HEADER HYDROLASE 05-OCT-14 4RI5 TITLE CRYSTAL STRUCTURE OF PTPN3 (PTPH1) D811E MUTANT IN COMPLEX WITH TITLE 2 METAVANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 628-909); COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPH1, PTPN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.-E.CHEN,T.C.MENG,A.H.-J.WANG REVDAT 3 08-NOV-23 4RI5 1 REMARK SEQADV REVDAT 2 18-JUL-18 4RI5 1 JRNL REMARK REVDAT 1 11-MAR-15 4RI5 0 JRNL AUTH K.E.CHEN,M.Y.LI,C.C.CHOU,M.R.HO,G.C.CHEN,T.C.MENG,A.H.WANG JRNL TITL SUBSTRATE SPECIFICITY AND PLASTICITY OF FERM-CONTAINING JRNL TITL 2 PROTEIN TYROSINE PHOSPHATASES. JRNL REF STRUCTURE V. 23 653 2015 JRNL REFN ISSN 1878-4186 JRNL PMID 25728925 JRNL DOI 10.1016/J.STR.2015.01.017 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 146326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 7401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5404 - 3.9102 0.86 4992 270 0.1577 0.1881 REMARK 3 2 3.9102 - 3.1054 0.93 5220 315 0.1509 0.1536 REMARK 3 3 3.1054 - 2.7134 0.96 5365 268 0.1590 0.1710 REMARK 3 4 2.7134 - 2.4655 0.98 5449 294 0.1513 0.1769 REMARK 3 5 2.4655 - 2.2889 0.99 5517 284 0.1457 0.1664 REMARK 3 6 2.2889 - 2.1540 0.99 5475 303 0.1490 0.1551 REMARK 3 7 2.1540 - 2.0462 0.99 5442 308 0.1511 0.1591 REMARK 3 8 2.0462 - 1.9572 0.99 5477 304 0.1591 0.1669 REMARK 3 9 1.9572 - 1.8819 0.99 5457 280 0.1612 0.1686 REMARK 3 10 1.8819 - 1.8169 1.00 5562 260 0.1632 0.1847 REMARK 3 11 1.8169 - 1.7601 1.00 5469 287 0.1670 0.1674 REMARK 3 12 1.7601 - 1.7098 1.00 5511 287 0.1656 0.1829 REMARK 3 13 1.7098 - 1.6648 1.00 5482 296 0.1646 0.1786 REMARK 3 14 1.6648 - 1.6242 1.00 5495 293 0.1684 0.1957 REMARK 3 15 1.6242 - 1.5873 1.00 5501 267 0.1677 0.1670 REMARK 3 16 1.5873 - 1.5535 1.00 5488 280 0.1678 0.1938 REMARK 3 17 1.5535 - 1.5225 1.00 5484 282 0.1705 0.1917 REMARK 3 18 1.5225 - 1.4937 1.00 5477 297 0.1756 0.1859 REMARK 3 19 1.4937 - 1.4671 0.99 5376 307 0.1795 0.1827 REMARK 3 20 1.4671 - 1.4422 0.96 5238 298 0.1877 0.2133 REMARK 3 21 1.4422 - 1.4189 0.88 4812 258 0.1817 0.1971 REMARK 3 22 1.4189 - 1.3971 0.81 4461 221 0.1909 0.2025 REMARK 3 23 1.3971 - 1.3766 0.75 4073 228 0.1875 0.2261 REMARK 3 24 1.3766 - 1.3572 0.69 3763 203 0.1904 0.2074 REMARK 3 25 1.3572 - 1.3388 0.62 3446 181 0.1987 0.1878 REMARK 3 26 1.3388 - 1.3214 0.53 2915 145 0.1918 0.2042 REMARK 3 27 1.3214 - 1.3049 0.43 2335 123 0.1856 0.2073 REMARK 3 28 1.3049 - 1.2892 0.34 1841 111 0.1748 0.1821 REMARK 3 29 1.2892 - 1.2742 0.28 1533 79 0.1773 0.1933 REMARK 3 30 1.2742 - 1.2599 0.23 1269 72 0.1764 0.1754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4876 REMARK 3 ANGLE : 1.392 6695 REMARK 3 CHIRALITY : 0.077 766 REMARK 3 PLANARITY : 0.006 868 REMARK 3 DIHEDRAL : 13.942 1877 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 170606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 4RH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 21% PEG 800, 5% REMARK 280 GLYCEROL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.58100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.03550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.58100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.03550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.86100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.58100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.03550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.86100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.58100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.03550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 