HEADER HYDROLASE 14-OCT-14 4RL0
TITLE STRUCTURAL AND MECHANISTIC INSIGHTS INTO NDM-1 CATALYZED HYDROLYSIS OF
TITLE 2 CEPHALOSPORINS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1;
COMPND 5 EC: 3.5.2.6;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLANDM-1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NDM-1 ANTIBIOTIC HYDROLYSIS, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.FENG,J.DING,D.ZHU,X.LIU,X.XU,Y.ZHANG,S.ZANG,D.-C.WANG,W.LIU
REVDAT 2 28-FEB-24 4RL0 1 REMARK LINK
REVDAT 1 19-NOV-14 4RL0 0
JRNL AUTH H.FENG,J.DING,D.ZHU,X.LIU,X.XU,Y.ZHANG,S.ZANG,D.C.WANG,W.LIU
JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO NDM-1 CATALYZED
JRNL TITL 2 HYDROLYSIS OF CEPHALOSPORINS.
JRNL REF J.AM.CHEM.SOC. V. 136 14694 2014
JRNL REFN ISSN 0002-7863
JRNL PMID 25268575
JRNL DOI 10.1021/JA508388E
REMARK 2
REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4
REMARK 3 NUMBER OF REFLECTIONS : 93511
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.132
REMARK 3 R VALUE (WORKING SET) : 0.131
REMARK 3 FREE R VALUE : 0.157
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940
REMARK 3 FREE R VALUE TEST SET COUNT : 4618
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 29.3714 - 4.0361 0.93 3291 168 0.1713 0.1784
REMARK 3 2 4.0361 - 3.2048 0.99 3339 144 0.1421 0.1334
REMARK 3 3 3.2048 - 2.8001 0.91 2988 162 0.1459 0.1682
REMARK 3 4 2.8001 - 2.5442 0.97 3204 171 0.1425 0.1397
REMARK 3 5 2.5442 - 2.3619 0.97 3170 182 0.1439 0.1719
REMARK 3 6 2.3619 - 2.2227 0.97 3162 155 0.1299 0.1619
REMARK 3 7 2.2227 - 2.1115 0.97 3200 141 0.1214 0.1394
REMARK 3 8 2.1115 - 2.0196 0.97 3159 157 0.1206 0.1337
REMARK 3 9 2.0196 - 1.9418 0.97 3145 163 0.1147 0.1495
REMARK 3 10 1.9418 - 1.8748 0.97 3114 160 0.1130 0.1361
REMARK 3 11 1.8748 - 1.8162 0.96 3145 177 0.1137 0.1668
REMARK 3 12 1.8162 - 1.7643 0.96 3056 175 0.1101 0.1432
REMARK 3 13 1.7643 - 1.7179 0.95 3059 168 0.1138 0.1567
REMARK 3 14 1.7179 - 1.6760 0.94 3033 175 0.1139 0.1479
REMARK 3 15 1.6760 - 1.6379 0.94 2997 150 0.1137 0.1762
REMARK 3 16 1.6379 - 1.6030 0.92 2968 161 0.1136 0.1284
REMARK 3 17 1.6030 - 1.5710 0.92 2922 158 0.1068 0.1583
REMARK 3 18 1.5710 - 1.5413 0.90 2885 162 0.1076 0.1606
REMARK 3 19 1.5413 - 1.5138 0.90 2885 148 0.1029 0.1570
REMARK 3 20 1.5138 - 1.4881 0.88 2849 128 0.1134 0.1535
REMARK 3 21 1.4881 - 1.4641 0.88 2788 145 0.1182 0.1827
REMARK 3 22 1.4641 - 1.4416 0.86 2778 154 0.1202 0.1688
REMARK 3 23 1.4416 - 1.4204 0.86 2750 154 0.1168 0.1714
REMARK 3 24 1.4204 - 1.4004 0.86 2730 133 0.1091 0.1441
REMARK 3 25 1.4004 - 1.3815 0.85 2768 145 0.1107 0.1606
REMARK 3 26 1.3815 - 1.3635 0.85 2710 141 0.1189 0.1706
REMARK 3 27 1.3635 - 1.3465 0.85 2711 149 0.1223 0.1845
REMARK 3 28 1.3465 - 1.3303 0.83 2705 120 0.1291 0.2034
REMARK 3 29 1.3303 - 1.3148 0.84 2690 134 0.1332 0.2071
REMARK 3 30 1.3148 - 1.3000 0.84 2692 138 0.1389 0.1924
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.060
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 3640
REMARK 3 ANGLE : 1.433 4953
REMARK 3 CHIRALITY : 0.088 551
REMARK 3 PLANARITY : 0.008 655
REMARK 3 DIHEDRAL : 13.458 1339
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4RL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14.
