data_4RHF # _entry.id 4RHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RHF RCSB RCSB087350 WWPDB D_1000087350 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4RHE _pdbx_database_related.details 'Crystal structure of wild type UbiX' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RHF _pdbx_database_status.recvd_initial_deposition_date 2014-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Do, H.' 1 'Kim, S.J.' 2 'Lee, C.W.' 3 'Kim, H.-W.' 4 'Park, H.H.' 5 'Kim, H.M.' 6 'Park, H.' 7 'Park, H.J.' 8 'Lee, J.H.' 9 # _citation.id primary _citation.title ;Crystal structure of UbiX, an aromatic acid decarboxylase from the psychrophilic bacterium Colwellia psychrerythraea that undergoes FMN-induced conformational changes. ; _citation.journal_abbrev 'Sci Rep' _citation.journal_volume 5 _citation.page_first 8196 _citation.page_last 8196 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-2322 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25645665 _citation.pdbx_database_id_DOI 10.1038/srep08196 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Do, H.' 1 primary 'Kim, S.J.' 2 primary 'Lee, C.W.' 3 primary 'Kim, H.W.' 4 primary 'Park, H.H.' 5 primary 'Kim, H.M.' 6 primary 'Park, H.' 7 primary 'Park, H.' 8 primary 'Lee, J.H.' 9 # _cell.entry_id 4RHF _cell.length_a 97.600 _cell.length_b 97.600 _cell.length_c 97.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RHF _symmetry.space_group_name_H-M 'P 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3-octaprenyl-4-hydroxybenzoate carboxy-lyase' 22842.277 1 4.1.1.- V47S ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMNNDFNGKITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRISLDTEVGVKIPSSPDAASKFLTEKYQAKDQQ ITVFGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLS QQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWGYNI ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMNNDFNGKITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRISLDTEVGVKIPSSPDAASKFLTEKYQAKDQQ ITVFGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLS QQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWGYNI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASN n 1 6 ASN n 1 7 ASP n 1 8 PHE n 1 9 ASN n 1 10 GLY n 1 11 LYS n 1 12 ILE n 1 13 THR n 1 14 LEU n 1 15 ALA n 1 16 ILE n 1 17 THR n 1 18 GLY n 1 19 ALA n 1 20 SER n 1 21 GLY n 1 22 ALA n 1 23 SER n 1 24 TYR n 1 25 ALA n 1 26 MET n 1 27 ARG n 1 28 LEU n 1 29 ILE n 1 30 GLU n 1 31 CYS n 1 32 LEU n 1 33 ILE n 1 34 ALA n 1 35 ALA n 1 36 ASN n 1 37 TYR n 1 38 GLN n 1 39 LEU n 1 40 TYR n 1 41 ILE n 1 42 LEU n 1 43 CYS n 1 44 SER n 1 45 SER n 1 46 ALA n 1 47 GLY n 1 48 ARG n 1 49 ILE n 1 50 SER n 1 51 LEU n 1 52 ASP n 1 53 THR n 1 54 GLU n 1 55 VAL n 1 56 GLY n 1 57 VAL n 1 58 LYS n 1 59 ILE n 1 60 PRO n 1 61 SER n 1 62 SER n 1 63 PRO n 1 64 ASP n 1 65 ALA n 1 66 ALA n 1 67 SER n 1 68 LYS n 1 69 PHE n 1 70 LEU n 1 71 THR n 1 72 GLU n 1 73 LYS n 1 74 TYR n 1 75 GLN n 1 76 ALA n 1 77 LYS n 1 78 ASP n 1 79 GLN n 1 80 GLN n 1 81 ILE n 1 82 THR n 1 83 VAL n 1 84 PHE n 1 85 GLY n 1 86 LYS n 1 87 GLU n 1 88 GLN n 1 89 TRP n 1 90 PHE n 1 91 SER n 1 92 PRO n 1 93 VAL n 1 94 ALA n 1 95 SER n 1 96 GLY n 1 97 SER n 1 98 SER n 1 99 ALA n 1 100 PRO n 1 101 LYS n 1 102 GLN n 1 103 MET n 1 104 VAL n 1 105 VAL n 1 106 CYS n 1 107 PRO n 1 108 CYS n 1 109 SER n 1 110 THR n 1 111 GLY n 1 112 THR n 1 113 MET n 1 114 ALA n 1 115 ALA n 1 116 ILE n 1 117 CYS n 1 118 HIS n 1 119 GLY n 1 120 MET n 1 121 SER n 1 122 ASP n 1 123 ASN n 1 124 LEU n 1 125 ILE n 1 126 GLU n 1 127 ARG n 1 128 ALA n 1 129 ALA n 1 130 ASP n 1 131 VAL n 1 132 VAL n 1 133 ILE n 1 134 LYS n 1 135 GLU n 1 136 ARG n 1 137 GLY n 1 138 GLN n 1 139 LEU n 1 140 