HEADER HYDROLASE 14-OCT-14 4RL0 TITLE STRUCTURAL AND MECHANISTIC INSIGHTS INTO NDM-1 CATALYZED HYDROLYSIS OF TITLE 2 CEPHALOSPORINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NDM-1 ANTIBIOTIC HYDROLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.FENG,J.DING,D.ZHU,X.LIU,X.XU,Y.ZHANG,S.ZANG,D.-C.WANG,W.LIU REVDAT 2 28-FEB-24 4RL0 1 REMARK LINK REVDAT 1 19-NOV-14 4RL0 0 JRNL AUTH H.FENG,J.DING,D.ZHU,X.LIU,X.XU,Y.ZHANG,S.ZANG,D.C.WANG,W.LIU JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO NDM-1 CATALYZED JRNL TITL 2 HYDROLYSIS OF CEPHALOSPORINS. JRNL REF J.AM.CHEM.SOC. V. 136 14694 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 25268575 JRNL DOI 10.1021/JA508388E REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 93511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 4618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3714 - 4.0361 0.93 3291 168 0.1713 0.1784 REMARK 3 2 4.0361 - 3.2048 0.99 3339 144 0.1421 0.1334 REMARK 3 3 3.2048 - 2.8001 0.91 2988 162 0.1459 0.1682 REMARK 3 4 2.8001 - 2.5442 0.97 3204 171 0.1425 0.1397 REMARK 3 5 2.5442 - 2.3619 0.97 3170 182 0.1439 0.1719 REMARK 3 6 2.3619 - 2.2227 0.97 3162 155 0.1299 0.1619 REMARK 3 7 2.2227 - 2.1115 0.97 3200 141 0.1214 0.1394 REMARK 3 8 2.1115 - 2.0196 0.97 3159 157 0.1206 0.1337 REMARK 3 9 2.0196 - 1.9418 0.97 3145 163 0.1147 0.1495 REMARK 3 10 1.9418 - 1.8748 0.97 3114 160 0.1130 0.1361 REMARK 3 11 1.8748 - 1.8162 0.96 3145 177 0.1137 0.1668 REMARK 3 12 1.8162 - 1.7643 0.96 3056 175 0.1101 0.1432 REMARK 3 13 1.7643 - 1.7179 0.95 3059 168 0.1138 0.1567 REMARK 3 14 1.7179 - 1.6760 0.94 3033 175 0.1139 0.1479 REMARK 3 15 1.6760 - 1.6379 0.94 2997 150 0.1137 0.1762 REMARK 3 16 1.6379 - 1.6030 0.92 2968 161 0.1136 0.1284 REMARK 3 17 1.6030 - 1.5710 0.92 2922 158 0.1068 0.1583 REMARK 3 18 1.5710 - 1.5413 0.90 2885 162 0.1076 0.1606 REMARK 3 19 1.5413 - 1.5138 0.90 2885 148 0.1029 0.1570 REMARK 3 20 1.5138 - 1.4881 0.88 2849 128 0.1134 0.1535 REMARK 3 21 1.4881 - 1.4641 0.88 2788 145 0.1182 0.1827 REMARK 3 22 1.4641 - 1.4416 0.86 2778 154 0.1202 0.1688 REMARK 3 23 1.4416 - 1.4204 0.86 2750 154 0.1168 0.1714 REMARK 3 24 1.4204 - 1.4004 0.86 2730 133 0.1091 0.1441 REMARK 3 25 1.4004 - 1.3815 0.85 2768 145 0.1107 0.1606 REMARK 3 26 1.3815 - 1.3635 0.85 2710 141 0.1189 0.1706 REMARK 3 27 1.3635 - 1.3465 0.85 2711 149 0.1223 0.1845 REMARK 3 28 1.3465 - 1.3303 0.83 2705 120 0.1291 0.2034 REMARK 3 29 1.3303 - 1.3148 0.84 2690 134 0.1332 0.2071 REMARK 3 30 1.3148 - 1.3000 0.84 2692 138 0.1389 0.1924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3640 REMARK 3 ANGLE : 1.433 4953 REMARK 3 CHIRALITY : 0.088 551 REMARK 3 PLANARITY : 0.008 655 REMARK 3 DIHEDRAL : 13.458 1339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.364 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG3350, 0.1M BIS-TRIS PH REMARK 280 6.0 AND 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY A 42 REMARK 465 PRO A 68 REMARK 465 GLY A 69 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 ILE B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 48 O HOH B 699 1.80 REMARK 500 O HOH A 694 O HOH A 695 1.84 REMARK 500 O HOH B 678 O HOH B 685 1.86 REMARK 500 O HOH A 719 O HOH A 725 1.86 REMARK 500 N ARG B 32 O HOH B 537 1.92 REMARK 500 O HOH A 624 O HOH A 660 1.92 REMARK 500 O HOH A 521 O HOH A 551 1.93 REMARK 500 O HOH A 662 O HOH A 726 1.94 REMARK 500 O HOH A 612 O HOH A 695 1.95 REMARK 500 O HOH A 564 O HOH A 570 1.97 REMARK 500 O HOH B 451 O HOH B 647 1.98 REMARK 500 O HOH B 658 O HOH B 689 2.02 REMARK 500 OD1 ASP A 199 O HOH A 686 2.04 REMARK 500 OD2 ASP A 130 O HOH A 661 2.05 REMARK 500 O HOH B 549 O HOH B 683 2.06 REMARK 500 O HOH B 641 O HOH B 692 2.07 REMARK 500 O HOH A 576 O HOH A 732 2.08 REMARK 500 CB ASP A 199 O HOH A 686 2.08 REMARK 500 N PHE A 70 O HOH A 529 2.08 REMARK 500 O HOH B 520 O HOH B 576 2.09 REMARK 500 O HOH B 527 O HOH B 666 2.09 REMARK 500 OD1 ASP A 96 O HOH A 590 2.09 REMARK 500 N ASP A 43 O HOH A 576 2.12 REMARK 500 O HOH B 580 O HOH B 664 2.12 REMARK 500 O HOH B 503 O HOH B 522 2.12 REMARK 500 O HOH A 599 O HOH A 611 2.13 REMARK 500 O HOH B 609 O HOH B 709 2.15 REMARK 500 