MET A 909 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 MET B 909 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 690 CB CG CD OE1 NE2 REMARK 480 ASN A 692 OD1 ND2 REMARK 480 ALA A 707 CB REMARK 480 GLN A 794 CG CD OE1 NE2 REMARK 480 ASP A 834 CG OD1 OD2 REMARK 480 GLN B 690 CG CD OE1 NE2 REMARK 480 ASN B 692 CG OD1 ND2 REMARK 480 GLN B 773 CG CD REMARK 480 GLU B 787 OE2 REMARK 480 GLN B 794 CG CD OE1 NE2 REMARK 480 ASN B 826 CA CB CG OD1 ND2 REMARK 480 ASP B 834 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 659 C - N - CA ANGL. DEV. = 22.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 663 -50.14 -125.13 REMARK 500 ASN A 692 -88.13 -72.06 REMARK 500 ALA A 707 18.60 55.04 REMARK 500 ALA A 808 48.67 -109.95 REMARK 500 CYS A 842 -129.86 -131.22 REMARK 500 ILE A 846 -41.39 -132.00 REMARK 500 VAL A 885 96.27 66.15 REMARK 500 THR B 663 -50.85 -125.08 REMARK 500 ILE B 705 79.48 -110.71 REMARK 500 ALA B 707 33.34 -71.49 REMARK 500 ALA B 708 -0.54 -158.96 REMARK 500 ALA B 808 51.70 -110.62 REMARK 500 CYS B 842 -128.44 -133.76 REMARK 500 ILE B 846 -43.15 -130.91 REMARK 500 VAL B 885 97.37 68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VN4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VN4 B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RHG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) D811E, C842S MUTANT IN COMPLEX REMARK 900 WITH EPS15 PTYR849 PEPTIDE REMARK 900 RELATED ID: 4RI4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) Y676I MUTANT IN COMPLEX WITH REMARK 900 VANADATE REMARK 900 RELATED ID: 4RH5 RELATED DB: PDB REMARK 900 RELATED ID: 4RH9 RELATED DB: PDB DBREF 4RI5 A 628 909 UNP P26045 PTN3_HUMAN 628 909 DBREF 4RI5 B 628 909 UNP P26045 PTN3_HUMAN 628 909 SEQADV 4RI5 MET A -23 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -22 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -21 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -20 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -19 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -18 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS A -17 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER A -16 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER A -15 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLY A -14 UNP P26045 EXPRESSION TAG SEQADV 4RI5 VAL A -13 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASP A -12 UNP P26045 EXPRESSION TAG SEQADV 4RI5 LEU A -11 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLY A -10 UNP P26045 EXPRESSION TAG SEQADV 4RI5 THR A -9 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLU A -8 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASN A -7 UNP P26045 EXPRESSION TAG SEQADV 4RI5 LEU A -6 UNP P26045 EXPRESSION TAG SEQADV 4RI5 TYR A -5 UNP P26045 EXPRESSION TAG SEQADV 4RI5 PHE A -4 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLN A -3 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER A -2 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASN A -1 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ALA A 0 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLU A 811 UNP P26045 ASP 811 ENGINEERED MUTATION SEQADV 4RI5 MET B -23 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -22 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -21 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -20 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -19 