GLN LEU ALA LEU PHE HIS SEQRES 5 A 393 GLY THR ALA VAL LEU GLN GLY TYR GLY ILE GLU ILE THR SEQRES 6 A 393 ARG ALA ALA ASN GLY ALA PRO ASP VAL LEU VAL ASP THR SEQRES 7 A 393 THR GLY GLN SER ASN GLU THR MET LEU LEU CYS LEU THR SEQRES 8 A 393 ILE ASP LEU ASN GLN VAL ASN VAL PRO SER GLY THR VAL SEQRES 9 A 393 GLY THR ASN THR TYR ALA VAL ASP TYR LYS GLN ILE ARG SEQRES 10 A 393 LEU GLU PHE LEU ASP VAL PRO THR LEU LEU LYS GLN TYR SEQRES 11 A 393 TRP ARG ASP HIS SER LEU HIS ASP LEU ILE ASP PRO ARG SEQRES 12 A 393 ARG VAL ILE SER MET PRO LEU TYR TRP ILE THR PHE GLY SEQRES 13 A 393 GLN THR GLY THR THR PRO LYS TYR GLU GLN ILE LYS SER SEQRES 14 A 393 ASN TYR ILE ASP GLY GLY ASN SER GLY ASN PRO ALA TYR SEQRES 15 A 393 GLY ILE ALA ALA ARG CYS GLU ASN PHE ASN HIS PHE ILE SEQRES 16 A 393 ASN LYS VAL ALA VAL GLN SER ILE PRO ILE ASN GLY VAL SEQRES 17 A 393 ALA ASN ARG PRO VAL SER SER THR ALA SER GLN LEU THR SEQRES 18 A 393 ASN TYR LYS VAL TRP ARG ASN PRO TYR LEU CYS SER GLN SEQRES 19 A 393 ASP PRO ARG ASP LYS PHE ALA PRO ASP ASN LEU VAL ILE SEQRES 20 A 393 GLU GLU ASP GLY ILE TYR ARG ILE ASP ILE SER GLY SER SEQRES 21 A 393 ILE ASN ILE ALA ASN TYR THR PHE PRO ALA SER GLY ASN SEQRES 22 A 393 SER TRP ARG VAL GLY GLY ARG TYR PHE GLN ILE VAL CYS SEQRES 23 A 393 ALA ARG ASN SER SER ALA ASN ASN LEU ALA GLU PHE GLY SEQRES 24 A 393 ALA GLU GLN HIS LEU PRO PRO SER GLY VAL TRP THR ARG SEQRES 25 A 393 ARG VAL LEU VAL GLY GLU TYR THR ALA GLY MET THR GLU SEQRES 26 A 393 GLN ALA PHE SER SER VAL ALA THR ILE SER LEU PHE LYS SEQRES 27 A 393 GLY ASP ASN PHE PHE LEU GLN PHE GLU THR GLY THR ASN SEQRES 28 A 393 THR SER ARG ASP SER ALA TYR ASN ASN GLY TYR GLY THR SEQRES 29 A 393 SER GLY THR HIS LEU ARG ASN PHE SER TYR THR LEU GLU SEQRES 30 A 393 ARG VAL GLY ASP LEU ASN GLY THR ALA TYR TYR ASP ASN SEQRES 31 A 393 GLY THR PHE SEQRES 1 B 393 GLY VAL LEU LYS GLY ILE ASN PHE ASP ARG SER ILE VAL SEQRES 2 B 393 THR PRO GLU ASN GLU ALA SER ILE LEU ASP LEU ALA MET SEQRES 3 B 393 GLN ASN ARG SER GLY VAL LEU ASP GLY MET THR ILE ASP SEQRES 4 B 393 ILE LEU ASN THR THR SER ASN GLN LEU ALA LEU PHE HIS SEQRES 5 B 393 GLY THR ALA VAL LEU GLN GLY TYR GLY ILE GLU ILE THR SEQRES 6 B 393 ARG ALA ALA ASN GLY ALA PRO ASP VAL LEU VAL ASP THR SEQRES 7 B 393 THR GLY GLN SER ASN GLU THR MET LEU LEU CYS LEU THR SEQRES 8 B 393 ILE ASP LEU ASN GLN VAL ASN VAL PRO SER GLY THR VAL SEQRES 9 B 393 GLY THR ASN THR TYR ALA VAL ASP TYR LYS GLN ILE ARG SEQRES 10 B 393 LEU GLU PHE LEU ASP VAL PRO THR LEU LEU LYS GLN TYR SEQRES 11 B 393 TRP ARG ASP HIS SER LEU HIS ASP LEU ILE ASP PRO ARG SEQRES 12 B 393 ARG VAL ILE SER MET PRO LEU TYR TRP ILE THR PHE GLY SEQRES 13 B 393 GLN THR GLY THR THR PRO LYS TYR GLU GLN ILE LYS SER SEQRES 14 B 393 ASN TYR