HEADER TRANSFERASE 12-OCT-14 4RKC TITLE PSYCHROPHILIC AROMATIC AMINO ACIDS AMINOTRANSFERASE FROM PSYCHROBACTER TITLE 2 SP. B6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC AMINO ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.57; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROBACTER SP. B6; SOURCE 3 ORGANISM_TAXID: 408968; SOURCE 4 STRAIN: B6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: P11 KEYWDS AMINOTRANSFERASE, AROMATIC SUBSTRATES, PLP DEPENDENT ENZYME, PLP, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BUJACZ,M.RUTKIEWICZ-KROTEWICZ,G.BUJACZ,K.NOWAKOWSKA-SAPOTA, AUTHOR 2 M.TURKIEWICZ REVDAT 4 20-SEP-23 4RKC 1 COMPND REMARK LINK REVDAT 3 10-OCT-18 4RKC 1 COMPND JRNL REMARK REVDAT 2 18-MAR-15 4RKC 1 JRNL REVDAT 1 11-MAR-15 4RKC 0 JRNL AUTH A.BUJACZ,M.RUTKIEWICZ-KROTEWICZ,K.NOWAKOWSKA-SAPOTA, JRNL AUTH 2 M.TURKIEWICZ JRNL TITL CRYSTAL STRUCTURE AND ENZYMATIC PROPERTIES OF A BROAD JRNL TITL 2 SUBSTRATE-SPECIFICITY PSYCHROPHILIC AMINOTRANSFERASE FROM JRNL TITL 3 THE ANTARCTIC SOIL BACTERIUM PSYCHROBACTER SP. B6. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 632 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 25760611 JRNL DOI 10.1107/S1399004714028016 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2636 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 771 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.554 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6462 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8746 ; 2.048 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 808 ; 6.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;37.550 ;24.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1072 ;15.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 947 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4976 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3199 ; 1.978 ; 1.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4000 ; 2.960 ; 2.964 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3263 ; 2.833 ; 2.197 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11846 ; 6.783 ;17.938 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9452 37.6862 56.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.0336 REMARK 3 T33: 0.0501 T12: -0.0203 REMARK 3 T13: -0.0034 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1185 L22: 0.1411 REMARK 3 L33: 0.1908 L12: 0.0062 REMARK 3 L13: 0.1328 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.0528 S13: 0.0118 REMARK 3 S21: 0.0175 S22: 0.0043 S23: 0.0105 REMARK 3 S31: -0.0781 S32: 0.0537 S33: 0.0603 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4886 23.6451 75.3729 REMARK 3 T TENSOR REMARK 3 T11: 0.0099 T22: 