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -18 UNP P26045 EXPRESSION TAG SEQADV 4RI5 HIS B -17 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER B -16 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER B -15 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLY B -14 UNP P26045 EXPRESSION TAG SEQADV 4RI5 VAL B -13 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASP B -12 UNP P26045 EXPRESSION TAG SEQADV 4RI5 LEU B -11 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLY B -10 UNP P26045 EXPRESSION TAG SEQADV 4RI5 THR B -9 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLU B -8 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASN B -7 UNP P26045 EXPRESSION TAG SEQADV 4RI5 LEU B -6 UNP P26045 EXPRESSION TAG SEQADV 4RI5 TYR B -5 UNP P26045 EXPRESSION TAG SEQADV 4RI5 PHE B -4 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLN B -3 UNP P26045 EXPRESSION TAG SEQADV 4RI5 SER B -2 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ASN B -1 UNP P26045 EXPRESSION TAG SEQADV 4RI5 ALA B 0 UNP P26045 EXPRESSION TAG SEQADV 4RI5 GLU B 811 UNP P26045 ASP 811 ENGINEERED MUTATION SEQRES 1 A 306 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 306 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ASP THR SEQRES 3 A 306 LEU GLU GLY SER MET ALA GLN LEU LYS LYS GLY LEU GLU SEQRES 4 A 306 SER GLY THR VAL LEU ILE GLN PHE GLU GLN LEU TYR ARG SEQRES 5 A 306 LYS LYS PRO GLY LEU ALA ILE THR PHE ALA LYS LEU PRO SEQRES 6 A 306 GLN ASN LEU ASP LYS ASN ARG TYR LYS ASP VAL LEU PRO SEQRES 7 A 306 TYR ASP THR THR ARG VAL LEU LEU GLN GLY ASN GLU ASP SEQRES 8 A 306 TYR ILE ASN ALA SER TYR VAL ASN MET GLU ILE PRO ALA SEQRES 9 A 306 ALA ASN LEU VAL ASN LYS TYR ILE ALA THR GLN GLY PRO SEQRES 10 A 306 LEU PRO HIS THR CYS ALA GLN PHE TRP GLN VAL VAL TRP SEQRES 11 A 306 ASP GLN LYS LEU SER LEU ILE VAL MET LEU THR THR LEU SEQRES 12 A 306 THR GLU ARG GLY ARG THR LYS CYS HIS GLN TYR TRP PRO SEQRES 13 A 306 ASP PRO PRO ASP VAL MET ASN HIS GLY GLY PHE HIS ILE SEQRES 14 A 306 GLN CYS GLN SER GLU ASP CYS THR ILE ALA TYR VAL SER SEQRES 15 A 306 ARG GLU MET LEU VAL THR ASN THR GLN THR GLY GLU GLU SEQRES 16 A 306 HIS THR VAL THR HIS LEU GLN TYR VAL ALA TRP PRO GLU SEQRES 17 A 306 HIS GLY VAL PRO ASP ASP SER SER ASP PHE LEU GLU PHE SEQRES 18 A 306 VAL ASN TYR VAL ARG SER LEU ARG VAL ASP SER GLU PRO SEQRES 19 A 306 VAL LEU VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 20 A 306 VAL LEU VAL THR MET GLU THR ALA MET CYS LEU THR GLU SEQRES 21 A 306 ARG ASN LEU PRO ILE TYR PRO LEU ASP ILE VAL ARG LYS SEQRES 22 A 306 MET ARG ASP GLN ARG ALA MET MET VAL GLN THR SER SER SEQRES 23 A 306 GLN TYR LYS PHE VAL CYS GLU ALA ILE LEU ARG VAL TYR SEQRES 24 A 306 GLU GLU GLY LEU VAL GLN MET SEQRES 1 B 306 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 306 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ASP THR SEQRES 3 B 306 LEU GLU GLY SER MET ALA GLN LEU LYS LYS GLY LEU GLU SEQRES 4 B 306 SER GLY THR VAL LEU ILE GLN PHE GLU GLN LEU TYR ARG SEQRES 5 B 306 LYS LYS PRO GLY LEU ALA ILE THR PHE ALA LYS LEU PRO SEQRES 6 B 306 GLN ASN LEU ASP LYS ASN ARG TYR LYS ASP VAL LEU PRO SEQRES 7 B 306 TYR ASP THR THR ARG VAL LEU LEU GLN GLY ASN GLU ASP SEQRES 8 B 306 TYR ILE ASN ALA SER TYR VAL ASN MET GLU ILE PRO ALA SEQRES 9 B 306 ALA ASN LEU VAL ASN LYS TYR ILE ALA THR GLN GLY PRO SEQRES 10 B 306 LEU PRO HIS THR CYS ALA GLN PHE TRP GLN VAL VAL TRP SEQRES 11 B 306 ASP GLN LYS LEU SER LEU ILE VAL MET LEU THR THR LEU SEQRES 12 B 306 THR GLU ARG GLY ARG THR LYS CYS HIS GLN TYR TRP