REMARK 100 THE DEPOSITION ID IS D_1000087477.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-APR-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93575
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300
REMARK 200 RESOLUTION RANGE LOW (A) : 29.364
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37
REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASES
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.67
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG3350, 0.1M BIS-TRIS PH
REMARK 280 6.0 AND 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.53000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.44500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.53000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.44500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 29
REMARK 465 GLU A 30
REMARK 465 ILE A 31
REMARK 465 GLY A 36
REMARK 465 GLN A 37
REMARK 465 GLN A 38
REMARK 465 MET A 39
REMARK 465 GLU A 40
REMARK 465 THR A 41
REMARK 465 GLY A 42
REMARK 465 PRO A 68
REMARK 465 GLY A 69
REMARK 465 GLY B 29
REMARK 465 GLU B 30
REMARK 465 ILE B 31
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP B 48 O HOH B 699 1.80
REMARK 500 O HOH A 694 O HOH A 695 1.84
REMARK 500 O HOH B 678 O HOH B 685 1.86
REMARK 500 O HOH A 719 O HOH A 725 1.86
REMARK 500 N ARG B 32 O HOH B 537 1.92
REMARK 500 O HOH A 624 O HOH A 660 1.92
REMARK 500 O HOH A 521 O HOH A 551 1.93
REMARK 500 O HOH A 662 O HOH A 726 1.94
REMARK 500 O HOH A 612 O HOH A 695 1.95
REMARK 500 O HOH A 564 O HOH A 570 1.97
REMARK 500 O HOH B 451 O HOH B 647 1.98
REMARK 500 O HOH B 658 O HOH B 689 2.02
REMARK 500 OD1 ASP A 199 O HOH A 686 2.04
REMARK 500 OD2 ASP A 130 O HOH A 661 2.05
REMARK 500 O HOH B 549 O HOH B 683 2.06
REMARK 500 O HOH B 641 O HOH B 692 2.07
REMARK 500 O HOH A 576 O HOH A 732 2.08
REMARK 500 CB ASP A 199 O HOH A 686 2.08
REMARK 500 N PHE A 70 O HOH A 529 2.08
REMARK 500 O HOH B 520 O HOH B 576 2.09
REMARK 500 O HOH B 527 O HOH B 666 2.09
REMARK 500 OD1 ASP A 96 O HOH A 590 2.09
REMARK 500 N ASP A 43 O HOH A 576 2.12
REMARK 500 O HOH B 580 O HOH B 664 2.12
REMARK 500 O HOH B 503 O HOH B 522 2.12
REMARK 500 O HOH A 599 O HOH A 611 2.13
REMARK 500 O HOH B 609 O HOH B 709 2.15
REMARK 500 O HOH A 587 O HOH A 697 2.15
REMARK 500 O HOH A 553 O HOH A 680 2.16
REMARK 500 OD1 ASP B 96 O HOH B 595 2.16
REMARK 500 O HOH B 642 O HOH B 645 2.16
REMARK 500 OH TYR A 64 O HOH A 540 2.17
REMARK 500 OD1 ASP A 82 O HOH A 528 2.18
REMARK 500 O HOH B 544 O HOH B 643 2.18
REMARK 500 O HOH A 469 O HOH A 626 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH B 624 O HOH B 627 1455 1.83
REMARK 500 O HOH A 721 O HOH B 695 3655 1.89
REMARK 500 O HOH A 612 O HOH B 685 3655 1.93
REMARK 500 O HOH A 518 O HOH B 666 3555 1.99
REMARK 500 O HOH A 733 O HOH B 705 3655 2.01
REMARK 500 O HOH A 660 O HOH B 603 3655 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 90 141.85 74.67
REMARK 500 ASP B 90 144.41 74.80
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 120 NE2
REMARK 620 2 HIS A 122 ND1 99.6
REMARK 620 3 HIS A 189 NE2 101.3 117.2
REMARK 620 4 HOH A 426 O 104.2 115.6 115.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 124 OD2
REMARK 620 2 CYS A 208 SG 103.2
REMARK 620 3 HIS A 250 NE2 86.7 103.2
REMARK 620 4 3S0 A 303 OAX 162.5 94.2 88.3
REMARK 620 5 3S0 A 303 NAR 93.1 159.3 90.2 70.2
REMARK 620 6 HOH A 426 O 79.6 95.9 158.6 99.9 74.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 120 NE2
REMARK 620 2 HIS B 122 ND1 98.6
REMARK 620 3 HIS B 189 NE2 103.2 117.0
REMARK 620 4 HOH B 419 O 104.5 115.9 114.3
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 124 OD2
REMARK 620 2 CYS B 208 SG 102.1
REMARK 620 3 HIS B 250 NE2 86.6 104.0