0.0084 REMARK 3 T33: 0.0108 T12: 0.0038 REMARK 3 T13: 0.0071 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.3207 L22: 0.2303 REMARK 3 L33: 0.4181 L12: 0.1132 REMARK 3 L13: -0.0222 L23: 0.1099 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0321 S13: -0.0156 REMARK 3 S21: 0.0136 S22: -0.0090 S23: -0.0099 REMARK 3 S31: -0.0009 S32: 0.0304 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 288 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8043 41.7246 64.0242 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0112 REMARK 3 T33: 0.0167 T12: -0.0208 REMARK 3 T13: -0.0162 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5895 L22: 1.0419 REMARK 3 L33: 1.0549 L12: 0.4789 REMARK 3 L13: 0.3140 L23: 0.2774 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.0205 S13: 0.0394 REMARK 3 S21: 0.0155 S22: -0.0220 S23: -0.0531 REMARK 3 S31: -0.2252 S32: 0.0861 S33: 0.0566 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8781 14.0249 53.7894 REMARK 3 T TENSOR REMARK 3 T11: 0.0131 T22: 0.0276 REMARK 3 T33: 0.0120 T12: 0.0120 REMARK 3 T13: -0.0027 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.3453 L22: 0.1080 REMARK 3 L33: 0.0929 L12: 0.0271 REMARK 3 L13: 0.1225 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0814 S13: -0.0624 REMARK 3 S21: 0.0191 S22: -0.0039 S23: 0.0013 REMARK 3 S31: 0.0052 S32: 0.0425 S33: -0.0250 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 287 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5404 31.5560 60.8556 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0329 REMARK 3 T33: 0.0138 T12: 0.0232 REMARK 3 T13: -0.0062 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5433 L22: 0.1455 REMARK 3 L33: 0.2055 L12: 0.0910 REMARK 3 L13: -0.0615 L23: 0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0076 S13: 0.0073 REMARK 3 S21: -0.0109 S22: -0.0489 S23: 0.0179 REMARK 3 S31: -0.0546 S32: -0.0617 S33: 0.0391 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 288 B 398 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7692 11.2068 47.2993 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0328 REMARK 3 T33: 0.0222 T12: 0.0158 REMARK 3 T13: -0.0039 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.4908 L22: 0.7616 REMARK 3 L33: 0.2089 L12: 0.2826 REMARK 3 L13: -0.0262 L23: -0.1413 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0540 S13: -0.0275 REMARK 3 S21: -0.0177 S22: 0.0166 S23: 0.0861 REMARK 3 S31: 0.0170 S32: -0.0018 S33: -0.0026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8020 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 16.