ILE n 1 141 LEU n 1 142 MET n 1 143 VAL n 1 144 ARG n 1 145 GLU n 1 146 THR n 1 147 PRO n 1 148 PHE n 1 149 SER n 1 150 THR n 1 151 LEU n 1 152 HIS n 1 153 LEU n 1 154 GLN n 1 155 ASN n 1 156 MET n 1 157 LEU n 1 158 SER n 1 159 LEU n 1 160 SER n 1 161 GLN n 1 162 GLN n 1 163 GLY n 1 164 VAL n 1 165 THR n 1 166 ILE n 1 167 MET n 1 168 PRO n 1 169 ALA n 1 170 SER n 1 171 PRO n 1 172 GLY n 1 173 PHE n 1 174 TYR n 1 175 HIS n 1 176 LYS n 1 177 VAL n 1 178 GLU n 1 179 THR n 1 180 ILE n 1 181 GLU n 1 182 ASP n 1 183 LEU n 1 184 ILE n 1 185 ASP n 1 186 PHE n 1 187 MET n 1 188 VAL n 1 189 GLY n 1 190 ARG n 1 191 VAL n 1 192 LEU n 1 193 ASP n 1 194 HIS n 1 195 LEU n 1 196 GLY n 1 197 ILE n 1 198 GLU n 1 199 GLN n 1 200 ASP n 1 201 ILE n 1 202 MET n 1 203 PRO n 1 204 ARG n 1 205 TRP n 1 206 GLY n 1 207 TYR n 1 208 ASN n 1 209 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ubiX, CPS_0408' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Colwellia psychrerythraea 34H' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 167879 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q489U8_COLP3 _struct_ref.pdbx_db_accession Q489U8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNNDFNGKITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRIVLDTEVGVKIPSSPDAASKFLTEKYQAKDQQITV FGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLSQQG VTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWGYNI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RHF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q489U8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 206 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RHF GLY A 1 ? UNP Q489U8 ? ? 'EXPRESSION TAG' -2 1 1 4RHF SER A 2 ? UNP Q489U8 ? ? 'EXPRESSION TAG' -1 2 1 4RHF HIS A 3 ? UNP Q489U8 ? ? 'EXPRESSION TAG' 0 3 1 4RHF SER A 50 ? UNP Q489U8 VAL 47 'ENGINEERED MUTATION' 47 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RHF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.39 _exptl_crystal.density_percent_sol 63.77 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M tri-sodium citrate, pH 5.4, 0.5 M ammonium sulfate, 1.2 M lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-04-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97952 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 5C (4A)' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline '5C (4A)' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97952 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RHF _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 97.6 _reflns.d_resolution_high 1.764 _reflns.number_obs 30737 _reflns.number_all 30802 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.136 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 40.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.764 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.320 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 13.7 _reflns_shell.pdbx_redundancy 39.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RHF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29186 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 97.60 _refine.ls_d_res_high 1.764 _refine.ls_percent_reflns_obs 99.78 _refine.ls_R_factor_obs 0.23759 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23658 _refine.ls_R_factor_R_free 0.25669 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1549 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.904 _refine.correlation_coeff_Fo_to_Fc_free 0.892 _refine.B_iso_mean 24.390 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.112 _refine.pdbx_overall_ESU_R_Free 0.107 _refine.overall_SU_ML 0.074 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.216 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1522 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1586 _refine_hist.d_res_high 1.764 _refine_hist.d_res_low 97.