O HOH A 587 O HOH A 697 2.15 REMARK 500 O HOH A 553 O HOH A 680 2.16 REMARK 500 OD1 ASP B 96 O HOH B 595 2.16 REMARK 500 O HOH B 642 O HOH B 645 2.16 REMARK 500 OH TYR A 64 O HOH A 540 2.17 REMARK 500 OD1 ASP A 82 O HOH A 528 2.18 REMARK 500 O HOH B 544 O HOH B 643 2.18 REMARK 500 O HOH A 469 O HOH A 626 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 624 O HOH B 627 1455 1.83 REMARK 500 O HOH A 721 O HOH B 695 3655 1.89 REMARK 500 O HOH A 612 O HOH B 685 3655 1.93 REMARK 500 O HOH A 518 O HOH B 666 3555 1.99 REMARK 500 O HOH A 733 O HOH B 705 3655 2.01 REMARK 500 O HOH A 660 O HOH B 603 3655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 141.85 74.67 REMARK 500 ASP B 90 144.41 74.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 99.6 REMARK 620 3 HIS A 189 NE2 101.3 117.2 REMARK 620 4 HOH A 426 O 104.2 115.6 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 103.2 REMARK 620 3 HIS A 250 NE2 86.7 103.2 REMARK 620 4 3S0 A 303 OAX 162.5 94.2 88.3 REMARK 620 5 3S0 A 303 NAR 93.1 159.3 90.2 70.2 REMARK 620 6 HOH A 426 O 79.6 95.9 158.6 99.9 74.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 98.6 REMARK 620 3 HIS B 189 NE2 103.2 117.0 REMARK 620 4 HOH B 419 O 104.5 115.9 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 102.1 REMARK 620 3 HIS B 250 NE2 86.6 104.0 REMARK 620 4 3S0 B 303 OAY 163.8 94.0 88.0 REMARK 620 5 3S0 B 303 NAR 94.0 160.7 87.4 70.5 REMARK 620 6 HOH B 419 O 79.5 95.0 158.4 100.9 77.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S0 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S0 B 303 DBREF 4RL0 A 29 270 UNP C7C422 BLAN1_KLEPN 29 270 DBREF 4RL0 B 29 270 UNP C7C422 BLAN1_KLEPN 29 270 SEQRES 1 A 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR SEQRES 2 A 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU SEQRES 3 A 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET SEQRES 4 A 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL SEQRES 5 A 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP SEQRES 6 A 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS SEQRES 7 A 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR SEQRES 8 A 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU SEQRES 9 A 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER SEQRES 10 A 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN SEQRES 11 A 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO SEQRES 12 A 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR SEQRES 13 A 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY SEQRES 14 A 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE SEQRES 15 A 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP SEQRES 16 A 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE SEQRES 17 A 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER SEQRES 18 A 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR SEQRES 19 A 242 ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR SEQRES 2 B 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU SEQRES 3 B 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET SEQRES 4 B 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL SEQRES 5 B 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP SEQRES 6 B 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS SEQRES 7 B 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR SEQRES 8 B 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU SEQRES 9 B 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER SEQRES 10 B 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN SEQRES 11 B 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO SEQRES 12 B 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR SEQRES 13 B 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY SEQRES 14 B 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE SEQRES 15 B 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP SEQRES 16 B 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE SEQRES 17 B 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER SEQRES 18 B 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR SEQRES 19 B 242 ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET 