HEADER TRANSCRIPTION REGULATOR 11-OCT-14 4RK6 TITLE CRYSTAL STRUCTURE OF LACI FAMILY TRANSCRIPTIONAL REGULATOR CCPA FROM TITLE 2 WEISSELLA PARAMESENTEROIDES, TARGET EFI-512926, WITH BOUND GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-RESISTANCE AMYLASE REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 53-337; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEISSELLA PARAMESENTEROIDES ATCC 33313; SOURCE 3 ORGANISM_TAXID: 585506; SOURCE 4 GENE: CCPA, HMPREF0877_1426; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SUGAR BINDING, TRANSCRIPTION REGULATION, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSCRIPTIONAL FACTOR, D-GLUCOSE, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA,J.D.ATTONITO, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL,B.HILLERICH,J.LOVE, AUTHOR 3 K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 29-JUL-20 4RK6 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 29-OCT-14 4RK6 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA, JRNL AUTH 2 A.SCOTT GLENN,J.D.ATTONITO,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL, JRNL AUTH 3 B.HILLERICH,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR CCPA FROM JRNL TITL 2 WEISSELLA PARAMESENTEROIDES, TARGET EFI-512926 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 64875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4365 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4160 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5944 ; 1.344 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9590 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 5.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.062 ;25.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 709 ;12.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4878 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2168 ; 7.562 ; 5.024 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2167 ; 7.492 ; 5.018 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2707 ; 8.242 ; 7.827 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2708 ; 8.271 ; 7.834 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2197 ;15.891 ; 6.439 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2197 ;15.891 ; 6.440 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3230 ;16.112 ; 9.459 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5091 ;16.166 ;23.285 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4881 ;16.338 ;22.985 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 300 6 REMARK 3 1 B 0 B 300 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 4090 ; 0.440 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 4090 ; 4.780 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 33.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 10 MM BIS-TRIS, 500 MM REMARK 280 SODIUM CHLORIDE, 10% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100 REMARK 280 RATIO), RESERVOIR: 0.641 M MALONIC ACID, 0.088 M AMMONIUM REMARK 280 CITRATE TRIBASIC, 0.042 M SUCCINIC ACID, 0.105 M DL-MALIC ACID, REMARK 280 0.14 M SODIUM ACETATE, 0.175 M SODIUM FORMATE, 0.056 M AMMONIUM REMARK 280 TARTRATE DIBASIC, CRYOPROTECTANT = RESERVOIR + 100 MM