HEADER LYASE/LYASE INHIBITOR 18-OCT-14 4RLU TITLE CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- TITLE 2 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 2',4,4'- TITLE 3 TRIHYDROXYCHALCONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (3R)-HYDROXYACYL-ACP DEHYDRATASE SUBUNIT HADA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RV0635; COMPND 5 EC: 4.2.1.59; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: (3R)-HYDROXYACYL-ACP DEHYDRATASE SUBUNIT HADB; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RV0636; COMPND 11 EC: 4.2.1.59; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: HADA, P425_00663, RVBD_0635; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 11 ORGANISM_TAXID: 83332; SOURCE 12 GENE: HADB, P425_00664, RV0636, RVBD_0636; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS DOUBLE HOTDOG FOLD, (3R)-HYDROXYACYL-ACP BINDING, LYASE-LYASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Y.DONG,Z.H.RAO REVDAT 3 20-SEP-23 4RLU 1 REMARK SEQADV REVDAT 2 22-NOV-17 4RLU 1 REMARK REVDAT 1 21-OCT-15 4RLU 0 JRNL AUTH Y.DONG,X.QIU,N.SHAW,Y.XU,Y.SUN,X.LI,J.LI,Z.RAO JRNL TITL MOLECULAR BASIS FOR THE INHIBITION OF BETA-HYDROXYACYL-ACP JRNL TITL 2 DEHYDRATASE HADAB COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS BY JRNL TITL 3 FLAVONOID INHIBITORS. JRNL REF PROTEIN CELL V. 6 504 2015 JRNL REFN ISSN 1674-800X JRNL PMID 26081470 JRNL DOI 10.1007/S13238-015-0181-1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6625 - 4.5696 0.99 2886 129 0.1632 0.1936 REMARK 3 2 4.5696 - 3.6280 0.99 2723 141 0.1627 0.1740 REMARK 3 3 3.6280 - 3.1697 1.00 2687 145 0.1855 0.2259 REMARK 3 4 3.1697 - 2.8800 1.00 2682 140 0.2126 0.2381 REMARK 3 5 2.8800 - 2.6737 1.00 2641 153 0.2132 0.2469 REMARK 3 6 2.6737 - 2.5161 1.00 2629 155 0.2204 0.2572 REMARK 3 7 2.5161 - 2.3901 1.00 2632 151 0.2253 0.2135 REMARK 3 8 2.3901 - 2.2861 1.00 2623 143 0.2242 0.2767 REMARK 3 9 2.2861 - 2.1980 1.00 2652 137 0.2278 0.2589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2384 REMARK 3 ANGLE : 0.711 3230 REMARK 3 CHIRALITY : 0.028 359 REMARK 3 PLANARITY : 0.003 419 REMARK 3 DIHEDRAL : 14.479 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3596 34.9000 -39.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.6357 T22: 0.7037 REMARK 3 T33: 0.6612 T12: -0.2199 REMARK 3 T13: 0.0336 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 5.1918 L22: 2.8798 REMARK 3 L33: 3.8905 L12: 1.5496 REMARK 3 L13: 3.0942 L23: 0.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.2538 S12: 0.4559 S13: 0.3884 REMARK 3 S21: 0.0024 S22: -0.1783 S23: -0.5238 REMARK 3 S31: -0.5800 S32: 1.1284 S33: -0.1060 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1550 21.2074 -32.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.3519 REMARK 3 T33: 0.3049 T12: -0.0178 REMARK 3 T13: -0.0397 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.9757 L22: 2.1622 REMARK 3 L33: 1.3722 L12: 0.2917 REMARK 3 L13: 0.0105 L23: -0.2494 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: 0.0598 S13: 0.0076 REMARK 3 S21: -0.1299 S22: -0.0653 S23: 0.1518 REMARK 3 S31: -0.1426 S32: -0.1240 S33: 0.0544 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3443 15.1586 -19.