HEADER HYDROLASE 13-OCT-14 4RKK TITLE STRUCTURE OF A PRODUCT BOUND PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAFORIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GLUCAN PHOSPHATASE, LAFORA PTPASE, LAFPTPASE; COMPND 5 EC: 3.1.3.-, 3.1.3.16, 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPM2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DUAL SPECIFICITY PHOSPHATASE, CARBOHYDRATE BINDING MODULE, KEYWDS 2 PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.VANDER KOOI REVDAT 4 28-FEB-24 4RKK 1 HETSYN REVDAT 3 29-JUL-20 4RKK 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 04-FEB-15 4RKK 1 JRNL REVDAT 1 07-JAN-15 4RKK 0 JRNL AUTH M.RATHTHAGALA,M.K.BREWER,M.W.PARKER,A.R.SHERWOOD,B.K.WONG, JRNL AUTH 2 S.HSU,T.M.BRIDGES,B.C.PAASCH,L.M.HELLMAN,S.HUSODO, JRNL AUTH 3 D.A.MEEKINS,A.O.TAYLOR,B.D.TURNER,K.D.AUGER,V.V.DUKHANDE, JRNL AUTH 4 S.CHAKRAVARTHY,P.SANZ,V.L.WOODS,S.LI,C.W.VANDER KOOI, JRNL AUTH 5 M.S.GENTRY JRNL TITL STRUCTURAL MECHANISM OF LAFORIN FUNCTION IN GLYCOGEN JRNL TITL 2 DEPHOSPHORYLATION AND LAFORA DISEASE. JRNL REF MOL.CELL V. 57 261 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25544560 JRNL DOI 10.1016/J.MOLCEL.2014.11.020 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 33896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3582 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 345 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5542 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5060 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7571 ; 1.543 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11566 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 5.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;34.430 ;22.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;14.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 879 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5893 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1281 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2526 ; 3.385 ; 6.372 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2525 ; 3.387 ; 6.369 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3151 ; 5.001 ;11.911 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3152 ; 5.000 ;11.916 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3016 ; 5.235 ; 8.145 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3017 ; 5.234 ; 8.148 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4420 ; 7.655 ;14.808 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6040 ; 9.311 ;38.390 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5992 ; 9.316 ;38.253 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4570 75.3160 137.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.0683 REMARK 3 T33: 0.0312 T12: 0.1038 REMARK 3 T13: -0.0111 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.1409 L22: 1.6434 REMARK 3 L33: 1.4378 L12: -0.9442 REMARK 3 L13: -0.5565 L23: -0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.0509 S13: 0.1222 REMARK 3 S21: 0.1654 S22: 0.1613 S23: 0.0178 REMARK 3 S31: -0.3132 S32: -0.2079 S33: -0.0802 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -2 C 323 REMARK 3 ORIGIN FOR THE GROUP (A): 66.8440 33.9660 139.