ILE ASP GLY GLY ASN SER GLY ASN PRO ALA TYR SEQRES 15 B 393 GLY ILE ALA ALA ARG CYS GLU ASN PHE ASN HIS PHE ILE SEQRES 16 B 393 ASN LYS VAL ALA VAL GLN SER ILE PRO ILE ASN GLY VAL SEQRES 17 B 393 ALA ASN ARG PRO VAL SER SER THR ALA SER GLN LEU THR SEQRES 18 B 393 ASN TYR LYS VAL TRP ARG ASN PRO TYR LEU CYS SER GLN SEQRES 19 B 393 ASP PRO ARG ASP LYS PHE ALA PRO ASP ASN LEU VAL ILE SEQRES 20 B 393 GLU GLU ASP GLY ILE TYR ARG ILE ASP ILE SER GLY SER SEQRES 21 B 393 ILE ASN ILE ALA ASN TYR THR PHE PRO ALA SER GLY ASN SEQRES 22 B 393 SER TRP ARG VAL GLY GLY ARG TYR PHE GLN ILE VAL CYS SEQRES 23 B 393 ALA ARG ASN SER SER ALA ASN ASN LEU ALA GLU PHE GLY SEQRES 24 B 393 ALA GLU GLN HIS LEU PRO PRO SER GLY VAL TRP THR ARG SEQRES 25 B 393 ARG VAL LEU VAL GLY GLU TYR THR ALA GLY MET THR GLU SEQRES 26 B 393 GLN ALA PHE SER SER VAL ALA THR ILE SER LEU PHE LYS SEQRES 27 B 393 GLY ASP ASN PHE PHE LEU GLN PHE GLU THR GLY THR ASN SEQRES 28 B 393 THR SER ARG ASP SER ALA TYR ASN ASN GLY TYR GLY THR SEQRES 29 B 393 SER GLY THR HIS LEU ARG ASN PHE SER TYR THR LEU GLU SEQRES 30 B 393 ARG VAL GLY ASP LEU ASN GLY THR ALA TYR TYR ASP ASN SEQRES 31 B 393 GLY THR PHE HET GN1 A 401 19 HET GN1 B 401 19 HETNAM GN1 2-ACETAMIDO-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETSYN GN1 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D- HETSYN 2 GN1 GLUCOPYRANOSE; N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE; N- HETSYN 3 GN1 ACETYL-1-O-PHOSPHONO-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO- HETSYN 4 GN1 2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOSE; 2-ACETAMIDO-2- HETSYN 5 GN1 DEOXY-1-O-PHOSPHONO-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-1- HETSYN 6 GN1 O-PHOSPHONO-GLUCOSE FORMUL 3 GN1 2(C8 H16 N O9 P) FORMUL 5 HOH *502(H2 O) HELIX 1 1 THR A 14 MET A 26 1 13 HELIX 2 2 ASP A 39 THR A 43 5 5 HELIX 3 3 ASP A 122 GLN A 129 1 8 HELIX 4 4 LYS A 168 TYR A 171 5 4 HELIX 5 5 ALA A 270 SER A 274 5 5 HELIX 6 6 ALA A 296 ALA A 300 5 5 HELIX 7 7 TYR A 362 GLY A 366 5 5 HELIX 8 8 THR A 385 ASN A 390 1 6 HELIX 9 9 THR B 14 MET B 26 1 13 HELIX 10 10 ASP B 39 THR B 43 5 5 HELIX 11 11 ASP B 122 GLN B 129 1 8 HELIX 12 12 LYS B 168 TYR B 171 5 4 HELIX 13 13 ALA B 270 SER B 274 5 5 HELIX 14 14 ALA B 296 ALA B 300 5 5 HELIX 15 15 TYR B 362 GLY B 366 5 5 HELIX 16 16 THR B 385 ASN B 390 1 6 SHEET 1 A 3 GLY A 31 GLY A 35 0 SHEET 2 A 3 GLY A 53 LEU A 57 -1 O VAL A 56 N GLY A 31 SHEET 3 A 3 TYR A 60 ILE A 64 -1 O ILE A 64 N GLY A 53 SHEET 1 B 2 GLN A 47 LEU A 50 0 SHEET 2 B 2 VAL A 74 ASP A 77 -1 O VAL A 76 N LEU A 48 SHEET 1 C 4 ILE A 116 LEU A 121 0 SHEET 2 C 4 GLU A 84 ASP A 93 -1 N LEU A 87 O LEU A 121 SHEET 3 C 4 VAL A 145 PHE A 155 -1 O PHE A 155 N GLU A 84 SHEET 