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FSL AND 3QN6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG(NO3)2, 20% PEG3350, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.05300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 63 63.31 -118.92 REMARK 500 TYR A 149 -82.27 -128.44 REMARK 500 ARG A 254 67.75 64.59 REMARK 500 ILE A 282 -62.82 -106.15 REMARK 500 SER A 284 -53.17 73.33 REMARK 500 PHE A 365 -12.90 -140.80 REMARK 500 SER A 373 -0.31 85.19 REMARK 500 ASP B 86 28.01 48.81 REMARK 500 TYR B 149 -67.58 -140.38 REMARK 500 ASP B 172 -1.79 79.28 REMARK 500 ARG B 254 74.53 63.54 REMARK 500 SER B 284 -50.71 71.95 REMARK 500 SER B 373 0.68 86.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 770 O REMARK 620 2 HOH A 779 O 89.2 REMARK 620 3 HOH A 780 O 90.2 87.3 REMARK 620 4 HOH A 781 O 87.0 175.4 95.4 REMARK 620 5 HOH A 782 O 165.3 93.9 75.6 90.4 REMARK 620 6 HOH A 869 O 98.4 97.8 170.0 80.2 95.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 526 O REMARK 620 2 HOH A 527 O 85.5 REMARK 620 3 HOH B 542 O 91.1 166.4 REMARK 620 4 HOH B 543 O 176.0 92.0 92.1 REMARK 620 5 HOH B 544 O 91.4 81.1 85.8 91.3 REMARK 620 6 HOH B 592 O 93.9 96.2 97.2 83.3 173.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TAT RELATED DB: PDB REMARK 900 AROMATIC AMINO ACIDS AMINOTRANSFERASE FROM E. COLI REMARK 900 RELATED ID: 3FSL RELATED DB: PDB REMARK 900 AROMATIC AMINO ACIDS AMINOTRANSFERASE FROM E.COLI - MUTANT REMARK 900 RELATED ID: 4F4E RELATED DB: PDB REMARK 900 AROMATIC AMINO ACIDS AMINOTRANSFERASE FROM BURKHOLDERIA PSEUDOMALLEI REMARK 900 RELATED ID: 4RKD RELATED DB: PDB DBREF 4RKC A 1 398 UNP C7E5X4 C7E5X4_9GAMM 1 398 DBREF 4RKC B 1 398 UNP C7E5X4 C7E5X4_9GAMM 1 398 SEQRES 1 A 398 MET PHE GLU ARG ILE ASP TYR TYR ALA GLY ASP PRO ILE SEQRES 2 A 398 LEU GLY LEU VAL GLU LYS PHE ALA ALA ASP ASN ASN PRO SEQRES 3 A 398 ASP LYS VAL ASN LEU GLY ILE GLY ILE TYR TYR ASP GLU SEQRES 4 A 398 SER GLY VAL MET PRO VAL LEU ASP CYS VAL LYS ILE ALA SEQRES 5 A 398 GLU GLN ARG ILE ALA ASP PRO ILE SER PRO ARG PRO TYR SEQRES 6 A 398 LEU PRO MET ALA GLY LEU PRO GLY HIS ARG LYS GLY CYS SEQRES 7 A 398 GLN GLU LEU LEU PHE GLY LYS ASP ALA PRO VAL LEU LYS SEQRES 8 A 398 ASP GLY LEU VAL ALA THR ILE ALA THR ILE GLY GLY SER SEQRES 9 A 398 GLY ALA LEU LYS VAL GLY ALA GLU PHE ILE HIS GLU TRP SEQRES 10 A 398 PHE PRO GLN SER LYS CYS TYR VAL SER ASP PRO THR TRP SEQRES 11 A 398 GLY ASN HIS ILE ALA ILE PHE GLU GLY CYS ASP ILE GLU SEQRES 12 A 398 VAL GLY LYS TYR PRO TYR TYR ASP THR ALA THR GLY GLY SEQRES 13 A 398 ILE LYS PHE ASP GLU MET ILE ALA PHE PHE GLU THR LEU SEQRES 14 A 398 ASN LYS ASP ASP VAL LEU LEU LEU HIS PRO CYS CYS HIS SEQRES 15 A 398 ASN PRO THR GLY VAL ASP LEU THR ARG GLU GLN TRP ASP SEQRES 16 A 398 THR VAL LEU ASN VAL ILE GLN GLU ARG GLU LEU ILE PRO SEQRES 17 A 398 PHE MET ASP ILE ALA TYR GLN GLY PHE