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.0563 REMARK 3 T33: 0.0480 T12: 0.0730 REMARK 3 T13: 0.0547 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.7888 L22: 1.8298 REMARK 3 L33: 1.4029 L12: -1.0206 REMARK 3 L13: 0.6896 L23: -0.3443 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.0683 S13: -0.1384 REMARK 3 S21: 0.1234 S22: 0.1873 S23: 0.0258 REMARK 3 S31: 0.1208 S32: 0.1131 S33: -0.0379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-13; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 5.0; 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : APS; NULL REMARK 200 BEAMLINE : 22-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 1.2148; NULL REMARK 200 MONOCHROMATOR : SI (111); SI (111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.8.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM MALTOHEXAOSE, 0.19 M SODIUM REMARK 280 ACETATE, 0.1 M SODIUM CITRATE, 25.5% PEG3350, 15% GLYCEROL, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K. 250 MM REMARK 280 MALTOHEXAOSE, 0.17 M SODIUM ACETATE, 0.08 M SODIUM CITRATE, 25.5% REMARK 280 PEG4000, 15% GLYCEROL, 30 MM SODIUM TUNGSTATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.56200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.35300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.35300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 240.84300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.35300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.35300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.28100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.35300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.35300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 240.84300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.35300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.35300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.28100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 160.56200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 69 REMARK 465 GLU A 70 REMARK 465 ALA A 71 REMARK 465 ALA A 72 REMARK 465 GLN A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 ALA A 76 REMARK 465 GLU A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 VAL A 328 REMARK 465 CYS A 329 REMARK 465 GLU C 69 REMARK 465 GLU C 70 REMARK 465 ALA C 71 REMARK 465 ALA C 72 REMARK 465 GLN C 73 REMARK 465 ASP C 74 REMARK 465 GLY C 75 REMARK 465 ALA C 76 REMARK 465 GLU C 77 REMARK 465 PRO C 78 REMARK 465 GLY C 79 REMARK 465 VAL C 324 REMARK 465 ARG C 325 REMARK 465 SER C 326 REMARK 465 SER C 327 REMARK 465 VAL C 328 REMARK 465 CYS C 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 97.83 -171.36 REMARK 500 SER A 266 -144.85 -137.45 REMARK 500 ARG A 300 82.14 -151.24 REMARK 500 ASN C 102 83.29 -171.35 REMARK 500 SER C 266 -144.14 -145.