HEADER SUGAR BINDING PROTEIN 02-OCT-14 4RHR TITLE CRYSTAL STRUCTURE OF PLTB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERTUSSIS-LIKE TOXIN SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 90370; SOURCE 5 GENE: STY1891, T1107; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS SUGAR BINDING MOTIF, SUGAR BINDING, SUGAR, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.GAO,J.WANG,J.GALAN REVDAT 2 17-DEC-14 4RHR 1 JRNL REVDAT 1 29-OCT-14 4RHR 0 JRNL AUTH L.DENG,J.SONG,X.GAO,J.WANG,H.YU,X.CHEN,N.VARKI, JRNL AUTH 2 Y.NAITO-MATSUI,J.E.GALAN,A.VARKI JRNL TITL HOST ADAPTATION OF A BACTERIAL TOXIN FROM THE HUMAN PATHOGEN JRNL TITL 2 SALMONELLA TYPHI. JRNL REF CELL(CAMBRIDGE,MASS.) V. 159 1290 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 25480294 JRNL DOI 10.1016/J.CELL.2014.10.057 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1701) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 41691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9391 - 5.1200 0.99 2841 134 0.1442 0.1683 REMARK 3 2 5.1200 - 4.0669 1.00 2721 154 0.1208 0.1424 REMARK 3 3 4.0669 - 3.5536 1.00 2694 140 0.1412 0.1669 REMARK 3 4 3.5536 - 3.2291 1.00 2682 144 0.1497 0.1866 REMARK 3 5 3.2291 - 2.9978 1.00 2686 142 0.1696 0.1956 REMARK 3 6 2.9978 - 2.8212 0.97 2545 150 0.1898 0.2172 REMARK 3 7 2.8212 - 2.6800 0.97 2606 126 0.1882 0.2443 REMARK 3 8 2.6800 - 2.5634 0.99 2633 123 0.1701 0.2519 REMARK 3 9 2.5634 - 2.4648 0.99 2633 129 0.1734 0.2040 REMARK 3 10 2.4648 - 2.3798 0.99 2613 145 0.1694 0.2360 REMARK 3 11 2.3798 - 2.3054 0.99 2628 139 0.1680 0.1944 REMARK 3 12 2.3054 - 2.2395 0.99 2595 133 0.1666 0.2284 REMARK 3 13 2.2395 - 2.1805 0.99 2610 142 0.1650 0.2431 REMARK 3 14 2.1805 - 2.1274 0.99 2588 156 0.1681 0.2075 REMARK 3 15 2.1274 - 2.0790 0.96 2517 142 0.1798 0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4572 REMARK 3 ANGLE : 1.157 6219 REMARK 3 CHIRALITY : 0.045 691 REMARK 3 PLANARITY : 0.006 790 REMARK 3 DIHEDRAL : 12.379 1561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A REMARK 3 ORIGIN FOR THE GROUP (A): 63.6440 17.3935 9.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1581 REMARK 3 T33: 0.1800 T12: -0.0090 REMARK 3 T13: -0.0033 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1974 L22: 1.7962 REMARK 3 L33: 1.2270 L12: 0.1696 REMARK 3 L13: 0.1661 L23: -0.1962 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0227 S13: -0.1425 REMARK 3 S21: 0.0055 S22: -0.0163 S23: 0.1738 REMARK 3 S31: 0.0927 S32: -0.0661 S33: 0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain B REMARK 3 ORIGIN FOR THE GROUP (A): 67.1721 40.6419 10.8968 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.1565 REMARK 3 T33: 0.1765 T12: 0.0235 REMARK 3 T13: -0.0080 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.3451 L22: 1.2183 REMARK 3 L33: 1.1834 L12: 0.2999 REMARK 3 L13: 0.1346 L23: 0.6323 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0190 S13: 0.1252 REMARK 3 S21: -0.0652 S22: 0.0186 S23: 0.1667 REMARK 3 S31: -0.1027 S32: -0.0448 S33: -0.0178 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain C REMARK 3 ORIGIN FOR THE GROUP (A): 83.1557 6.5275 17.6884 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2053 REMARK 3 T33: 0.2849 T12: 0.0242 REMARK 3 T13: 0.0401 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.8995 L22: 2.0403 REMARK 3 L33: 1.9165 L12: 0.5515 REMARK 3 L13: -0.1509 L23: -0.4007 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.0813 S13: -0.3296 REMARK 3 S21: 0.0120 S22: -0.0351 S23: -0.3196 REMARK 3 S31: 0.1783 S32: 0.2755 S33: 0.0942 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain D REMARK 3 ORIGIN FOR THE GROUP (A): 98.9280 23.0182 23.