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.3892 T22: 0.4250 REMARK 3 T33: 0.4040 T12: -0.0688 REMARK 3 T13: 0.0589 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.6767 L22: 2.4060 REMARK 3 L33: 1.6924 L12: -1.6671 REMARK 3 L13: 0.0465 L23: 0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.4156 S12: -0.5042 S13: -0.5034 REMARK 3 S21: 0.5839 S22: -0.2059 S23: 0.3867 REMARK 3 S31: 0.0911 S32: -0.1859 S33: 0.0423 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9183 23.5440 -20.6815 REMARK 3 T TENSOR REMARK 3 T11: 0.3345 T22: 0.5174 REMARK 3 T33: 0.3951 T12: 0.0193 REMARK 3 T13: -0.0115 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 9.8207 L22: 3.0365 REMARK 3 L33: 2.8328 L12: 0.0700 REMARK 3 L13: -0.8329 L23: 1.5533 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.4309 S13: 0.8148 REMARK 3 S21: 0.1866 S22: -0.1595 S23: 0.2367 REMARK 3 S31: -0.3029 S32: -0.5389 S33: 0.1281 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3627 25.1305 -37.1353 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.4213 REMARK 3 T33: 0.3946 T12: -0.0423 REMARK 3 T13: 0.0147 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.3791 L22: 3.5084 REMARK 3 L33: 6.8182 L12: 0.5967 REMARK 3 L13: -4.1281 L23: -2.0413 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: 0.4289 S13: 0.3618 REMARK 3 S21: -0.1157 S22: 0.0990 S23: -0.3771 REMARK 3 S31: -0.4955 S32: 0.0326 S33: -0.1614 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0394 23.1249 -32.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.3942 T22: 0.5377 REMARK 3 T33: 0.4977 T12: -0.0341 REMARK 3 T13: 0.0184 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 3.4127 L22: 2.0513 REMARK 3 L33: 5.5768 L12: -0.0640 REMARK 3 L13: -0.7199 L23: -0.6127 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0556 S13: -0.0923 REMARK 3 S21: -0.1921 S22: 0.0586 S23: -0.4229 REMARK 3 S31: 0.4319 S32: 0.9027 S33: -0.0545 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1905 30.4553 -26.7588 REMARK 3 T TENSOR REMARK 3 T11: 0.3711 T22: 0.4127 REMARK 3 T33: 0.4413 T12: 0.0403 REMARK 3 T13: 0.0350 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 6.0535 L22: 1.3596 REMARK 3 L33: 3.6180 L12: 1.4250 REMARK 3 L13: 0.5528 L23: 0.4494 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.2672 S13: 0.0323 REMARK 3 S21: -0.0565 S22: -0.4398 S23: 0.5402 REMARK 3 S31: -0.5865 S32: -0.4292 S33: 0.4384 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0750 32.6069 -32.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.5050 T22: 0.5447 REMARK 3 T33: 0.5358 T12: -0.1281 REMARK 3 T13: 0.0248 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.6179 L22: 2.4099 REMARK 3 L33: 2.9764 L12: 1.0623 REMARK 3 L13: 0.3083 L23: 0.3196 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.2629 S13: 0.0431 REMARK 3 S21: 0.1097 S22: -0.1471 S23: -0.3425 REMARK 3 S31: -0.3546 S32: 0.6595 S33: 0.1335 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3545 29.6715 -30.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.4124 T22: 0.5896 REMARK 3 T33: 0.4250 T12: -0.0446 REMARK 3 T13: -0.0066 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.1523 L22: 4.4458 REMARK 3 L33: 2.3439 L12: -3.7465 REMARK 3 L13: 1.5001 L23: -1.5024 REMARK 3 S TENSOR REMARK 3 S11: -0.3510 S12: 0.7266 S13: -0.2645 REMARK 3 S21: 0.1754 S22: -0.0908 S23: -0.3037 REMARK 3 S31: -0.0492 S32: 0.8192 S33: 0.3410 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1450 31.0260 -29.