GLY GLU ASP MET SEQRES 18 A 398 ASP SER ASP ALA TYR ALA ILE ARG LYS ALA VAL ASP MET SEQRES 19 A 398 GLY LEU PRO LEU PHE VAL SER ASN SER PHE SER LYS ASN SEQRES 20 A 398 LEU SER LEU TYR GLY GLU ARG VAL GLY GLY LEU SER VAL SEQRES 21 A 398 VAL CYS PRO THR VAL ASP GLU THR GLU ARG VAL PHE GLY SEQRES 22 A 398 GLN LEU ASN SER THR VAL ARG ARG ILE TYR SER SER PRO SEQRES 23 A 398 PRO SER HIS GLY GLY ARG VAL VAL ASP ILE VAL MET ASN SEQRES 24 A 398 ASP ALA ALA LEU HIS GLU GLN TRP VAL GLY GLU VAL TYR SEQRES 25 A 398 ALA MET ARG ASP ARG ILE LYS SER MET ARG THR LYS LEU SEQRES 26 A 398 LYS SER VAL LEU GLU ALA LYS ILE SER GLY ARG ASN PHE SEQRES 27 A 398 ASP TYR LEU THR ALA GLN ASN GLY MET PHE SER PHE THR SEQRES 28 A 398 GLY LEU THR PRO GLU GLN VAL GLU ARG LEU GLN SER GLU SEQRES 29 A 398 PHE GLY ILE TYR MET ILE SER ASN SER ARG MET CYS VAL SEQRES 30 A 398 ALA GLY LEU ASN SER SER ASN ILE ASP TYR VAL ALA ASN SEQRES 31 A 398 ALA MET VAL ASP VAL LEU LYS ASP SEQRES 1 B 398 MET PHE GLU ARG ILE ASP TYR TYR ALA GLY ASP PRO ILE SEQRES 2 B 398 LEU GLY LEU VAL GLU LYS PHE ALA ALA ASP ASN ASN PRO SEQRES 3 B 398 ASP LYS VAL ASN LEU GLY ILE GLY ILE TYR TYR ASP GLU SEQRES 4 B 398 SER GLY VAL MET PRO VAL LEU ASP CYS VAL LYS ILE ALA SEQRES 5 B 398 GLU GLN ARG ILE ALA ASP PRO ILE SER PRO ARG PRO TYR SEQRES 6 B 398 LEU PRO MET ALA GLY LEU PRO GLY HIS ARG LYS GLY CYS SEQRES 7 B 398 GLN GLU LEU LEU PHE GLY LYS ASP ALA PRO VAL LEU LYS SEQRES 8 B 398 ASP GLY LEU VAL ALA THR ILE ALA THR ILE GLY GLY SER SEQRES 9 B 398 GLY ALA LEU LYS VAL GLY ALA GLU PHE ILE HIS GLU TRP SEQRES 10 B 398 PHE PRO GLN SER LYS CYS TYR VAL SER ASP PRO THR TRP SEQRES 11 B 398 GLY ASN HIS ILE ALA ILE PHE GLU GLY CYS ASP ILE GLU SEQRES 12 B 398 VAL GLY LYS TYR PRO TYR TYR ASP THR ALA THR GLY GLY SEQRES 13 B 398 ILE LYS PHE ASP GLU MET ILE ALA PHE PHE GLU THR LEU SEQRES 14 B 398 ASN LYS ASP ASP VAL LEU LEU LEU HIS PRO CYS CYS HIS SEQRES 15 B 398 ASN PRO THR GLY VAL ASP LEU THR ARG GLU GLN TRP ASP SEQRES 16 B 398 THR VAL LEU ASN VAL ILE GLN GLU ARG GLU LEU ILE PRO SEQRES 17 B 398 PHE MET ASP ILE ALA TYR GLN GLY PHE GLY GLU ASP MET SEQRES 18 B 398 ASP SER ASP ALA TYR ALA ILE ARG LYS ALA VAL ASP MET SEQRES 19 B 398 GLY LEU PRO LEU PHE VAL SER ASN SER PHE SER LYS ASN SEQRES 20 B 398 LEU SER LEU TYR GLY GLU ARG VAL GLY GLY LEU SER VAL SEQRES 21 B 398 VAL CYS PRO THR VAL ASP GLU THR GLU ARG VAL PHE GLY SEQRES 22 B 398 GLN LEU ASN SER THR VAL ARG ARG ILE TYR SER SER PRO SEQRES 23 B 398 PRO SER HIS GLY GLY ARG VAL VAL ASP ILE VAL MET ASN SEQRES 24 B 398 ASP ALA ALA LEU HIS GLU GLN TRP VAL GLY GLU VAL TYR SEQRES 25 B 398 ALA MET ARG ASP ARG ILE LYS SER MET ARG THR LYS LEU SEQRES 26 B 398 LYS SER VAL LEU GLU ALA LYS ILE SER GLY ARG ASN