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.3475 REMARK 3 T33: 0.3003 T12: 0.0121 REMARK 3 T13: -0.0137 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.7174 L22: 2.0057 REMARK 3 L33: 1.6896 L12: 0.5450 REMARK 3 L13: 0.2392 L23: -0.2026 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.3801 S13: -0.1240 REMARK 3 S21: 0.2008 S22: -0.0876 S23: -0.3494 REMARK 3 S31: 0.0071 S32: 0.2180 S33: 0.0637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain E REMARK 3 ORIGIN FOR THE GROUP (A): 89.1770 44.2808 19.2471 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.2281 REMARK 3 T33: 0.2251 T12: -0.0196 REMARK 3 T13: 0.0214 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 2.4716 L22: 1.8208 REMARK 3 L33: 1.2320 L12: -0.4119 REMARK 3 L13: -0.4552 L23: 0.2203 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.1775 S13: 0.2242 REMARK 3 S21: 0.0900 S22: 0.0519 S23: -0.1394 REMARK 3 S31: -0.1430 S32: 0.1903 S33: -0.0599 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB087361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.079 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% (W/V) PEG1500 AND 0.1 M SODIUM REMARK 280 ACETATE, PH5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.04550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.09550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.04550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 138 REMARK 465 GLU A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 GLU B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 LEU C 138 REMARK 465 GLU C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 LEU D 138 REMARK 465 GLU D 139 REMARK 465 HIS D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 LEU E 138 REMARK 465 GLU E 139 REMARK 465 HIS E 140 REMARK 465 HIS E 141 REMARK 465 HIS E 142 REMARK 465 HIS E 143 REMARK 465 HIS E 144 REMARK 465 HIS E 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 138 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 341 O HOH A 382 1.86 REMARK 500 O HOH D 342 O HOH D 346 1.91 REMARK 500 O HOH B 276 O HOH B 281 1.97 REMARK 500 O SER E 73 O HOH E 237 2.03 REMARK 500 O HOH C 340 O HOH C 362 2.05 REMARK 500 O HOH E 259 O HOH E 260 2.08 REMARK 500 O HOH C 340 O HOH C 344 2.10 REMARK 500 O HOH C 361 O HOH C 371 2.10 REMARK 500 O HOH D 340 O HOH D 341 2.11 REMARK 500 O THR B 65 O HOH B 216 2.11 REMARK 500 O HOH E 264 O HOH E 267 2.11 REMARK 500 O HOH B 260 O HOH B 265 2.11 REMARK 500 O HOH A 349 O HOH A 370 2.19 REMARK 500 O HOH E 249 O HOH E 257 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 348 O HOH B 249 3745 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 166.03 74.08 REMARK 500 PHE A 117 -101.82 -116.33 REMARK 500 THR A 131 -67.60 -100.87 REMARK 500 LYS B 74 17.26 57.89 REMARK 500 SER B 76 168.41 72.79 REMARK 500 PHE B 117 -102.10 -118.27 REMARK 500 LYS C 74 17.24 58.65 REMARK 500 SER C 76 167.94 72.39 REMARK 500 PHE C 117 -102.54 -117.34 REMARK 500 SER C 129 -72.81 -87.04 REMARK 500 ALA C 130 -82.70 -70.08 REMARK 500 THR C 131 -152.52 -99.38 REMARK 500 SER D 76 168.49 72.27 REMARK 500 PHE D 117 -101.95 -117.17 REMARK 500 THR D 131 -67.47 -101.65 REMARK 500 SER E 76 167.29 73.36 REMARK 500 PHE E 117 -101.58 -119.14 REMARK 500 SER E 129 -158.32 -85.97 REMARK 500 THR E 131 -69.29 -101.