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLC D 1 REMARK 610 GLC G 1 REMARK 610 GLC H 1 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE SUBSTRATE ANALOG REMARK 630 MOLECULE NAME: ALPHA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 GLC A 417 REMARK 630 GLC C 415 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE DBREF 4RKK A 1 329 UNP O95278 EPM2A_HUMAN 1 329 DBREF 4RKK C 1 329 UNP O95278 EPM2A_HUMAN 1 329 SEQADV 4RKK GLY A -2 UNP O95278 EXPRESSION TAG SEQADV 4RKK SER A -1 UNP O95278 EXPRESSION TAG SEQADV 4RKK HIS A 0 UNP O95278 EXPRESSION TAG SEQADV 4RKK SER A 266 UNP O95278 CYS 266 ENGINEERED MUTATION SEQADV 4RKK GLY C -2 UNP O95278 EXPRESSION TAG SEQADV 4RKK SER C -1 UNP O95278 EXPRESSION TAG SEQADV 4RKK HIS C 0 UNP O95278 EXPRESSION TAG SEQADV 4RKK SER C 266 UNP O95278 CYS 266 ENGINEERED MUTATION SEQRES 1 A 332 GLY SER HIS MET ARG PHE ARG PHE GLY VAL VAL VAL PRO SEQRES 2 A 332 PRO ALA VAL ALA GLY ALA ARG PRO GLU LEU LEU VAL VAL SEQRES 3 A 332 GLY SER ARG PRO GLU LEU GLY ARG TRP GLU PRO ARG GLY SEQRES 4 A 332 ALA VAL ARG LEU ARG PRO ALA GLY THR ALA ALA GLY ASP SEQRES 5 A 332 GLY ALA LEU ALA LEU GLN GLU PRO GLY LEU TRP LEU GLY SEQRES 6 A 332 GLU VAL GLU LEU ALA ALA GLU GLU ALA ALA GLN ASP GLY SEQRES 7 A 332 ALA GLU PRO GLY ARG VAL ASP THR PHE TRP TYR LYS PHE SEQRES 8 A 332 LEU LYS ARG GLU PRO GLY GLY GLU LEU SER TRP GLU GLY SEQRES 9 A 332 ASN GLY PRO HIS HIS ASP ARG CYS CYS THR TYR ASN GLU SEQRES 10 A 332 ASN ASN LEU VAL ASP GLY VAL TYR CYS LEU PRO ILE GLY SEQRES 11 A 332 HIS TRP ILE GLU ALA THR GLY HIS THR ASN GLU MET LYS SEQRES 12 A 332 HIS THR THR ASP PHE TYR PHE ASN ILE ALA GLY HIS GLN SEQRES 13 A 332 ALA MET HIS TYR SER ARG ILE LEU PRO ASN ILE TRP LEU SEQRES 14 A 332 GLY SER CYS PRO ARG GLN VAL GLU HIS VAL THR ILE LYS SEQRES 15 A 332 LEU LYS HIS GLU LEU GLY ILE THR ALA VAL MET ASN PHE SEQRES 16 A 332 GLN THR GLU TRP ASP ILE VAL GLN ASN SER SER GLY CYS SEQRES 17 A 332 ASN ARG TYR PRO GLU PRO MET THR PRO ASP THR MET ILE SEQRES 18 A 332 LYS LEU TYR ARG GLU GLU GLY LEU ALA TYR ILE TRP MET SEQRES 19 A 332 PRO THR PRO ASP MET SER THR GLU GLY ARG VAL GLN MET SEQRES 20 A 332 LEU PRO GLN ALA VAL CYS LEU LEU HIS ALA LEU LEU GLU SEQRES 21 A 332 LYS GLY HIS ILE VAL TYR VAL HIS SER ASN ALA GLY VAL SEQRES 22 A 332 GLY ARG SER THR ALA ALA VAL CYS GLY TRP LEU GLN TYR SEQRES 23 A 332 VAL MET GLY TRP ASN LEU ARG LYS VAL GLN TYR PHE LEU SEQRES 24 A 332 MET ALA LYS ARG PRO ALA VAL TYR ILE ASP GLU GLU ALA SEQRES 25 A 332 LEU ALA ARG ALA GLN GLU ASP PHE PHE GLN LYS PHE GLY SEQRES 26 A 332 LYS VAL ARG SER SER VAL CYS SEQRES 1 C 332 GLY SER HIS MET ARG PHE ARG PHE GLY VAL VAL VAL PRO SEQRES 2 C 332 PRO ALA VAL ALA GLY ALA ARG PRO GLU LEU LEU VAL VAL SEQRES 3 C 332 GLY SER ARG PRO GLU LEU GLY ARG TRP GLU PRO ARG GLY SEQRES 4 C 332 ALA VAL ARG LEU ARG PRO ALA GLY THR ALA ALA GLY ASP SEQRES 5 C 332 GLY ALA LEU ALA LEU GLN GLU PRO GLY LEU TRP LEU GLY SEQRES 6 C 332 GLU VAL GLU LEU ALA ALA GLU GLU ALA ALA GLN ASP GLY SEQRES 7 C 332 ALA GLU PRO GLY ARG VAL ASP THR PHE TRP TYR LYS PHE SEQRES 8 C 332 LEU LYS ARG GLU PRO GLY GLY GLU LEU SER TRP GLU