HEADER RNA 08-OCT-14 4RJ1 TITLE STRUCTURAL VARIATIONS AND SOLVENT STRUCTURE OF UGGGGU QUADRUPLEXES TITLE 2 STABILIZED BY SR2+ IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*UP*GP*GP*GP*GP*U)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RNA UGGGGU QUADRUPLEXES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA QUADRUPLEXES, PARALLEL-STRANDED, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.C.FYFE,P.W.DUNTEN,W.G.SCOTT REVDAT 3 28-FEB-24 4RJ1 1 LINK REVDAT 2 24-JUN-15 4RJ1 1 JRNL REVDAT 1 12-NOV-14 4RJ1 0 JRNL AUTH A.C.FYFE,P.W.DUNTEN,M.M.MARTICK,W.G.SCOTT JRNL TITL STRUCTURAL VARIATIONS AND SOLVENT STRUCTURE OF R(UGGGGU) JRNL TITL 2 QUADRUPLEXES STABILIZED BY SR(2+) IONS. JRNL REF J.MOL.BIOL. V. 427 2205 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 25861762 JRNL DOI 10.1016/J.JMB.2015.03.022 REMARK 2 REMARK 2 RESOLUTION. 0.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 15579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.093 REMARK 3 R VALUE (WORKING SET) : 0.091 REMARK 3 FREE R VALUE : 0.109 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 258 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.016 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.008 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 288 ; 0.011 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 110 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 448 ; 1.568 ; 1.233 REMARK 3 BOND ANGLES OTHERS (DEGREES): 267 ; 1.799 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 48 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 132 ; 0.047 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 44 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 287 ; 0.885 ; 0.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 286 ; 0.875 ; 0.808 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 449 ; 1.275 ; 1.112 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 550 ; 3.227 ;17.424 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 504 ; 2.247 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 287 ; 6.947 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 8 ;22.257 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 328 ; 8.099 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17321 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.920 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2 20 MM, SRCL2 80 MM, CACL2 40MM, REMARK 280 SPM 4CL 12MM, SODIUM CACODYLATE 20MM, 35% MPD , PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.30900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.30900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.30900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.30900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.30900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.30900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.30900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.30900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 36.61800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 18.30900 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -18.30900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 18.30900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 18.30900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SR SR A9001 LIES ON A SPECIAL POSITION. REMARK 375 SR SR A9002 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A9003 LIES ON A SPECIAL POSITION. REMARK 375 SR SR B2101 LIES ON A SPECIAL POSITION. REMARK 375 SR SR B2102 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B2103 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A1002 0.07 SIDE CHAIN REMARK 500 G A1003 0.05 SIDE CHAIN REMARK 500 G A1004 0.06 SIDE CHAIN REMARK 500 G B2002 0.06 SIDE CHAIN REMARK 500 G B2003 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A9002 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1002 O6 REMARK 620 2 G A1003 O6 68.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A9001 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1004 O6 REMARK 620 2 G A1005 O6 68.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A9004 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A1006 O3' REMARK 620 2 U A1006 O2' 59.9 REMARK 620 3 HOH A9102 O 100.7 75.7 REMARK 620 4 HOH A9108 O 129.2 69.7 71.3 REMARK 620 5 HOH A9110 O 96.2 82.0 139.9 69.8 REMARK 620 6 HOH A9111 O 155.2 142.8 81.8 75.2 97.4 REMARK 620 7 HOH A9112 O 76.3 119.8 74.2 140.2 145.6 80.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2106 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A9103 O REMARK 620 2 U B2001 O4 74.4 REMARK 620 3 HOH B2230 O 99.4 77.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B2101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2002 O6 REMARK 620 2 G B2003 O6 69.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2002 O3' REMARK 620 2 G B2003 OP1 49.8 REMARK 620 3 HOH B2209 O 63.6 103.9 REMARK 620 4 HOH B2214 O 138.9 170.8 84.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2002 OP2 REMARK 620 2 HOH B2206 O 89.7 REMARK 620 3 HOH B2213 O 167.6 90.7 REMARK 620 4 HOH B2227 O 91.2 169.7 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B2102 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2004 O6 REMARK 620 2 G B2005 O6 69.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J8G RELATED DB: PDB DBREF 4RJ1 A 1001 1006 PDB 4RJ1 4RJ1 1001 1006 DBREF 4RJ1 B 2001 2006 PDB 4RJ1 4RJ1 2001 2006 SEQRES 1 A 6 U G G G G U SEQRES 1 B 6 U G G G G U HET SR A9001 1 HET SR A9002 1 HET NA A9003 2 HET SR A9004 1 HET SR B2101 1 HET SR B2102 1 HET NA B2103 2 HET CA B2104 1 HET CA B2105 1 HET CA B2106 1 HETNAM SR STRONTIUM ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 3 SR 5(SR 2+) FORMUL 5 NA 2(NA 1+) FORMUL 10 CA 3(CA 2+) FORMUL 13 HOH *66(H2 O) LINK O6 G A1002 SR SR A9002 1555 1555 2.61 LINK O6 G A1003 SR SR A9002 1555 1555 2.62 LINK O6 G A1004 SR SR A9001 1555 1555 2.62 LINK O6 G A1005 SR SR A9001 1555 1555 2.61 LINK O4 U A1006 NA B NA A9003 1555 1555 2.41 LINK O3' U A1006 SR SR A9004 1555 1555 2.57 LINK O2' U A1006 SR SR A9004 1555 1555 2.73 LINK NA A NA A9003 O4 U B2006 1555 1555 2.88 LINK SR SR A9004 O HOH A9102 1555 1555 2.52 LINK SR SR A9004 O HOH A9108 1555 1555 2.62 LINK SR SR A9004 O HOH A9110 1555 1555 2.51 LINK SR SR A9004 O HOH A9111 1555 1555 2.49 LINK SR SR A9004 O HOH A9112 1555 1555 2.52 LINK O HOH A9103 CA A CA B2106 1555 1555 2.49 LINK O4 U B2001 CA A CA B2106 1555 1555 2.48 LINK O6 G B2002 SR SR B2101 1555 1555 2.59 LINK O3' G B2002 CA A CA B2104 1555 1555 3.11 LINK OP2 G B2002 CA A CA B2105 1555 1555 2.34 LINK O6 G B2003 SR SR B2101 1555 1555 2.60 LINK OP1 G B2003 CA A CA B2104 1555 1555 2.47 LINK O6 G B2004 SR SR B2102 1555 1555 2.61 LINK O6 G B2005 SR SR B2102 1555 1555 2.61 LINK NA B NA B2103 O BHOH B2232 1555 1555 3.07 LINK CA A CA B2104 O HOH B2209 1555 1555 2.48 LINK CA A CA B2104 O HOH B2214 1555 1555 2.63 LINK CA A CA B2105 O HOH B2206 1555 1555 2.38 LINK CA A CA B2105 O HOH B2213 1555 1555 2.35 LINK CA A CA B2105 O HOH B2227 1555 1555 2.37 LINK CA A CA B2106 O HOH B2230 1555 1555 2.62 CRYST1 36.618 36.618 37.382 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026751 0.00000