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.019 ? 1558 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1500 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.229 1.973 ? 2110 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.980 3.000 ? 3462 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.089 5.000 ? 199 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.050 24.667 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.879 15.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.725 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.135 0.200 ? 245 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1740 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 331 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.276 2.249 ? 799 'X-RAY DIFFRACTION' ? r_mcbond_other 2.266 2.247 ? 798 'X-RAY DIFFRACTION' ? r_mcangle_it 3.176 3.364 ? 997 'X-RAY DIFFRACTION' ? r_mcangle_other 3.253 3.403 ? 998 'X-RAY DIFFRACTION' ? r_scbond_it 2.970 2.648 ? 759 'X-RAY DIFFRACTION' ? r_scbond_other 3.031 2.706 ? 752 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 4.298 3.915 ? 1102 'X-RAY DIFFRACTION' ? r_long_range_B_refined 5.543 19.115 ? 1735 'X-RAY DIFFRACTION' ? r_long_range_B_other 5.545 19.047 ? 1715 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.764 _refine_ls_shell.d_res_low 1.810 _refine_ls_shell.number_reflns_R_work 2149 _refine_ls_shell.R_factor_R_work 0.243 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.283 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4RHF _struct.title 'Crystal structure of UbiX mutant V47S from Colwellia psychrerythraea 34H' _struct.pdbx_descriptor '3-octaprenyl-4-hydroxybenzoate carboxy-lyase (E.C.4.1.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RHF _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'Rossmann fold, decarboxylation, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? ALA A 35 ? GLY A 18 ALA A 32 1 ? 15 HELX_P HELX_P2 2 SER A 44 ? GLY A 56 ? SER A 41 GLY A 53 1 ? 13 HELX_P HELX_P3 3 SER A 62 ? GLN A 75 ? SER A 59 GLN A 72 1 ? 14 HELX_P HELX_P4 4 SER A 91 ? SER A 95 ? SER A 88 SER A 92 5 ? 5 HELX_P HELX_P5 5 SER A 109 ? GLY A 119 ? SER A 106 GLY A 116 1 ? 11 HELX_P HELX_P6 6 ASN A 123 ? GLU A 135 ? ASN A 120 GLU A 132 1 ? 13 HELX_P HELX_P7 7 SER A 149 ? GLN A 162 ? SER A 146 GLN A 159 1 ? 14 HELX_P HELX_P8 8 THR A 179 ? LEU A 195 ? THR A 176 LEU A 192 1 ? 17 HELX_P HELX_P9 9 GLU A 198 ? MET A 202 ? GLU A 195 MET A 199 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 106 A . ? CYS 103 A PRO 107 A ? PRO 104 A 1 -10.43 2 THR 146 A . ? THR 143 A PRO 147 A ? PRO 144 A 1 -17.16 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 81 ? VAL A 83 ? ILE A 78 VAL A 80 A 2 GLN A 38 ? CYS A 43 ? GLN A 35 CYS A 40 A 3 LYS A 11 ? ILE A 16 ? LYS A 8 ILE A 13 A 4 GLN A 102 ? CYS A 108 ? GLN A 99 CYS A 105 A 5 GLN A 138 ? VAL A 143 ? GLN A 135 VAL A 140 A 6 THR A 165 ? ILE A 166 ? THR A 162 ILE A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 82 ? O THR A 79 N ILE A 41 ? N ILE A 38 A 2 3 O LEU A 42 ? O LEU A 39 N ILE A 16 ? N ILE A 13 A 3 4 N ALA A 15 ? N ALA A 12 O VAL A 104 ? O VAL A 101 A 4 5 N VAL A 105 ? N VAL A 102 O ILE A 140 ? O ILE A 137 A 5 6 N LEU A 139 ? N LEU A 136 O THR A 165 ? O THR A 162 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLY A 96 ? GLY A 93 . ? 8_454 ? 2 AC1 8 SER A 97 ? SER A 94 . ? 8_454 ? 3 AC1 8 ARG A 127 ? ARG A 124 . ? 8_454 ? 4 AC1 8 LYS A 134 ? LYS A 131 . ? 8_454 ? 5 AC1 8 THR A 146 ? THR A 143 . ? 