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6L RELATED DB: PDB REMARK 900 B SUBUNIT OF TYPHOID TOXIN DBREF 4RHR A 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHR B 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHR C 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHR D 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHR E 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 SEQADV 4RHR LEU A 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR GLU A 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS A 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR LEU B 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR GLU B 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS B 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR LEU C 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR GLU C 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS C 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR LEU D 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR GLU D 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS D 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR LEU E 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR GLU E 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHR HIS E 145 UNP Q8Z6A3 EXPRESSION TAG SEQRES 1 A 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 A 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 A 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 A 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 A 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 A 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 A 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 A 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 A 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 B 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 B 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 B 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 B 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 B 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 B 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 B 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 B 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 C 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 C 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 C 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 C 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 C 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 C 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 C 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 C 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 D 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 D 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 D 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 D 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 D 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 D 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 D 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 D 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS SEQRES 1 E 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 E 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 E 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 E 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 E 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 E 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 E 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 E 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 E 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 E 122 HIS HIS HIS HIS HIS HET ACT A 201 4 HET ACT C 201 4 HET ACT C 202 4 HET ACT D 201 4 HETNAM ACT ACETATE ION FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 10 HOH *377(H2 O) HELIX 1 1 TRP A 78 PRO A 80 5 3 HELIX 2 2 SER A 81 GLY A 96 1 16 HELIX 3 3 TYR A 110 PHE A 117 1 8 HELIX 4 4 TRP B 78 PRO B 80 5 3 HELIX 5 5 SER B 81 GLY B 96 1 16 HELIX 6 6 TYR B 110 PHE B 117 1 8 HELIX 7 7 TRP C 78 PRO C 80 5 3 HELIX 8 8 SER C 81 GLY C 96 1 16 HELIX 9 9 TYR C 110 PHE C 117 1 8 HELIX 10 10 TRP D 78 PRO D 80 5 3 HELIX 11 11 SER D 81 GLY D 96 1 16 HELIX 12 12 TYR D 110 PHE D 117 1 8 HELIX 13 13 TRP E 78 PRO E 80 5 3 HELIX 14 14 SER E 81 GLY E 96 1 16 HELIX 15 15 TYR E 110 PHE E 117 1 8 SHEET 1 A12 ALA B 32 ILE B 47 0 SHEET 2 A12 VAL B 99 GLN B 104 -1 O VAL B 99 N GLU B 37 SHEET 3 A12 ALA B 121 SER B 127 -1 O VAL B 123 N HIS B 102 SHEET 4 A12 ALA A 32 ILE A 47 -1 N VAL A 44 O LEU B 125 SHEET 5 A12 SER A 50 LYS A 59 -1 O VAL A 58 N VAL A 38 SHEET 6 A12 VAL A 67 VAL A 72 -1 O ALA A 69 N ILE A 55 SHEET 7 A12 ALA A 121 SER A 127 1 O LEU A 122 N CYS A 70 SHEET 8 A12 ALA C 32 ILE C 47 -1 O VAL C 44 N LEU A 125 SHEET 9 A12 SER C 50 LYS C 59 -1 O LYS C 56 N SER C 40 SHEET 10 A12 VAL C 67 VAL C 72 -1 O VAL C 67 N THR C 57 SHEET 11 A12 ALA C 121 SER C 127 1 O LEU C 122 N CYS C 70 SHEET 12 A12 ALA D 32 ILE D 47 -1 O VAL D 44 N LEU C 125 SHEET 1 B16 ALA B 32 ILE B 47 0 SHEET 2 B16 SER B 50 LYS B 59 -1 O VAL B 58 N VAL B 38 SHEET 3 B16 VAL B 67 VAL B 72 -1 O ALA B 69 N ILE B 55 SHEET 4 B16 ALA B 121 SER B 127 1 O LEU B 122 N CYS B 70 SHEET 5 B16 ALA A 32 ILE A 47 -1 N VAL A 44 O LEU B 125 SHEET 6 B16 VAL A 99 GLN A 104 -1 O VAL A 99 N GLU A 37 SHEET 7 B16 ALA A 121 SER A 127 -1 O VAL A 123 N HIS A 102 SHEET 8 B16 ALA C 32 ILE C 47 -1 O VAL C 44 N LEU A 125 SHEET 9 B16 VAL C 99 GLN C 104 -1 O VAL C 99 N GLU C 37 SHEET 10 B16 ALA C 121 SER C 127 -1 O ALA C 121 N GLN C 104 SHEET 11 B16 ALA D 32 ILE D 47 -1 O VAL D 44 N LEU C 125 SHEET 12 B16 VAL D 99 GLN D 104 -1 O VAL D 99 N GLU D 37 SHEET 13 B16 ALA D 121 SER D 127 -1 O VAL D 123 N HIS D 102 SHEET 14 B16 ALA E 32 ILE E 47 -1 O VAL E 44 N LEU D 125 SHEET 15 B16 VAL E 99 GLN E 104 -1 O VAL E 99 N GLU E 37 SHEET 16 B16 ALA E 121 SER E 127 -1 O VAL E 123 N HIS E 102 SHEET 1 C 9 ALA D 32 ILE D 47 0 SHEET 2 C 9 SER D 50 LYS D 59 -1 O VAL D 58 N VAL D 38 SHEET 3 C 9 VAL D 67 VAL D 72 -1 O ALA D 71 N PHE D 53 SHEET 4 C 9 ALA D 121 SER D 127 1 O LEU D 122 N CYS D 70 SHEET 5 C 9 ALA E 32 ILE E 47 -1 O VAL E 44 N LEU D 125 SHEET 6 C 9 SER E 50 LYS E 59 -1 O VAL E 58 N VAL E 38 SHEET 7 C 9 VAL E 67 VAL E 72 -1 O ALA E 69 N ILE E 55 SHEET 8 C 9 ALA E 121 SER E 127 1 O LEU E 122 N CYS E 70 SHEET 9 C 9 ALA B 32 ILE B 47 -1 N VAL B 44 O LEU E 125 SSBOND 1 CYS A 54 CYS A 70 1555 1555 2.06 SSBOND 2 CYS A 128 CYS A 133 1555 1555 2.03 SSBOND 3 CYS B 54 CYS B 70 1555 1555 2.06 SSBOND 4 CYS B 128 CYS B 133 1555 1555 2.05 SSBOND 5 CYS C 54 CYS C 70 1555 1555 2.05 SSBOND 6 CYS C 128 CYS C 133 1555 1555 2.03 SSBOND 7 CYS D 54 CYS D 70 1555 1555 2.06 SSBOND 8 CYS D 128 CYS D 133 1555 1555 2.04 SSBOND 9 CYS E 54 CYS E 70 1555 1555 2.06 SSBOND 10 CYS E 128 CYS E 133 1555 1555 2.05 SITE 1 AC1 5 GLN A 75 TRP A 108 THR A 109 TYR A 110 SITE 2 AC1 5 PHE A 113 SITE 1 AC2 8 TRP A 25 ASP B 48 THR B 49 TYR C 110 SITE 2 AC2 8 PRO C 111 LEU C 112 PHE C 113 HOH C 342 SITE 1 AC3 5 TYR B 110 PRO B 111 LEU B 112 ASP C 48 SITE 2 AC3 5 THR C 49 SITE 1 AC4 4 GLN D 75 TRP D 108 THR D 109 TYR D 110 CRYST1 68.091 97.190 104.191 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009598 0.00000