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.4552 T22: 0.4045 REMARK 3 T33: 0.3773 T12: -0.0927 REMARK 3 T13: -0.0193 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 8.3819 L22: 5.4885 REMARK 3 L33: 3.5848 L12: -5.3310 REMARK 3 L13: 0.2845 L23: -0.9441 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0616 S13: 0.3295 REMARK 3 S21: 0.1184 S22: -0.1401 S23: -0.3752 REMARK 3 S31: -0.1499 S32: 0.1359 S33: 0.0973 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1535 22.3106 -42.3300 REMARK 3 T TENSOR REMARK 3 T11: 1.1149 T22: 1.4870 REMARK 3 T33: 1.0733 T12: 0.0772 REMARK 3 T13: 0.2619 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.5475 L22: 3.1422 REMARK 3 L33: 0.4993 L12: 0.5629 REMARK 3 L13: 0.8386 L23: -0.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: 0.2555 S13: 0.0525 REMARK 3 S21: 0.1508 S22: -0.0151 S23: -1.3845 REMARK 3 S31: 0.2819 S32: 0.7741 S33: -0.4674 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5665 26.5607 -6.6888 REMARK 3 T TENSOR REMARK 3 T11: 0.4370 T22: 0.7536 REMARK 3 T33: 0.7517 T12: 0.0585 REMARK 3 T13: 0.0295 T23: -0.1181 REMARK 3 L TENSOR REMARK 3 L11: 2.7988 L22: 6.5081 REMARK 3 L33: 4.4337 L12: -1.4307 REMARK 3 L13: -1.2838 L23: 1.2323 REMARK 3 S TENSOR REMARK 3 S11: -0.8354 S12: -1.6445 S13: 1.1531 REMARK 3 S21: 0.4281 S22: 0.6062 S23: 1.1554 REMARK 3 S31: -0.5468 S32: -0.9501 S33: -0.0384 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5862 22.6338 -1.4093 REMARK 3 T TENSOR REMARK 3 T11: 0.3776 T22: 0.7845 REMARK 3 T33: 0.4694 T12: -0.0916 REMARK 3 T13: 0.0007 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 4.1120 L22: 4.3043 REMARK 3 L33: 2.4774 L12: -0.9532 REMARK 3 L13: 0.2723 L23: -0.3658 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: -1.1524 S13: 0.3144 REMARK 3 S21: 1.0487 S22: -0.3272 S23: 0.0215 REMARK 3 S31: 0.1131 S32: 0.0276 S33: 0.3163 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7111 12.5899 -24.7264 REMARK 3 T TENSOR REMARK 3 T11: 0.3048 T22: 0.3947 REMARK 3 T33: 0.3955 T12: 0.0066 REMARK 3 T13: -0.0335 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.4740 L22: 1.5974 REMARK 3 L33: 2.9824 L12: 0.5685 REMARK 3 L13: 0.5563 L23: 1.0193 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0350 S13: -0.2305 REMARK 3 S21: 0.0116 S22: 0.0952 S23: -0.2234 REMARK 3 S31: 0.1382 S32: 0.2868 S33: -0.1238 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4876 6.9720 -22.5965 REMARK 3 T TENSOR REMARK 3 T11: 0.4141 T22: 0.5818 REMARK 3 T33: 0.4687 T12: 0.1020 REMARK 3 T13: -0.1027 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 3.1596 L22: 9.7058 REMARK 3 L33: 4.1509 L12: 0.9266 REMARK 3 L13: 0.6364 L23: 3.0881 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.1244 S13: -0.5378 REMARK 3 S21: 0.0447 S22: 0.2999 S23: -0.5134 REMARK 3 S31: 0.3110 S32: 0.5031 S33: -0.3322 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2704 18.7195 -8.5945 REMARK 3 T TENSOR REMARK 3 T11: 0.3403 T22: 0.6875 REMARK 3 T33: 0.4258 T12: -0.0002 REMARK 3 T13: -0.0557 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.5475 L22: 9.4377 REMARK 3 L33: 4.5472 L12: -0.7802 REMARK 3 L13: -0.4121 L23: 4.9090 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.6542 S13: -0.1307 REMARK 3 S21: 0.7773 S22: 0.1984 S23: -0.6790 REMARK 3 S31: 0.2617 S32: 0.4064 S33: -0.3279 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0092 27.4974 -8.1666 REMARK 3 T TENSOR REMARK 3 T11: 0.4567 T22: 0.6720 REMARK 3 T33: 0.3541 T12: -0.0396 REMARK 3 T13: -0.0226 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 3.5612 L22: 0.7405 REMARK 3 L33: 3.4023 L12: 0.0133 REMARK 3 L13: 0.4375 L23: -0.9170 REMARK 3 S TENSOR REMARK 3 S11: 0.1978 S12: -0.5123 S13: 0.5084 REMARK 3 S21: 0.0106 S22: -0.1648 S23: -0.1671 REMARK 3 S31: -0.5647 S32: 0.3401 S33: -0.1086 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5672 14.4392 -15.