GLY SEQRES 9 C 332 ASN GLY PRO HIS HIS ASP ARG CYS CYS THR TYR ASN GLU SEQRES 10 C 332 ASN ASN LEU VAL ASP GLY VAL TYR CYS LEU PRO ILE GLY SEQRES 11 C 332 HIS TRP ILE GLU ALA THR GLY HIS THR ASN GLU MET LYS SEQRES 12 C 332 HIS THR THR ASP PHE TYR PHE ASN ILE ALA GLY HIS GLN SEQRES 13 C 332 ALA MET HIS TYR SER ARG ILE LEU PRO ASN ILE TRP LEU SEQRES 14 C 332 GLY SER CYS PRO ARG GLN VAL GLU HIS VAL THR ILE LYS SEQRES 15 C 332 LEU LYS HIS GLU LEU GLY ILE THR ALA VAL MET ASN PHE SEQRES 16 C 332 GLN THR GLU TRP ASP ILE VAL GLN ASN SER SER GLY CYS SEQRES 17 C 332 ASN ARG TYR PRO GLU PRO MET THR PRO ASP THR MET ILE SEQRES 18 C 332 LYS LEU TYR ARG GLU GLU GLY LEU ALA TYR ILE TRP MET SEQRES 19 C 332 PRO THR PRO ASP MET SER THR GLU GLY ARG VAL GLN MET SEQRES 20 C 332 LEU PRO GLN ALA VAL CYS LEU LEU HIS ALA LEU LEU GLU SEQRES 21 C 332 LYS GLY HIS ILE VAL TYR VAL HIS SER ASN ALA GLY VAL SEQRES 22 C 332 GLY ARG SER THR ALA ALA VAL CYS GLY TRP LEU GLN TYR SEQRES 23 C 332 VAL MET GLY TRP ASN LEU ARG LYS VAL GLN TYR PHE LEU SEQRES 24 C 332 MET ALA LYS ARG PRO ALA VAL TYR ILE ASP GLU GLU ALA SEQRES 25 C 332 LEU ALA ARG ALA GLN GLU ASP PHE PHE GLN LYS PHE GLY SEQRES 26 C 332 LYS VAL ARG SER SER VAL CYS HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC B 5 11 HET GLC B 6 11 HET GLC D 1 11 HET GLC D 2 11 HET GLC D 3 11 HET GLC E 1 12 HET GLC E 2 11 HET GLC E 3 11 HET GLC E 4 11 HET GLC E 5 11 HET GLC E 6 11 HET GLC F 1 12 HET GLC F 2 11 HET GLC F 3 11 HET GLC F 4 11 HET GLC F 5 11 HET GLC F 6 11 HET GLC G 1 11 HET GLC G 2 11 HET GLC G 3 11 HET GLC H 1 11 HET GLC H 2 11 HET GLC H 3 11 HET GLC H 4 11 HET PO4 A 401 5 HET GLC A 417 12 HET PO4 C 401 5 HET GLC C 415 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 30(C6 H12 O6) FORMUL 9 PO4 2(O4 P 3-) FORMUL 13 HOH *144(H2 O) HELIX 1 1 PRO A 10 GLY A 15 1 6 HELIX 2 2 ARG A 26 GLY A 30 5 5 HELIX 3 3 GLU A 33 ALA A 37 5 5 HELIX 4 4 GLY A 103 ASP A 107 5 5 HELIX 5 5 ASN A 113 ASN A 115 5 3 HELIX 6 6 ASN A 137 HIS A 152 1 16 HELIX 7 7 GLN A 172 ILE A 178 1 7 HELIX 8 8 THR A 194 SER A 203 1 10 HELIX 9 9 GLY A 204 ASN A 206 5 3 HELIX 10 10 THR A 213 GLY A 225 1 13 HELIX 11 11 SER A 237 LYS A 258 1 22 HELIX 12 12 GLY A 271 VAL A 284 1 14 HELIX 13 13 ASN A 288 ARG A 300 1 13 HELIX 14 14 ASP A 306 GLY A 322 1 17 HELIX 15 15 PRO C 10 ALA C 16 1 7 HELIX 16 16 ARG C 26 GLY C 30 5 5 HELIX 17 17 GLU C 33 ALA C 37 5 5 HELIX 18 18 GLY C 103 ASP C 107 5 5 HELIX 19 19 ASN C 113 ASN C 115 5 3 HELIX 20 20 ASN C 137 GLY C 151 1 15 HELIX 21 21 GLN C 172 ILE C 178 1 7 HELIX 22 22 THR C 194 SER C 202 1 9 HELIX 23 23 SER C 203 ASN C 206 5 4 HELIX 24 24 THR C 213 GLY C 225 1 13 HELIX 25 25 SER C 237 LYS C 258 1 22 HELIX 26 26 GLY C 271 VAL C 284 1 14 HELIX 27 27 ASN C 288 ARG C 300 1 13 HELIX 28 28 ASP C 306 GLY C 322 1 17 SHEET 1 A 5 ARG A 41 PRO A 42 0 SHEET 2 A 5 GLY A 58 ALA A 67 -1 O LEU A 61 N ARG A 41 SHEET 3 A 5 HIS A 0 VAL A 9 -1 N VAL A 9 O GLY A 58 SHEET 4 A 5 VAL A 121 CYS A 123 1 O TYR A 122 N ARG A 2 SHEET 5 A 5 LEU A 117 VAL A 118 -1 N VAL A 118 O VAL A 121 SHEET 1 B 4 ARG