1_555 ? 6 AC1 8 TYR A 174 ? TYR A 171 . ? 3_454 ? 7 AC1 8 ARG A 190 ? ARG A 187 . ? 3_454 ? 8 AC1 8 HOH D . ? HOH A 424 . ? 1_555 ? 9 AC2 8 THR A 17 ? THR A 14 . ? 1_555 ? 10 AC2 8 GLY A 18 ? GLY A 15 . ? 1_555 ? 11 AC2 8 SER A 44 ? SER A 41 . ? 1_555 ? 12 AC2 8 ALA A 46 ? ALA A 43 . ? 1_555 ? 13 AC2 8 SER A 109 ? SER A 106 . ? 1_555 ? 14 AC2 8 THR A 112 ? THR A 109 . ? 1_555 ? 15 AC2 8 HOH D . ? HOH A 438 . ? 1_555 ? 16 AC2 8 HOH D . ? HOH A 448 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RHF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RHF _atom_sites.fract_transf_matrix[1][1] 0.010246 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010246 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010246 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ASN 5 2 ? ? ? A . n A 1 6 ASN 6 3 ? ? ? A . n A 1 7 ASP 7 4 4 ASP ASP A . n A 1 8 PHE 8 5 5 PHE PHE A . n A 1 9 ASN 9 6 6 ASN ASN A . n A 1 10 GLY 10 7 7 GLY GLY A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 THR 13 10 10 THR THR A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 ILE 16 13 13 ILE ILE A . n A 1 17 THR 17 14 14 THR THR A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 SER 20 17 17 SER SER A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 SER 23 20 20 SER SER A . n A 1 24 TYR 24 21 21 TYR TYR A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 MET 26 23 23 MET MET A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 ILE 29 26 26 ILE ILE A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 CYS 31 28 28 CYS CYS A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 TYR 37 34 34 TYR TYR A . n A 1 38 GLN 38 35 35 GLN GLN A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 TYR 40 37 37 TYR TYR A . n A 1 41 ILE 41 38 38 ILE ILE A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 CYS 43 40 40 CYS CYS A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 SER 45 42 42 SER SER A . n A 1 46 ALA 46 43 43 ALA ALA A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 ARG 48 45 45 ARG ARG A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 PRO 60 57 57 PRO PRO A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 SER 62 59 59 SER SER A . n A 1 63 PRO 63 60 60 PRO PRO A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 LYS 68 65 65 LYS LYS A . n A 1 69 PHE 69 66 66 PHE PHE A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 LYS 73 70 70 LYS LYS A . n A 1 74 TYR 74 71 71 TYR TYR A . n A 1 75 GLN 75 72 72 GLN GLN A . n A 1 76 ALA 76 73 73 ALA ALA A . n A 1 77 LYS 77 74 74 LYS LYS A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 GLN 80 77 77 GLN GLN A . n A 1 81 ILE 81 78 78 ILE ILE A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 PHE 84 81 81 PHE PHE A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 LYS 86 83 83 LYS LYS A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 GLN 88 85 85 GLN GLN A . n A 1 89 TRP 89 86 86 TRP TRP A . n A 1 90 PHE 90 87 87 PHE PHE A . n A 1 91 SER 91 88 88 SER SER A . n A 1 92 PRO 92 89 89 PRO PRO A . n A 1 93 VAL 93 90 90 VAL VAL A . n A 1 94 ALA 94 91 91 ALA ALA A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 SER 97 94 94 SER SER A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 ALA 99 96 96 ALA ALA A . n A 1 100 PRO 100 97 97 PRO PRO A . n A 1 101 LYS 101 98 98 LYS LYS A . n A 1 102 GLN 102 99 99 GLN GLN A . n A 1 103 MET 103 100 100 MET MET A . n A 1 104 VAL 104 101 101 VAL VAL A . n A 1 105 VAL 105 102 102 VAL VAL A . n A 1 106 CYS 106 103 103 CYS CYS A . n A 1 107 PRO 107 104 104 PRO PRO A . n A 1 108 CYS 108 105 105 CYS CYS A . n A 1 109 SER 109 106 106 SER SER A . n A 1 110 THR 110 107 107 THR THR A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 