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.4129 T22: 0.6830 REMARK 3 T33: 0.4824 T12: 0.0197 REMARK 3 T13: -0.0666 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.4640 L22: 1.9852 REMARK 3 L33: 2.5857 L12: 0.3125 REMARK 3 L13: -0.8843 L23: -0.3718 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.1577 S13: 0.0574 REMARK 3 S21: 0.4035 S22: 0.0033 S23: -0.4166 REMARK 3 S31: 0.2441 S32: 0.5722 S33: -0.0638 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2132 28.7496 -10.7724 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.6294 REMARK 3 T33: 0.4805 T12: -0.0337 REMARK 3 T13: -0.0402 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 7.3940 L22: 4.0902 REMARK 3 L33: 5.2385 L12: -3.6713 REMARK 3 L13: -2.6465 L23: 2.2653 REMARK 3 S TENSOR REMARK 3 S11: 0.1369 S12: -0.3851 S13: 0.5978 REMARK 3 S21: -0.2978 S22: -0.1029 S23: -0.1151 REMARK 3 S31: -0.5097 S32: -0.4402 S33: -0.0788 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.198 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4RLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 26% W/V PEG4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.75450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.18800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.18800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.37725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.18800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.18800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.13175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.18800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.18800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.37725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.18800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.18800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.13175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.75450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -70.75450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 147 REMARK 465 GLU A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 90.18 -67.13 REMARK 500 PRO A 15 26.85 -77.46 REMARK 500 ALA A 80 95.56 -68.53 REMARK 500 SER B 0 43.69 -151.27 REMARK 500 ASP B 76 113.02 -168.42 REMARK 500 LYS B 98 -56.40 -128.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 4RLT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH FISETIN REMARK 900 RELATED ID: 4RLW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH BUTEIN DBREF 4RLU A 1 158 UNP I6Y8B9 I6Y8B9_MYCTU 1 158 DBREF 4RLU B 1 142 UNP I6WYY7 I6WYY7_MYCTU 1 142 SEQADV 4RLU VAL A 1 UNP I6Y8B9 MET 1 CONFLICT SEQADV 4RLU GLY B -4 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLU PRO B -3 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLU LEU B -2 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLU GLY B -1 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLU SER B 0 UNP I6WYY7 EXPRESSION TAG SEQRES 1 A 158 VAL ALA LEU SER ALA ASP ILE VAL GLY MET HIS TYR ARG SEQRES 2 A 158 TYR PRO ASP HIS TYR GLU VAL GLU ARG GLU LYS ILE ARG SEQRES 3 A 158 GLU TYR ALA VAL ALA VAL GLN ASN ASP ASP ALA TRP TYR SEQRES 4 A 158 PHE GLU GLU ASP GLY ALA ALA GLU LEU GLY TYR LYS GLY SEQRES 5 A 158 LEU LEU ALA PRO LEU THR PHE ILE CYS VAL PHE GLY TYR