REMARK 620 4 3S0 B 303 OAY 163.8 94.0 88.0
REMARK 620 5 3S0 B 303 NAR 94.0 160.7 87.4 70.5
REMARK 620 6 HOH B 419 O 79.5 95.0 158.4 100.9 77.3
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S0 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S0 B 303
DBREF 4RL0 A 29 270 UNP C7C422 BLAN1_KLEPN 29 270
DBREF 4RL0 B 29 270 UNP C7C422 BLAN1_KLEPN 29 270
SEQRES 1 A 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR
SEQRES 2 A 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU
SEQRES 3 A 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET
SEQRES 4 A 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL
SEQRES 5 A 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP
SEQRES 6 A 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS
SEQRES 7 A 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR
SEQRES 8 A 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU
SEQRES 9 A 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER
SEQRES 10 A 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN
SEQRES 11 A 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO
SEQRES 12 A 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR
SEQRES 13 A 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY
SEQRES 14 A 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE
SEQRES 15 A 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP
SEQRES 16 A 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE
SEQRES 17 A 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER
SEQRES 18 A 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR
SEQRES 19 A 242 ALA ARG MET ALA ASP LYS LEU ARG
SEQRES 1 B 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR
SEQRES 2 B 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU
SEQRES 3 B 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET
SEQRES 4 B 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL
SEQRES 5 B 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP
SEQRES 6 B 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS
SEQRES 7 B 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR
SEQRES 8 B 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU
SEQRES 9 B 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER
SEQRES 10 B 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN
SEQRES 11 B 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO
SEQRES 12 B 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR
SEQRES 13 B 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY
SEQRES 14 B 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE
SEQRES 15 B 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP
SEQRES 16 B 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE
SEQRES 17 B 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER
SEQRES 18 B 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR
SEQRES 19 B 242 ALA ARG MET ALA ASP LYS LEU ARG
HET ZN A 301 1
HET ZN A 302 1
HET 3S0 A 303 45
HET ZN B 301 1
HET ZN B 302 1
HET 3S0 B 303 45
HETNAM ZN ZINC ION
HETNAM 3S0 (2R,5S)-5-[(CARBAMOYLOXY)METHYL]-2-[(R)-CARBOXY{[(2Z)-
HETNAM 2 3S0 2-(FURAN-2-YL)-2-(METHOXYIMINO)ACETYL]AMINO}METHYL]-5,
HETNAM 3 3S0 6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
FORMUL 3 ZN 4(ZN 2+)
FORMUL 5 3S0 2(C16 H18 N4 O9 S)
FORMUL 9 HOH *645(H2 O)
HELIX 1 1 THR A 94 ILE A 109 1 16
HELIX 2 2 HIS A 122 GLY A 127 1 6
HELIX 3 3 GLY A 128 ALA A 135 1 8
HELIX 4 4 ALA A 143 ALA A 149 1 7
HELIX 5 5 PRO A 150 GLY A 153 5 4
HELIX 6 6 GLU A 170 ALA A 174 5 5
HELIX 7 7 HIS A 228 PHE A 240 1 13
HELIX 8 8 ARG A 256 LYS A 268 1 13
HELIX 9 9 THR B 94 ILE B 109 1 16
HELIX 10 10 HIS B 122 GLY B 127 1 6
HELIX 11 11 GLY B 128 ALA B 135 1 8
HELIX 12 12 ALA B 143 ALA B 149 1 7