GLUCOSE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.02750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.28200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.04125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.28200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.01375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.28200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.28200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.04125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.28200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.28200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.01375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.02750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 51 REMARK 465 MSE A 52 REMARK 465 ALA A 53 REMARK 465 ASP A 54 REMARK 465 LEU A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 LYS A 58 REMARK 465 ARG A 59 REMARK 465 SER A 60 REMARK 465 SER A 310 REMARK 465 GLU A 311 REMARK 465 LYS A 312 REMARK 465 THR A 313 REMARK 465 SER A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 SER B 51 REMARK 465 MSE B 52 REMARK 465 ALA B 53 REMARK 465 ASP B 54 REMARK 465 LEU B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 LYS B 58 REMARK 465 ARG B 59 REMARK 465 SER B 60 REMARK 465 ASP B 309 REMARK 465 SER B 310 REMARK 465 GLU B 311 REMARK 465 LYS B 312 REMARK 465 THR B 313 REMARK 465 GLU B 314 REMARK 465 THR B 336 REMARK 465 LYS B 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 73 6.53 -67.73 REMARK 500 ASP A 99 -168.07 -100.09 REMARK 500 GLN A 237 58.23 -143.57 REMARK 500 LEU A 269 121.95 -175.09 REMARK 500 ASP A 275 -52.54 138.42 REMARK 500 ARG A 327 -122.13 -123.51 REMARK 500 LEU B 125 -20.27 95.37 REMARK 500 GLN B 237 55.66 -144.32 REMARK 500 LEU B 269 127.31 -178.03 REMARK 500 ASP B 275 -51.50 135.58 REMARK 500 ARG B 327 -121.92 -121.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RK7 RELATED DB: PDB REMARK 900 LACI FAMILY TRANSCRIPTIONAL REGULATOR CCPA FROM WEISSELLA REMARK 900 PARAMESENTEROIDES WITH BOUND SUCROSE REMARK 900 RELATED ID: EFI-512926 RELATED DB: TARGETTRACK DBREF 4RK6 A 53 337 UNP C5RBT0 C5RBT0_WEIPA 53 337 DBREF 4RK6 B 53 337 UNP C5RBT0 C5RBT0_WEIPA 53 337 SEQADV 4RK6 SER A 51 UNP C5RBT0 EXPRESSION TAG SEQADV 4RK6 MSE A 52 UNP C5RBT0 EXPRESSION TAG SEQADV 4RK6 SER B 51 UNP C5RBT0 EXPRESSION TAG SEQADV 4RK6 MSE B 52 UNP C5RBT0 EXPRESSION TAG SEQRES 1 A 287 SER MSE ALA ASP LEU SER SER LYS ARG SER ARG VAL VAL SEQRES 2 A 287 GLY VAL VAL VAL PRO LEU ILE HIS THR ASN PHE ALA ASP SEQRES 3 A 287 GLU ILE ILE LYS GLY LEU TYR GLU THR THR ILE SER SER SEQRES 4 A 287 GLY TYR GLU LEU LEU ILE THR TYR LEU ASP GLU ASP GLU SEQRES 5 A 287 ASP HIS GLN TYR GLN VAL PHE GLN THR LEU LEU SER ARG SEQRES 6 A 287 GLN VAL GLY ALA VAL PHE MSE LEU SER LEU ASP ILE PRO SEQRES 7 A 287 SER TRP MSE ILE ASP LYS LEU LEU GLU GLU GLN ILE SER SEQRES 8 A 287 VAL ILE SER LEU THR ALA LEU LEU SER GLU GLN ILE SER SEQRES 9 A 287 ALA VAL THR SER ASN GLU PHE GLU MSE MSE ASN SER ILE SEQRES 10 A 287 VAL ASP TYR LEU ILE ASP MSE GLY HIS LYS ASN ILE ALA SEQRES 11 A 287 LEU VAL GLY ASP THR LYS LEU THR THR ASN ILE SER SER SEQRES 12 A 287 THR ARG ARG THR ASN PHE ILE LYS SER MSE THR ASP HIS SEQRES 13 A 287 ASN LEU ALA TYR GLU ASN ILE PHE LEU TYR GLY ASN ASP SEQRES 14 A 287 HIS SER TYR GLU THR GLY TYR THR SER VAL THR THR GLY SEQRES 15 A 287 TYR ASP ILE ASN GLN LEU PRO PHE THR ALA ALA ILE ALA SEQRES 16 A 287 THR ALA ASP MSE VAL GLY GLN GLY LEU ILE ASN ALA MSE SEQRES 17 A 287 SER ASP HIS GLY LYS THR VAL PRO GLU ASP LEU SER ILE SEQRES 18 A 287 VAL THR ILE ASP GLY LEU GLN GLN THR GLU ILE ALA ARG SEQRES 19 A 287 PRO LYS LEU THR THR VAL LYS GLN ASP PHE PRO GLU ILE SEQRES 