4 C 4 LYS A 163 GLN A 166 -1 O GLU A 165 N TRP A 152 SHEET 1 D 2 VAL A 99 SER A 101 0 SHEET 2 D 2 ALA A 110 ASP A 112 -1 O ALA A 110 N SER A 101 SHEET 1 E 4 PHE A 191 PHE A 194 0 SHEET 2 E 4 HIS A 368 GLY A 380 -1 O PHE A 372 N PHE A 191 SHEET 3 E 4 GLY A 183 CYS A 188 -1 N ALA A 186 O LEU A 376 SHEET 4 E 4 VAL A 225 ARG A 227 -1 O TRP A 226 N ARG A 187 SHEET 1 F 4 PHE A 191 PHE A 194 0 SHEET 2 F 4 HIS A 368 GLY A 380 -1 O PHE A 372 N PHE A 191 SHEET 3 F 4 GLY A 251 ASN A 262 -1 N ASN A 262 O HIS A 368 SHEET 4 F 4 GLU A 325 LEU A 336 -1 O ILE A 334 N TYR A 253 SHEET 1 G 4 VAL A 200 SER A 202 0 SHEET 2 G 4 ASN A 341 THR A 348 -1 O PHE A 346 N GLN A 201 SHEET 3 G 4 LEU A 245 ILE A 247 -1 N LEU A 245 O PHE A 342 SHEET 4 G 4 CYS A 232 GLN A 234 -1 N SER A 233 O VAL A 246 SHEET 1 H 4 VAL A 200 SER A 202 0 SHEET 2 H 4 ASN A 341 THR A 348 -1 O PHE A 346 N GLN A 201 SHEET 3 H 4 TYR A 281 ASN A 289 -1 N GLN A 283 O GLU A 347 SHEET 4 H 4 ARG A 312 TYR A 319 -1 O ARG A 313 N CYS A 286 SHEET 1 I 2 VAL A 208 PRO A 212 0 SHEET 2 I 2 SER A 218 ASN A 222 -1 O GLN A 219 N ARG A 211 SHEET 1 J 3 GLY B 31 GLY B 35 0 SHEET 2 J 3 GLY B 53 LEU B 57 -1 O VAL B 56 N GLY B 31 SHEET 3 J 3 TYR B 60 ILE B 64 -1 O ILE B 64 N GLY B 53 SHEET 1 K 2 GLN B 47 LEU B 50 0 SHEET 2 K 2 VAL B 74 ASP B 77 -1 O VAL B 76 N LEU B 48 SHEET 1 L 4 ILE B 116 LEU B 121 0 SHEET 2 L 4 GLU B 84 ASP B 93 -1 N LEU B 87 O LEU B 121 SHEET 3 L 4 VAL B 145 PHE B 155 -1 O PHE B 155 N GLU B 84 SHEET 4 L 4 LYS B 163 GLN B 166 -1 O GLU B 165 N TRP B 152 SHEET 1 M 2 VAL B 99 SER B 101 0 SHEET 2 M 2 ALA B 110 ASP B 112 -1 O ASP B 112 N VAL B 99 SHEET 1 N 4 PHE B 191 PHE B 194 0 SHEET 2 N 4 HIS B 368 GLY B 380 -1 O PHE B 372 N PHE B 191 SHEET 3 N 4 GLY B 183 CYS B 188 -1 N ALA B 185 O LEU B 376 SHEET 4 N 4 VAL B 225 ARG B 227 -1 O TRP B 226 N ARG B 187 SHEET 1 O 4 PHE B 191 PHE B 194 0 SHEET 2 O 4 HIS B 368 GLY B 380 -1 O PHE B 372 N PHE B 191 SHEET 3 O 4 GLY B 251 ASN B 262 -1 N ASN B 262 O HIS B 368 SHEET 4 O 4 GLU B 325 LEU B 336 -1 O ILE B 334 N TYR B 253 SHEET 1 P 4 VAL B 200 SER B 202 0 SHEET 2 P 4 ASN B 341 THR B 348 -1 O PHE B 346 N GLN B 201 SHEET 3 P 4 LEU B 245 ILE B 247 -1 N LEU B 245 O PHE B 342 SHEET 4 P 4 CYS B 232 GLN B 234 -1 N SER B 233 O VAL B 246 SHEET 1 Q 4 VAL B 200 SER B 202 0 SHEET 2 Q 4 ASN B 341 THR B 348 -1 O PHE B 346 N GLN B 201 SHEET 3 Q 4 TYR B 281 ASN B 289 -1 N GLN B 283 O GLU B 347 SHEET 4 Q 4 ARG B 312 TYR B 319 -1 O LEU B 315 N ILE B 284 SHEET 1 R 2 VAL B 208 PRO B 212 0 SHEET 2 R 2 SER B 218 ASN B 222 -1 O GLN B 219 N ARG B 211 CISPEP 1 ALA A 71 PRO A 72 0 -6.79 CISPEP 2 ALA B 71 PRO B 72 0 -5.17 CRYST1 165.910 165.910 165.910 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006027 0.00000