THR 112 109 109 THR THR A . n A 1 113 MET 113 110 110 MET MET A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 ALA 115 112 112 ALA ALA A . n A 1 116 ILE 116 113 113 ILE ILE A . n A 1 117 CYS 117 114 114 CYS CYS A . n A 1 118 HIS 118 115 115 HIS HIS A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 MET 120 117 117 MET MET A . n A 1 121 SER 121 118 118 SER SER A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 ASN 123 120 120 ASN ASN A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 ILE 125 122 122 ILE ILE A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 ARG 127 124 124 ARG ARG A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 ASP 130 127 127 ASP ASP A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 VAL 132 129 129 VAL VAL A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 ARG 136 133 133 ARG ARG A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 GLN 138 135 135 GLN GLN A . n A 1 139 LEU 139 136 136 LEU LEU A . n A 1 140 ILE 140 137 137 ILE ILE A . n A 1 141 LEU 141 138 138 LEU LEU A . n A 1 142 MET 142 139 139 MET MET A . n A 1 143 VAL 143 140 140 VAL VAL A . n A 1 144 ARG 144 141 141 ARG ARG A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 THR 146 143 143 THR THR A . n A 1 147 PRO 147 144 144 PRO PRO A . n A 1 148 PHE 148 145 145 PHE PHE A . n A 1 149 SER 149 146 146 SER SER A . n A 1 150 THR 150 147 147 THR THR A . n A 1 151 LEU 151 148 148 LEU LEU A . n A 1 152 HIS 152 149 149 HIS HIS A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 GLN 154 151 151 GLN GLN A . n A 1 155 ASN 155 152 152 ASN ASN A . n A 1 156 MET 156 153 153 MET MET A . n A 1 157 LEU 157 154 154 LEU LEU A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 SER 160 157 157 SER SER A . n A 1 161 GLN 161 158 158 GLN GLN A . n A 1 162 GLN 162 159 159 GLN GLN A . n A 1 163 GLY 163 160 160 GLY GLY A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 THR 165 162 162 THR THR A . n A 1 166 ILE 166 163 163 ILE ILE A . n A 1 167 MET 167 164 164 MET MET A . n A 1 168 PRO 168 165 165 PRO PRO A . n A 1 169 ALA 169 166 166 ALA ALA A . n A 1 170 SER 170 167 167 SER SER A . n A 1 171 PRO 171 168 168 PRO PRO A . n A 1 172 GLY 172 169 169 GLY GLY A . n A 1 173 PHE 173 170 170 PHE PHE A . n A 1 174 TYR 174 171 171 TYR TYR A . n A 1 175 HIS 175 172 172 HIS HIS A . n A 1 176 LYS 176 173 173 LYS LYS A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 GLU 178 175 175 GLU GLU A . n A 1 179 THR 179 176 176 THR THR A . n A 1 180 ILE 180 177 177 ILE ILE A . n A 1 181 GLU 181 178 178 GLU GLU A . n A 1 182 ASP 182 179 179 ASP ASP A . n A 1 183 LEU 183 180 180 LEU LEU A . n A 1 184 ILE 184 181 181 ILE ILE A . n A 1 185 ASP 185 182 182 ASP ASP A . n A 1 186 PHE 186 183 183 PHE PHE A . n A 1 187 MET 187 184 184 MET MET A . n A 1 188 VAL 188 185 185 VAL VAL A . n A 1 189 GLY 189 186 186 GLY GLY A . n A 1 190 ARG 190 187 187 ARG ARG A . n A 1 191 VAL 191 188 188 VAL VAL A . n A 1 192 LEU 192 189 189 LEU LEU A . n A 1 193 ASP 193 190 190 ASP ASP A . n A 1 194 HIS 194 191 191 HIS HIS A . n A 1 195 LEU 195 192 192 LEU LEU A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 ILE 197 194 194 ILE ILE A . n A 1 198 GLU 198 195 195 GLU GLU A . n A 1 199 GLN 199 196 196 GLN GLN A . n A 1 200 ASP 200 197 197 ASP ASP A . n A 1 201 ILE 201 198 198 ILE ILE A . n A 1 202 MET 202 199 199 MET MET A . n A 1 203 PRO 203 200 200 PRO PRO A . n A 1 204 ARG 204 201 201 ARG ARG A . n A 1 205 TRP 205 202 202 TRP TRP A . n A 1 206 GLY 206 203 203 GLY GLY A . n A 1 207 TYR 207 204 ? ? ? A . n A 1 208 ASN 208 205 ? ? ? A . n A 1 209 ILE 209 206 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 42190 ? 1 MORE -522 ? 