PRO SEQRES 13 B 306 ASP PRO PRO ASP VAL MET ASN HIS GLY GLY PHE HIS ILE SEQRES 14 B 306 GLN CYS GLN SER GLU ASP CYS THR ILE ALA TYR VAL SER SEQRES 15 B 306 ARG GLU MET LEU VAL THR ASN THR GLN THR GLY GLU GLU SEQRES 16 B 306 HIS THR VAL THR HIS LEU GLN TYR VAL ALA TRP PRO GLU SEQRES 17 B 306 HIS GLY VAL PRO ASP ASP SER SER ASP PHE LEU GLU PHE SEQRES 18 B 306 VAL ASN TYR VAL ARG SER LEU ARG VAL ASP SER GLU PRO SEQRES 19 B 306 VAL LEU VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 20 B 306 VAL LEU VAL THR MET GLU THR ALA MET CYS LEU THR GLU SEQRES 21 B 306 ARG ASN LEU PRO ILE TYR PRO LEU ASP ILE VAL ARG LYS SEQRES 22 B 306 MET ARG ASP GLN ARG ALA MET MET VAL GLN THR SER SER SEQRES 23 B 306 GLN TYR LYS PHE VAL CYS GLU ALA ILE LEU ARG VAL TYR SEQRES 24 B 306 GLU GLU GLY LEU VAL GLN MET HET GOL A1001 14 HET VN4 A1002 4 HET GOL B1001 14 HET VN4 B1002 4 HETNAM GOL GLYCEROL HETNAM VN4 OXIDO(DIOXO)VANADIUM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 VN4 2(O3 V 1-) FORMUL 7 HOH *757(H2 O) HELIX 1 1 THR A 629 GLY A 644 1 16 HELIX 2 2 GLY A 644 LEU A 653 1 10 HELIX 3 3 THR A 663 ASN A 674 5 12 HELIX 4 4 LEU A 721 HIS A 723 5 3 HELIX 5 5 THR A 724 GLN A 735 1 12 HELIX 6 6 ASP A 817 ARG A 832 1 16 HELIX 7 7 ILE A 846 ARG A 864 1 19 HELIX 8 8 TYR A 869 ASP A 879 1 11 HELIX 9 9 THR A 887 GLN A 908 1 22 HELIX 10 10 THR B 629 GLY B 644 1 16 HELIX 11 11 GLY B 644 LEU B 653 1 10 HELIX 12 12 THR B 663 ASN B 674 5 12 HELIX 13 13 PRO B 706 ASN B 709 5 4 HELIX 14 14 LEU B 721 HIS B 723 5 3 HELIX 15 15 THR B 724 GLN B 735 1 12 HELIX 16 16 ASP B 817 ARG B 832 1 16 HELIX 17 17 ILE B 846 ARG B 864 1 19 HELIX 18 18 TYR B 869 ASP B 879 1 11 HELIX 19 19 THR B 887 GLN B 908 1 22 SHEET 1 A 9 ARG A 686 LEU A 688 0 SHEET 2 A 9 TYR A 695 ILE A 705 -1 O ALA A 698 N VAL A 687 SHEET 3 A 9 LEU A 710 THR A 717 -1 O LEU A 710 N ILE A 705 SHEET 4 A 9 VAL A 838 HIS A 841 1 O VAL A 840 N ILE A 715 SHEET 5 A 9 LEU A 739 MET A 742 1 N VAL A 741 O LEU A 839 SHEET 6 A 9 GLU A 798 TYR A 806 1 O LEU A 804 N MET A 742 SHEET 7 A 9 TYR A 783 ASN A 792 -1 N MET A 788 O VAL A 801 SHEET 8 A 9 PHE A 770 CYS A 779 -1 N ASP A 778 O SER A 785 SHEET 9 A 9 VAL A 764 HIS A 767 -1 N MET A 765 O ILE A 772 SHEET 1 B 2 THR A 747 GLU A 748 0 SHEET 2 B 2 ARG A 751 THR A 752 -1 O ARG A 751 N GLU A 748 SHEET 1 C 9 ARG B 686 LEU B 688 0 SHEET 2 C 9 TYR B 695 ILE B 705 -1 O ALA B 698 N VAL B 687 SHEET 3 C 9 LEU B 710 THR B 717 -1 O LEU B 710 N ILE B 705 SHEET 4 C 9 VAL B 838 HIS B 841 1 O VAL B 840 N ILE B 715 SHEET 5 C 9 LEU B 739 MET B 742 1 N VAL B 741 O LEU B 839 SHEET 6 C 9 GLU B 798 TYR B 806 1 O LEU B 804 N MET B 742 SHEET 7 C 9 TYR B 783 ASN B 792 -1 N VAL B 790 O HIS B 799 SHEET 8 C 9 PHE B 770 CYS B 779 -1 N ASP B 778 O SER B 785 SHEET 9 C 9 VAL B 764 HIS B 767 -1 N MET B 765 O ILE B 772 SHEET 1 D 2 THR B 747 GLU B 748 0 SHEET 2 D 2 ARG B 751 THR B 752 -1 O ARG B 751 N GLU B 748 CISPEP 1 PRO A 761 PRO A 762 0 0.67 CISPEP 2 PRO B 761 PRO B 762 0 -1.79 SITE 1 AC1 6 HIS A 812 GLN A 886 HOH A1176 HOH A1260 SITE 2 AC1 6 HOH A1311 HOH A1374 SITE 1 AC2 10 CYS A 842 SER A 843 ALA A 844 GLY A 845 SITE 2 AC2 10 ILE A 846 GLY A 847 ARG A 848 GLN A 886 SITE 3 AC2 10 HOH A1176 HOH A1384 SITE 1 AC3 6 TYR B 676 HIS B 812 GLN B 886 HOH B1247 SITE 2 AC3 6 HOH B1255 HOH B1415 SITE 1 AC4 10 CYS B 842 SER B 843 ALA B 844 GLY B 845 SITE 2 AC4 10 ILE B 846 GLY B 847 ARG B 848 GLN B 886 SITE 3 AC4 10 HOH B1122 HOH B1415 CRYST1 95.162 96.071 141.722 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007056 0.00000