3S0 A 303 45 HET ZN B 301 1 HET ZN B 302 1 HET 3S0 B 303 45 HETNAM ZN ZINC ION HETNAM 3S0 (2R,5S)-5-[(CARBAMOYLOXY)METHYL]-2-[(R)-CARBOXY{[(2Z)- HETNAM 2 3S0 2-(FURAN-2-YL)-2-(METHOXYIMINO)ACETYL]AMINO}METHYL]-5, HETNAM 3 3S0 6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 3S0 2(C16 H18 N4 O9 S) FORMUL 9 HOH *645(H2 O) HELIX 1 1 THR A 94 ILE A 109 1 16 HELIX 2 2 HIS A 122 GLY A 127 1 6 HELIX 3 3 GLY A 128 ALA A 135 1 8 HELIX 4 4 ALA A 143 ALA A 149 1 7 HELIX 5 5 PRO A 150 GLY A 153 5 4 HELIX 6 6 GLU A 170 ALA A 174 5 5 HELIX 7 7 HIS A 228 PHE A 240 1 13 HELIX 8 8 ARG A 256 LYS A 268 1 13 HELIX 9 9 THR B 94 ILE B 109 1 16 HELIX 10 10 HIS B 122 GLY B 127 1 6 HELIX 11 11 GLY B 128 ALA B 135 1 8 HELIX 12 12 ALA B 143 ALA B 149 1 7 HELIX 13 13 PRO B 150 GLY B 153 5 4 HELIX 14 14 GLU B 170 ALA B 174 5 5 HELIX 15 15 CYS B 208 ILE B 210 5 3 HELIX 16 16 HIS B 228 PHE B 240 1 13 HELIX 17 17 ARG B 256 LYS B 268 1 13 SHEET 1 A 8 GLN A 44 PHE A 46 0 SHEET 2 A 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 A 8 VAL A 58 ASP A 66 -1 O GLN A 60 N ARG A 52 SHEET 4 A 8 ALA A 72 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 A 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80 SHEET 6 A 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 A 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 A 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 B 4 LEU A 180 PHE A 183 0 SHEET 2 B 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 B 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 B 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 C 8 ASP B 43 PHE B 46 0 SHEET 2 C 8 LEU B 49 ALA B 55 -1 O LEU B 49 N PHE B 46 SHEET 3 C 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 C 8 GLY B 71 ASP B 82 -1 O ILE B 79 N TRP B 59 SHEET 5 C 8 ARG B 85 VAL B 89 -1 O LEU B 87 N VAL B 80 SHEET 6 C 8 VAL B 113 VAL B 117 1 O ALA B 114 N VAL B 86 SHEET 7 C 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 C 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 D 4 LEU B 180 PHE B 183 0 SHEET 2 D 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 D 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 D 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.10 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 1.96 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 2.01 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.02 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.35 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.15 LINK ZN ZN A 301 O HOH A 426 1555 1555 2.01 LINK ZN ZN A 302 OAX 3S0 A 303 1555 1555 2.14 LINK ZN ZN A 302 NAR 3S0 A 303 1555 1555 2.36 LINK ZN ZN A 302 O HOH A 426 1555 1555 2.17 LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.08 LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 1.97 LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 2.03 LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 1.98 LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.34 LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.14 LINK ZN ZN B 301 O HOH B 419 1555 1555 2.03 LINK ZN ZN B 302 OAY 3S0 B 303 1555 1555 2.17 LINK ZN ZN B 302 NAR 3S0 B 303 1555 1555 2.32 LINK ZN ZN B 302 O HOH B 419 1555 1555 2.17 SITE 1 AC1 5 HIS A 120 HIS A 122 HIS A 189 3S0 A 303 SITE 2 AC1 5 HOH A 426 SITE 1 AC2 5 ASP A 124 CYS A 208 HIS A 250 3S0 A 303 SITE 2 AC2 5 HOH A 426 SITE 1 AC3 21 ILE A 35 LEU A 65 TRP A 93 HIS A 122 SITE 2 AC3 21 GLN A 123 ASP A 124 GLU A 152 HIS A 189 SITE 3 AC3 21 CYS A 208 LYS A 211 GLY A 219 ASN A 220 SITE 4 AC3 21 HIS A 250 ZN A 301 ZN A 302 HOH A 426 SITE 5 AC3 21 HOH A 563 THR B 34 PRO B 68 GLY B 69 SITE 6 AC3 21 PHE B 70 SITE 1 AC4 5 HIS B 120 HIS B 122 HIS B 189 3S0 B 303 SITE 2 AC4 5 HOH B 419 SITE 1 AC5 5 ASP B 124 CYS B 208 HIS B 250 3S0 B 303 SITE 2 AC5 5 HOH B 419 SITE 1 AC6 19 THR A 34 PHE A 70 HOH A 529 ILE B 35 SITE 2 AC6 19 LEU B 65 TRP B 93 HIS B 122 GLN B 123 SITE 3 AC6 19 ASP B 124 HIS B 189 CYS B 208 LYS B 211 SITE 4 AC6 19 GLY B 219 ASN B 220 HIS B 250 ZN B 301 SITE 5 AC6 19 ZN B 302 HOH B 419 HOH B 592 CRYST1 39.180 78.890 133.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007515 0.00000