SEQRES 6 A 158 LYS ALA GLN ALA ALA PHE PHE LYS HIS ALA ASN ILE ALA SEQRES 7 A 158 THR ALA GLU ALA GLN ILE VAL GLN VAL ASP GLN VAL LEU SEQRES 8 A 158 LYS PHE GLU LYS PRO ILE VAL ALA GLY ASP LYS LEU TYR SEQRES 9 A 158 CYS ASP VAL TYR VAL ASP SER VAL ARG GLU ALA HIS GLY SEQRES 10 A 158 THR GLN ILE ILE VAL THR LYS ASN ILE VAL THR ASN GLU SEQRES 11 A 158 GLU GLY ASP LEU VAL GLN GLU THR TYR THR THR LEU ALA SEQRES 12 A 158 GLY ARG ALA GLY GLU ASP GLY GLU GLY PHE SER ASP GLY SEQRES 13 A 158 ALA ALA SEQRES 1 B 147 GLY PRO LEU GLY SER MET ALA LEU ARG GLU PHE SER SER SEQRES 2 B 147 VAL LYS VAL GLY ASP GLN LEU PRO GLU LYS THR TYR PRO SEQRES 3 B 147 LEU THR ARG GLN ASP LEU VAL ASN TYR ALA GLY VAL SER SEQRES 4 B 147 GLY ASP LEU ASN PRO ILE HIS TRP ASP ASP GLU ILE ALA SEQRES 5 B 147 LYS VAL VAL GLY LEU ASP THR ALA ILE ALA HIS GLY MET SEQRES 6 B 147 LEU THR MET GLY ILE GLY GLY GLY TYR VAL THR SER TRP SEQRES 7 B 147 VAL GLY ASP PRO GLY ALA VAL THR GLU TYR ASN VAL ARG SEQRES 8 B 147 PHE THR ALA VAL VAL PRO VAL PRO ASN ASP GLY LYS GLY SEQRES 9 B 147 ALA GLU LEU VAL PHE ASN GLY ARG VAL LYS SER VAL ASP SEQRES 10 B 147 PRO GLU SER LYS SER VAL THR ILE ALA LEU THR ALA THR SEQRES 11 B 147 THR GLY GLY LYS LYS ILE PHE GLY ARG ALA ILE ALA SER SEQRES 12 B 147 ALA LYS LEU ALA HET HCC A 201 19 HET PGE A 202 10 HET PGE A 203 10 HET GOL A 204 6 HETNAM HCC 2',4,4'-TRIHYDROXYCHALCONE HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HCC C15 H12 O4 FORMUL 4 PGE 2(C6 H14 O4) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *145(H2 O) HELIX 1 1 SER A 4 VAL A 8 5 5 HELIX 2 2 GLU A 21 VAL A 32 1 12 HELIX 3 3 ASP A 36 PHE A 40 5 5 HELIX 4 4 GLU A 41 LEU A 48 1 8 HELIX 5 5 ILE A 60 ALA A 75 1 16 HELIX 6 6 GLU B 5 VAL B 9 5 5 HELIX 7 7 THR B 23 GLY B 35 1 13 HELIX 8 8 ASN B 38 TRP B 42 5 5 HELIX 9 9 ASP B 43 VAL B 50 1 8 HELIX 10 10 HIS B 58 GLY B 75 1 18 HELIX 11 11 ASP B 76 GLY B 78 5 3 SHEET 1 A10 HIS A 11 ARG A 13 0 SHEET 2 A10 LYS A 102 ALA A 115 -1 O VAL A 107 N TYR A 12 SHEET 3 A10 THR A 118 ASN A 129 -1 O THR A 128 N TYR A 104 SHEET 4 A10 LEU A 134 ARG A 145 -1 O VAL A 135 N VAL A 127 SHEET 5 A10 ILE A 84 PHE A 93 -1 N VAL A 85 O ALA A 143 SHEET 6 A10 VAL B 80 PHE B 87 -1 O VAL B 85 N GLN A 89 SHEET 7 A10 PHE B 132 LYS B 140 -1 O SER B 138 N THR B 81 SHEET 8 A10 SER B 117 THR B 126 -1 N ILE B 120 O ALA B 137 SHEET 9 A10 ALA B 100 ASP B 112 -1 N VAL B 103 O THR B 125 SHEET 10 A10 LYS B 18 LEU B 22 -1 N LYS B 18 O PHE B 104 SHEET 1 B 9 TYR A 18 GLU A 19 0 SHEET 2 B 9 LYS A 102 ALA A 115 -1 O LEU A 103 N TYR A 18 SHEET 3 B 9 THR A 118 ASN A 129 -1 O THR A 128 N TYR A 104 SHEET 4 B 9 LEU A 134 ARG A 145 -1 O VAL A 135 N VAL A 127 SHEET 5 B 9 ILE A 84 PHE A 93 -1 N VAL A 85 O ALA A 143 SHEET 6 B 9 VAL B 80 PHE B 87 -1 O VAL B 85 N GLN A 89 SHEET 7 B 9 PHE B 132 LYS B 140 -1 O SER B 138 N THR B 81 SHEET 8 B 9 SER B 117 THR B 126 -1 N ILE B 120 O ALA B 137 SHEET 9 B 9 LYS B 129 LYS B 130 -1 O LYS B 129 N THR B 126 SHEET 1 C 2 ILE A 77 THR A 79 0 SHEET 2 C 2 PHE A 153 ASP A 155 -1 O SER A 154 N ALA A 78 SITE 1 AC1 11 CYS A 61 GLY A 64 TYR A 65 GLN A 68 SITE 2 AC1 11 ILE A 84 GLN A 86 GLN A 89 ASN A 125 SITE 3 AC1 11 THR A 138 THR A 140 MET B 60 SITE 1 AC2 3 GLY A 49 HOH A 333 SER B 0 SITE 1 AC3 2 VAL A 109 LYS A 124 SITE 1 AC4 9 ALA A 55 PRO A 56 LEU A 57 PHE A 93 SITE 2 AC4 9 PRO A 96 ILE A 97 HOH A 303 HOH A 374 SITE 3 AC4 9 PRO B 77 CRYST1 82.376 82.376 141.509 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007067 0.00000