PHE SEQRES 27 B 398 ASP TYR LEU THR ALA GLN ASN GLY MET PHE SER PHE THR SEQRES 28 B 398 GLY LEU THR PRO GLU GLN VAL GLU ARG LEU GLN SER GLU SEQRES 29 B 398 PHE GLY ILE TYR MET ILE SER ASN SER ARG MET CYS VAL SEQRES 30 B 398 ALA GLY LEU ASN SER SER ASN ILE ASP TYR VAL ALA ASN SEQRES 31 B 398 ALA MET VAL ASP VAL LEU LYS ASP HET MG A 401 1 HET NO3 A 402 4 HET NO3 A 403 4 HET NO3 A 404 4 HET NO3 A 405 4 HET NO3 A 406 4 HET NO3 A 407 4 HET NO3 A 408 4 HET PMP A 409 16 HET MG B 401 1 HET NO3 B 402 4 HET NO3 B 403 4 HET NO3 B 404 4 HET PMP B 405 16 HETNAM MG MAGNESIUM ION HETNAM NO3 NITRATE ION HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 NO3 10(N O3 1-) FORMUL 11 PMP 2(C8 H13 N2 O5 P) FORMUL 17 HOH *771(H2 O) HELIX 1 1 ASP A 11 ASP A 23 1 13 HELIX 2 2 LEU A 46 ALA A 57 1 12 HELIX 3 3 LEU A 71 GLY A 84 1 14 HELIX 4 4 ALA A 87 ASP A 92 1 6 HELIX 5 5 ILE A 101 PHE A 118 1 18 HELIX 6 6 TRP A 130 GLY A 139 1 10 HELIX 7 7 LYS A 158 GLU A 167 1 10 HELIX 8 8 THR A 190 GLU A 205 1 16 HELIX 9 9 ASP A 220 ALA A 225 1 6 HELIX 10 10 ALA A 225 MET A 234 1 10 HELIX 11 11 LEU A 250 ARG A 254 5 5 HELIX 12 12 THR A 264 ARG A 281 1 18 HELIX 13 13 PRO A 287 ASP A 300 1 14 HELIX 14 14 ASP A 300 ILE A 333 1 34 HELIX 15 15 PHE A 338 GLN A 344 1 7 HELIX 16 16 THR A 354 GLY A 366 1 13 HELIX 17 17 ALA A 378 LEU A 380 5 3 HELIX 18 18 ASN A 384 LEU A 396 1 13 HELIX 19 19 ILE B 13 ASP B 23 1 11 HELIX 20 20 LEU B 46 ALA B 57 1 12 HELIX 21 21 LEU B 71 GLY B 84 1 14 HELIX 22 22 ALA B 87 ASP B 92 1 6 HELIX 23 23 ILE B 101 PHE B 118 1 18 HELIX 24 24 GLY B 131 GLY B 139 1 9 HELIX 25 25 LYS B 158 THR B 168 1 11 HELIX 26 26 THR B 190 GLU B 205 1 16 HELIX 27 27 ASP B 220 ALA B 225 1 6 HELIX 28 28 ALA B 225 MET B 234 1 10 HELIX 29 29 LEU B 250 ARG B 254 5 5 HELIX 30 30 THR B 264 TYR B 283 1 20 HELIX 31 31 PRO B 287 ASP B 300 1 14 HELIX 32 32 ASP B 300 ILE B 333 1 34 HELIX 33 33 ASP B 339 GLN B 344 1 6 HELIX 34 34 THR B 354 GLY B 366 1 13 HELIX 35 35 ALA B 378 LEU B 380 5 3 HELIX 36 36 ASN B 384 ASP B 398 1 15 SHEET 1 A 2 VAL A 29 ASN A 30 0 SHEET 2 A 2 ILE A 367 TYR A 368 1 O TYR A 368 N VAL A 29 SHEET 1 B 7 VAL A 95 THR A 100 0 SHEET 2 B 7 GLY A 256 VAL A 261 -1 O VAL A 260 N ALA A 96 SHEET 3 B 7 PHE A 239 SER A 243 -1 N VAL A 240 O SER A 259 SHEET 4 B 7 ILE A 207 ILE A 212 1 N MET A 210 O SER A 241 SHEET 5 B 7 VAL A 174 LEU A 177 1 N LEU A 177 O ASP A 211 SHEET 6 B 7 CYS A 123 ASP A 127 1 N TYR A 124 O LEU A 176 SHEET 7 B 7 VAL A 144 PRO A 148 1 O TYR A 147 N VAL A 125 SHEET 1 C 2 PHE A 348 PHE A 350 0 SHEET 2 C 2 ARG A 374 CYS A 376 -1 O MET A 375 N SER A 349 SHEET 1 D 2 VAL B 29 ASN B 30 0 SHEET 2 D 2 ILE B 367 TYR B 368 1 O TYR B 368 N VAL B 29 SHEET 1 E 7 VAL B 95 THR B 100 0 SHEET 2 E 