HELIX 13 13 PRO B 150 GLY B 153 5 4
HELIX 14 14 GLU B 170 ALA B 174 5 5
HELIX 15 15 CYS B 208 ILE B 210 5 3
HELIX 16 16 HIS B 228 PHE B 240 1 13
HELIX 17 17 ARG B 256 LYS B 268 1 13
SHEET 1 A 8 GLN A 44 PHE A 46 0
SHEET 2 A 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44
SHEET 3 A 8 VAL A 58 ASP A 66 -1 O GLN A 60 N ARG A 52
SHEET 4 A 8 ALA A 72 ASP A 82 -1 O ILE A 79 N TRP A 59
SHEET 5 A 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80
SHEET 6 A 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88
SHEET 7 A 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116
SHEET 8 A 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141
SHEET 1 B 4 LEU A 180 PHE A 183 0
SHEET 2 B 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181
SHEET 3 B 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196
SHEET 4 B 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206
SHEET 1 C 8 ASP B 43 PHE B 46 0
SHEET 2 C 8 LEU B 49 ALA B 55 -1 O LEU B 49 N PHE B 46
SHEET 3 C 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52
SHEET 4 C 8 GLY B 71 ASP B 82 -1 O ILE B 79 N TRP B 59
SHEET 5 C 8 ARG B 85 VAL B 89 -1 O LEU B 87 N VAL B 80
SHEET 6 C 8 VAL B 113 VAL B 117 1 O ALA B 114 N VAL B 86
SHEET 7 C 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116
SHEET 8 C 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141
SHEET 1 D 4 LEU B 180 PHE B 183 0
SHEET 2 D 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181
SHEET 3 D 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196
SHEET 4 D 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206
LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.10
LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 1.96
LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 2.01
LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.02
LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.35
LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.15
LINK ZN ZN A 301 O HOH A 426 1555 1555 2.01
LINK ZN ZN A 302 OAX 3S0 A 303 1555 1555 2.14
LINK ZN ZN A 302 NAR 3S0 A 303 1555 1555 2.36
LINK ZN ZN A 302 O HOH A 426 1555 1555 2.17
LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.08
LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 1.97
LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 2.03
LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 1.98
LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.34
LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.14
LINK ZN ZN B 301 O HOH B 419 1555 1555 2.03
LINK ZN ZN B 302 OAY 3S0 B 303 1555 1555 2.17
LINK ZN ZN B 302 NAR 3S0 B 303 1555 1555 2.32
LINK ZN ZN B 302 O HOH B 419 1555 1555 2.17
SITE 1 AC1 5 HIS A 120 HIS A 122 HIS A 189 3S0 A 303
SITE 2 AC1 5 HOH A 426
SITE 1 AC2 5 ASP A 124 CYS A 208 HIS A 250 3S0 A 303
SITE 2 AC2 5 HOH A 426
SITE 1 AC3 21 ILE A 35 LEU A 65 TRP A 93 HIS A 122
SITE 2 AC3 21 GLN A 123 ASP A 124 GLU A 152 HIS A 189
SITE 3 AC3 21 CYS A 208 LYS A 211 GLY A 219 ASN A 220
SITE 4 AC3 21 HIS A 250 ZN A 301 ZN A 302 HOH A 426
SITE 5 AC3 21 HOH A 563 THR B 34 PRO B 68 GLY B 69
SITE 6 AC3 21 PHE B 70
SITE 1 AC4 5 HIS B 120 HIS B 122 HIS B 189 3S0 B 303
SITE 2 AC4 5 HOH B 419
SITE 1 AC5 5 ASP B 124 CYS B 208 HIS B 250 3S0 B 303
SITE 2 AC5 5 HOH B 419
SITE 1 AC6 19 THR A 34 PHE A 70 HOH A 529 ILE B 35
SITE 2 AC6 19 LEU B 65 TRP B 93 HIS B 122 GLN B 123
SITE 3 AC6 19 ASP B 124 HIS B 189 CYS B 208 LYS B 211
SITE 4 AC6 19 GLY B 219 ASN B 220 HIS B 250 ZN B 301
SITE 5 AC6 19 ZN B 302 HOH B 419 HOH B 592
CRYST1 39.180 78.890 133.060 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025523 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012676 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007515 0.00000