20 A 287 GLY ARG ILE ALA MSE GLN LEU PHE LEU ASP SER ASP SER SEQRES 21 A 287 GLU LYS THR GLU PRO GLN ILE ILE TYR ILE PRO THR GLU SEQRES 22 A 287 LEU ILE GLN ARG ASP SER VAL LEU ASN LEU ASN SER THR SEQRES 23 A 287 LYS SEQRES 1 B 287 SER MSE ALA ASP LEU SER SER LYS ARG SER ARG VAL VAL SEQRES 2 B 287 GLY VAL VAL VAL PRO LEU ILE HIS THR ASN PHE ALA ASP SEQRES 3 B 287 GLU ILE ILE LYS GLY LEU TYR GLU THR THR ILE SER SER SEQRES 4 B 287 GLY TYR GLU LEU LEU ILE THR TYR LEU ASP GLU ASP GLU SEQRES 5 B 287 ASP HIS GLN TYR GLN VAL PHE GLN THR LEU LEU SER ARG SEQRES 6 B 287 GLN VAL GLY ALA VAL PHE MSE LEU SER LEU ASP ILE PRO SEQRES 7 B 287 SER TRP MSE ILE ASP LYS LEU LEU GLU GLU GLN ILE SER SEQRES 8 B 287 VAL ILE SER LEU THR ALA LEU LEU SER GLU GLN ILE SER SEQRES 9 B 287 ALA VAL THR SER ASN GLU PHE GLU MSE MSE ASN SER ILE SEQRES 10 B 287 VAL ASP TYR LEU ILE ASP MSE GLY HIS LYS ASN ILE ALA SEQRES 11 B 287 LEU VAL GLY ASP THR LYS LEU THR THR ASN ILE SER SER SEQRES 12 B 287 THR ARG ARG THR ASN PHE ILE LYS SER MSE THR ASP HIS SEQRES 13 B 287 ASN LEU ALA TYR GLU ASN ILE PHE LEU TYR GLY ASN ASP SEQRES 14 B 287 HIS SER TYR GLU THR GLY TYR THR SER VAL THR THR GLY SEQRES 15 B 287 TYR ASP ILE ASN GLN LEU PRO PHE THR ALA ALA ILE ALA SEQRES 16 B 287 THR ALA ASP MSE VAL GLY GLN GLY LEU ILE ASN ALA MSE SEQRES 17 B 287 SER ASP HIS GLY LYS THR VAL PRO GLU ASP LEU SER ILE SEQRES 18 B 287 VAL THR ILE ASP GLY LEU GLN GLN THR GLU ILE ALA ARG SEQRES 19 B 287 PRO LYS LEU THR THR VAL LYS GLN ASP PHE PRO GLU ILE SEQRES 20 B 287 GLY ARG ILE ALA MSE GLN LEU PHE LEU ASP SER ASP SER SEQRES 21 B 287 GLU LYS THR GLU PRO GLN ILE ILE TYR ILE PRO THR GLU SEQRES 22 B 287 LEU ILE GLN ARG ASP SER VAL LEU ASN LEU ASN SER THR SEQRES 23 B 287 LYS MODRES 4RK6 MSE A 122 MET SELENOMETHIONINE MODRES 4RK6 MSE A 131 MET SELENOMETHIONINE MODRES 4RK6 MSE A 163 MET SELENOMETHIONINE MODRES 4RK6 MSE A 164 MET SELENOMETHIONINE MODRES 4RK6 MSE A 174 MET SELENOMETHIONINE MODRES 4RK6 MSE A 203 MET SELENOMETHIONINE MODRES 4RK6 MSE A 249 MET SELENOMETHIONINE MODRES 4RK6 MSE A 258 MET SELENOMETHIONINE MODRES 4RK6 MSE A 302 MET SELENOMETHIONINE MODRES 4RK6 MSE B 122 MET SELENOMETHIONINE MODRES 4RK6 MSE B 131 MET SELENOMETHIONINE MODRES 4RK6 MSE B 163 MET SELENOMETHIONINE MODRES 4RK6 MSE B 164 MET SELENOMETHIONINE MODRES 4RK6 MSE B 174 MET SELENOMETHIONINE MODRES 4RK6 MSE B 203 MET SELENOMETHIONINE MODRES 4RK6 MSE B 249 MET SELENOMETHIONINE MODRES 4RK6 MSE B 258 MET SELENOMETHIONINE MODRES 4RK6 MSE B 302 MET SELENOMETHIONINE HET MSE A 122 13 HET MSE A 131 8 HET MSE A 163 8 HET MSE A 164 8 HET MSE A 174 8 HET MSE A 203 8 HET MSE A 249 8 HET MSE A 258 8 HET MSE A 302 8 HET MSE B 122 13 HET MSE B 131 8 HET MSE B 163 8 HET MSE B 164 8 HET MSE B 174 8 HET MSE B 203 8 HET MSE B 249 8 HET MSE B 258 8 HET MSE B 302 8 HET GLC A 401 12 HET GLC B 401 12 HETNAM MSE SELENOMETHIONINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 GLC 2(C6 H12 O6) FORMUL 5 HOH *429(H2 O) HELIX 1 1 ASN A 73 SER A 89 1 17 HELIX 2 2 ASP A 101 ARG A 115 1 15 HELIX 3 3 PRO A 128 GLU A 138 1 11 HELIX 4 4 ASN A 159 MSE A 174 1 16 HELIX 5 5 SER A 193 HIS A 206 1 14 HELIX 6 6 ALA A 209 GLU A 211 5 3 HELIX 7 7 SER A 221 VAL A 229 1 9 HELIX 8 8 ALA A 247 HIS A 261 1 15 HELIX 9 9 GLN A 278 ALA A 283 1 6 HELIX 10 10 ASP A 293 SER A 308 1 16 HELIX 11 11 ASN B 73 SER B 89 1 17 HELIX 12 12 ASP B 101 ARG B 115 1 15 HELIX 13 13 PRO B 128 GLU B 138 1 11 HELIX 14 14 ASN B 159 MSE B 174 1 16 HELIX 