7 GLY B 256 VAL B 261 -1 O VAL B 260 N ALA B 96 SHEET 3 E 7 PHE B 239 SER B 243 -1 N VAL B 240 O SER B 259 SHEET 4 E 7 ILE B 207 ILE B 212 1 N MET B 210 O PHE B 239 SHEET 5 E 7 VAL B 174 LEU B 177 1 N LEU B 175 O PHE B 209 SHEET 6 E 7 CYS B 123 ASP B 127 1 N TYR B 124 O VAL B 174 SHEET 7 E 7 VAL B 144 PRO B 148 1 O TYR B 147 N VAL B 125 SHEET 1 F 2 PHE B 348 PHE B 350 0 SHEET 2 F 2 ARG B 374 CYS B 376 -1 O MET B 375 N SER B 349 LINK MG MG A 401 O HOH A 770 1555 1555 2.16 LINK MG MG A 401 O HOH A 779 1555 1555 2.15 LINK MG MG A 401 O HOH A 780 1555 1555 2.16 LINK MG MG A 401 O HOH A 781 1555 1555 2.15 LINK MG MG A 401 O HOH A 782 1555 1555 2.13 LINK MG MG A 401 O HOH A 869 1555 1555 2.16 LINK O HOH A 526 MG MG B 401 1555 1555 2.15 LINK O HOH A 527 MG MG B 401 1555 1555 2.13 LINK MG MG B 401 O HOH B 542 1555 1555 2.13 LINK MG MG B 401 O HOH B 543 1555 1555 2.17 LINK MG MG B 401 O HOH B 544 1555 1555 2.12 LINK MG MG B 401 O HOH B 592 1555 1555 2.11 CISPEP 1 ASP A 58 PRO A 59 0 0.11 CISPEP 2 ASP A 127 PRO A 128 0 -0.90 CISPEP 3 ASN A 183 PRO A 184 0 20.51 CISPEP 4 ASP B 58 PRO B 59 0 -1.06 CISPEP 5 ASP B 127 PRO B 128 0 0.27 CISPEP 6 ASN B 183 PRO B 184 0 15.09 SITE 1 AC1 6 HOH A 770 HOH A 779 HOH A 780 HOH A 781 SITE 2 AC1 6 HOH A 782 HOH A 869 SITE 1 AC2 10 ILE A 13 ILE A 33 GLY A 34 TRP A 130 SITE 2 AC2 10 ASN A 183 TYR A 214 PHE A 348 ARG A 374 SITE 3 AC2 10 PMP A 409 HOH A 811 SITE 1 AC3 7 MET A 1 PHE A 2 GLU A 3 ARG A 4 SITE 2 AC3 7 ILE A 5 HOH A 540 PHE B 118 SITE 1 AC4 7 LEU A 81 MET A 221 HIS A 304 VAL A 308 SITE 2 AC4 7 HOH A 751 HOH A 804 HOH A 834 SITE 1 AC5 5 GLU A 39 ARG A 317 MET A 321 ASN A 381 SITE 2 AC5 5 SER A 382 SITE 1 AC6 6 SER A 277 ARG A 280 ARG A 281 HOH A 853 SITE 2 AC6 6 TYR B 8 ALA B 135 SITE 1 AC7 3 THR A 342 ALA A 343 ASN A 345 SITE 1 AC8 3 PRO A 72 GLY A 73 LYS A 76 SITE 1 AC9 14 GLY A 102 GLY A 103 SER A 104 TRP A 130 SITE 2 AC9 14 ASN A 183 ASP A 211 TYR A 214 SER A 243 SITE 3 AC9 14 SER A 245 LYS A 246 ARG A 254 NO3 A 402 SITE 4 AC9 14 HOH A 811 TYR B 65 SITE 1 BC1 6 HOH A 526 HOH A 527 HOH B 542 HOH B 543 SITE 2 BC1 6 HOH B 544 HOH B 592 SITE 1 BC2 4 GLY B 34 TRP B 130 ASN B 183 ARG B 374 SITE 1 BC3 4 LEU B 81 MET B 221 HIS B 304 HOH B 771 SITE 1 BC4 5 LYS B 319 ARG B 322 THR B 323 THR B 342 SITE 2 BC4 5 HOH B 633 SITE 1 BC5 15 TYR A 65 GLY B 102 GLY B 103 SER B 104 SITE 2 BC5 15 TRP B 130 ASN B 183 ASP B 211 ALA B 213 SITE 3 BC5 15 TYR B 214 SER B 243 SER B 245 LYS B 246 SITE 4 BC5 15 ARG B 254 HOH B 591 HOH B 870 CRYST1 74.687 62.106 85.895 90.00 102.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013389 0.000000 0.003069 0.00000 SCALE2 0.000000 0.016102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011944 0.00000