1 'SSA (A^2)' 78080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_454 -x-1,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 4 'crystal symmetry operation' 4_544 x,-y-1,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 5 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 6 'crystal symmetry operation' 6_544 z,-x-1,-y-1 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 7 'crystal symmetry operation' 7_445 -z-1,-x-1,y 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 8 'crystal symmetry operation' 8_454 -z-1,x,-y-1 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 9 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 10 'crystal symmetry operation' 10_454 -y-1,z,-x-1 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 11 'crystal symmetry operation' 11_544 y,-z-1,-x-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 -1.0000000000 0.0000000000 0.0000000000 -97.6000000000 12 'crystal symmetry operation' 12_445 -y-1,-z-1,x 0.0000000000 -1.0000000000 0.0000000000 -97.6000000000 0.0000000000 0.0000000000 -1.0000000000 -97.6000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-02-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MERLOT phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 167 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 167 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.333 _pdbx_validate_rmsd_bond.bond_target_value 1.418 _pdbx_validate_rmsd_bond.bond_deviation -0.085 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 124 ? ? CZ A ARG 124 ? ? NH1 A ARG 124 ? ? 123.33 120.30 3.03 0.50 N 2 1 NE A ARG 141 ? ? CZ A ARG 141 ? ? NH2 A ARG 141 ? ? 123.86 120.30 3.56 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 76 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 59.96 _pdbx_validate_torsion.psi 7.09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A ASN 2 ? A ASN 5 6 1 Y 1 A ASN 3 ? A ASN 6 7 1 Y 1 A TYR 204 ? A TYR 207 8 1 Y 1 A ASN 205 ? A ASN 208 9 1 Y 1 A ILE 206 ? A ILE 209 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 1 SO4 SO4 A . C 2 SO4 1 302 2 SO4 SO4 A . D 3 HOH 1 401 1 HOH HOH A . D 3 HOH 2 402 2 HOH HOH A . D 3 HOH 3 403 3 HOH HOH A . D 3 HOH 4 404 4 HOH HOH A . D 3 HOH 5 405 5 HOH HOH A . D 3 HOH 6 406 6 HOH HOH A . D 3 HOH 7 407 7 HOH HOH A . D 3 HOH 8 408 8 HOH HOH A . D 3 HOH 9 409 9 HOH HOH A . D 3 HOH 10 410 10 HOH HOH A . D 3 HOH 11 411 11 HOH HOH A . D 3 HOH 12 412 12 HOH HOH A . D 3 HOH 13 413 13 HOH HOH A . D 3 HOH 14 414 14 HOH HOH A . D 3 HOH 15 415 15 HOH HOH A . D 3 HOH 16 416 16 HOH HOH A . D 3 HOH 17 417 17 HOH HOH A . D 3 HOH 18 418 18 HOH HOH A . D 3 HOH 19 419 19 HOH HOH A . D 3 HOH 20 420 20 HOH HOH A . D 3 HOH 21 421 21 HOH HOH A . D 3 HOH 22 422 22 HOH HOH A . D 3 HOH 23 423 23 HOH HOH A . D 3 HOH 24 424 24 HOH HOH A . D 3 HOH 25 425 25 HOH HOH A . D 3 HOH 26 426 26 HOH HOH A . D 3 HOH 27 427 27 HOH HOH A . D 3 HOH 28 428 28 HOH HOH A . D 3 HOH 29 429 29 HOH HOH A . D 3 HOH 30 430 30 HOH HOH A . D 3 HOH 31 431 31 HOH HOH A . D 3 HOH 32 432 32 HOH HOH A . D 3 HOH 33 433 33 HOH HOH A . D 3 HOH 34 434 34 HOH HOH A . D 3 HOH 35 435 35 HOH HOH A . D 3 HOH 36 436 36 HOH HOH A . D 3 HOH 37 437 37 HOH HOH A . D 3 HOH 38 438 38 HOH HOH A . D 3 HOH 39 439 39 HOH HOH A . D 3 HOH 40 440 40 HOH HOH A . D 3 HOH 41 441 41 HOH HOH A . D 3 HOH 42 442 42 HOH HOH A . D 3 HOH 43 443 43 HOH HOH A . D 3 HOH 44 444 44 HOH HOH A . D 3 HOH 45 445 45 HOH HOH A . D 3 HOH 46 446 46 HOH HOH A . D 3 HOH 47 447 47 HOH HOH A . D 3 HOH 48 448 48 HOH HOH A . D 3 HOH 49 449 49 HOH HOH A . D 3 HOH 50 450 50 HOH HOH A . D 3 HOH 51 451 51 HOH HOH A . D 3 HOH 52 452 52 HOH HOH A . D 3 HOH 53 453 53 HOH HOH A . D 3 HOH 54 454 54 HOH HOH A . #