A 41 PRO A 42 0 SHEET 2 B 4 GLY A 58 ALA A 67 -1 O LEU A 61 N ARG A 41 SHEET 3 B 4 HIS A 0 VAL A 9 -1 N VAL A 9 O GLY A 58 SHEET 4 B 4 GLY A 127 HIS A 128 1 O GLY A 127 N GLY A 6 SHEET 1 C 4 VAL A 38 ARG A 39 0 SHEET 2 C 4 GLU A 19 GLY A 24 -1 N VAL A 22 O VAL A 38 SHEET 3 C 4 PHE A 84 ARG A 91 -1 O LEU A 89 N LEU A 21 SHEET 4 C 4 LEU A 97 TRP A 99 -1 O SER A 98 N LYS A 90 SHEET 1 D 4 VAL A 38 ARG A 39 0 SHEET 2 D 4 GLU A 19 GLY A 24 -1 N VAL A 22 O VAL A 38 SHEET 3 D 4 PHE A 84 ARG A 91 -1 O LEU A 89 N LEU A 21 SHEET 4 D 4 ARG A 108 CYS A 110 -1 O CYS A 110 N PHE A 84 SHEET 1 E 5 TYR A 157 LEU A 161 0 SHEET 2 E 5 ILE A 164 GLY A 167 -1 O LEU A 166 N SER A 158 SHEET 3 E 5 VAL A 262 HIS A 265 1 O VAL A 264 N TRP A 165 SHEET 4 E 5 ALA A 188 ASN A 191 1 N MET A 190 O HIS A 265 SHEET 5 E 5 ALA A 227 TRP A 230 1 O ILE A 229 N VAL A 189 SHEET 1 F 5 ARG C 41 PRO C 42 0 SHEET 2 F 5 GLY C 58 ALA C 67 -1 O LEU C 61 N ARG C 41 SHEET 3 F 5 HIS C 0 VAL C 9 -1 N PHE C 3 O VAL C 64 SHEET 4 F 5 VAL C 121 CYS C 123 1 O TYR C 122 N ARG C 4 SHEET 5 F 5 LEU C 117 VAL C 118 -1 N VAL C 118 O VAL C 121 SHEET 1 G 4 ARG C 41 PRO C 42 0 SHEET 2 G 4 GLY C 58 ALA C 67 -1 O LEU C 61 N ARG C 41 SHEET 3 G 4 HIS C 0 VAL C 9 -1 N PHE C 3 O VAL C 64 SHEET 4 G 4 GLY C 127 HIS C 128 1 O GLY C 127 N GLY C 6 SHEET 1 H 4 VAL C 38 ARG C 39 0 SHEET 2 H 4 GLU C 19 GLY C 24 -1 N VAL C 22 O VAL C 38 SHEET 3 H 4 PHE C 84 ARG C 91 -1 O ARG C 91 N GLU C 19 SHEET 4 H 4 LEU C 97 TRP C 99 -1 O SER C 98 N LYS C 90 SHEET 1 I 4 VAL C 38 ARG C 39 0 SHEET 2 I 4 GLU C 19 GLY C 24 -1 N VAL C 22 O VAL C 38 SHEET 3 I 4 PHE C 84 ARG C 91 -1 O ARG C 91 N GLU C 19 SHEET 4 I 4 ARG C 108 CYS C 110 -1 O CYS C 110 N PHE C 84 SHEET 1 J 5 TYR C 157 LEU C 161 0 SHEET 2 J 5 ILE C 164 GLY C 167 -1 O LEU C 166 N SER C 158 SHEET 3 J 5 VAL C 262 HIS C 265 1 O VAL C 264 N TRP C 165 SHEET 4 J 5 ALA C 188 ASN C 191 1 N ALA C 188 O TYR C 263 SHEET 5 J 5 ALA C 227 TRP C 230 1 O ILE C 229 N VAL C 189 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.45 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.45 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.45 LINK O4 GLC B 4 C1 GLC B 5 1555 1555 1.45 LINK O4 GLC B 5 C1 GLC B 6 1555 1555 1.45 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.45 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.45 LINK O4 GLC E 1 C1 GLC E 2 1555 1555 1.45 LINK O4 GLC E 2 C1 GLC E 3 1555 1555 1.45 LINK O4 GLC E 3 C1 GLC E 4 1555 1555 1.45 LINK O4 GLC E 4 C1 GLC E 5 1555 1555 1.44 LINK O4 GLC E 5 C1 GLC E 6 1555 1555 1.44 LINK O4 GLC F 1 C1 GLC F 2 1555 1555 1.44 LINK O4 GLC F 2 C1 GLC F 3 1555 1555 1.44 LINK O4 GLC F 3 C1 GLC F 4 1555 1555 1.44 LINK O4 GLC F 4 C1 GLC F 5 1555 1555 1.45 LINK O4 GLC F 5 C1 GLC F 6 1555 1555 1.44 LINK O4 GLC G 1 C1 GLC G 2 1555 1555 1.45 LINK O4 GLC G 2 C1 GLC G 3 1555 1555 1.46 LINK O4 GLC H 1 C1 GLC H 2 1555 1555 1.45 LINK O4 GLC H 2 C1 GLC H 3 1555 1555 1.45 LINK O4 GLC H 3 C1 GLC H 4 1555 1555 1.44 CRYST1 78.706 78.706 321.124 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003114 0.00000