15 15 SER B 193 HIS B 206 1 14 HELIX 16 16 ALA B 209 GLU B 211 5 3 HELIX 17 17 SER B 221 VAL B 229 1 9 HELIX 18 18 ALA B 247 HIS B 261 1 15 HELIX 19 19 GLN B 278 ALA B 283 1 6 HELIX 20 20 ASP B 293 SER B 308 1 16 SHEET 1 A 6 GLU A 92 LEU A 98 0 SHEET 2 A 6 VAL A 62 PRO A 68 1 N VAL A 63 O LEU A 94 SHEET 3 A 6 ALA A 119 MSE A 122 1 O ALA A 119 N GLY A 64 SHEET 4 A 6 SER A 141 LEU A 145 1 O LEU A 145 N MSE A 122 SHEET 5 A 6 SER A 154 SER A 158 1 O VAL A 156 N SER A 144 SHEET 6 A 6 ILE A 317 ILE A 320 1 O ILE A 318 N ALA A 155 SHEET 1 B 6 ILE A 213 TYR A 216 0 SHEET 2 B 6 ILE A 179 VAL A 182 1 N LEU A 181 O PHE A 214 SHEET 3 B 6 ALA A 242 ALA A 245 1 O ILE A 244 N ALA A 180 SHEET 4 B 6 SER A 270 ASP A 275 1 O VAL A 272 N ALA A 245 SHEET 5 B 6 THR A 288 LYS A 291 1 O VAL A 290 N ASP A 275 SHEET 6 B 6 GLU A 323 ILE A 325 -1 O ILE A 325 N THR A 289 SHEET 1 C 6 GLU B 92 LEU B 98 0 SHEET 2 C 6 VAL B 62 PRO B 68 1 N VAL B 63 O LEU B 94 SHEET 3 C 6 ALA B 119 MSE B 122 1 O PHE B 121 N GLY B 64 SHEET 4 C 6 SER B 141 LEU B 145 1 O LEU B 145 N MSE B 122 SHEET 5 C 6 SER B 154 SER B 158 1 O SER B 154 N SER B 144 SHEET 6 C 6 ILE B 317 ILE B 320 1 O ILE B 318 N ALA B 155 SHEET 1 D 6 ILE B 213 TYR B 216 0 SHEET 2 D 6 ILE B 179 VAL B 182 1 N LEU B 181 O PHE B 214 SHEET 3 D 6 ALA B 242 ALA B 245 1 O ILE B 244 N ALA B 180 SHEET 4 D 6 SER B 270 ASP B 275 1 O VAL B 272 N ALA B 245 SHEET 5 D 6 THR B 288 LYS B 291 1 O VAL B 290 N ASP B 275 SHEET 6 D 6 GLU B 323 ILE B 325 -1 O ILE B 325 N THR B 289 LINK C PHE A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N LEU A 123 1555 1555 1.34 LINK C TRP A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ILE A 132 1555 1555 1.33 LINK C GLU A 162 N MSE A 163 1555 1555 1.34 LINK C MSE A 163 N MSE A 164 1555 1555 1.33 LINK C MSE A 164 N ASN A 165 1555 1555 1.32 LINK C ASP A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N GLY A 175 1555 1555 1.34 LINK C SER A 202 N MSE A 203 1555 1555 1.32 LINK C MSE A 203 N THR A 204 1555 1555 1.33 LINK C ASP A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N VAL A 250 1555 1555 1.34 LINK C ALA A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N SER A 259 1555 1555 1.34 LINK C ALA A 301 N MSE A 302 1555 1555 1.32 LINK C MSE A 302 N GLN A 303 1555 1555 1.32 LINK C PHE B 121 N MSE B 122 1555 1555 1.33 LINK C MSE B 122 N LEU B 123 1555 1555 1.33 LINK C TRP B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N ILE B 132 1555 1555 1.33 LINK C GLU B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N MSE B 164 1555 1555 1.33 LINK C MSE B 164 N ASN B 165 1555 1555 1.32 LINK C ASP B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N GLY B 175 1555 1555 1.34 LINK C SER B 202 N MSE B 203 1555 1555 1.34 LINK C MSE B 203 N THR B 204 1555 1555 1.32 LINK C ASP B 248 N MSE B 249 1555 1555 1.33 LINK C MSE B 249 N VAL B 250 1555 1555 1.34 LINK C ALA B 257 N MSE B 258 1555 1555 1.33 LINK C MSE B 258 N SER B 259 1555 1555 1.32 LINK C ALA B 301 N MSE B 302 1555 1555 1.33 LINK C MSE B 302 N GLN B 303 1555 1555 1.32 CISPEP 1 VAL A 265 PRO A 266 0 8.29 CISPEP 2 ARG A 284 PRO A 285 0 5.16 CISPEP 3 VAL B 265 PRO B 266 0 7.21 CISPEP 4 ARG B 284 PRO B 285 0 0.85 CRYST1 102.564 102.564 128.055 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007809 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.999988 -0.000080 0.004936 83.83878 1 MTRIX2 2 0.000840 0.982527 0.186119 -2.81809 1 MTRIX3 2 -0.004865 0.186121 -0.982515 27.00982 1