HEADER LYASE/LYASE INHIBITOR 18-OCT-14 4RLW TITLE CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- TITLE 2 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH BUTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: (3R)-HYDROXYACYL-ACP DEHYDRATASE SUBUNIT HADA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RV0635; COMPND 5 EC: 4.2.1.59; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: (3R)-HYDROXYACYL-ACP DEHYDRATASE SUBUNIT HADB; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RV0636; COMPND 11 EC: 4.2.1.59; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: HADA, P425_00663, RVBD_0635; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 11 ORGANISM_TAXID: 83332; SOURCE 12 GENE: HADB, P425_00664, RV0636, RVBD_0636; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS DOUBLE HOTDOG FOLD, (3R)-HYDROXYACYL-ACP BINDING, LYASE, LYASE-LYASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Y.DONG,Z.H.RAO REVDAT 3 20-SEP-23 4RLW 1 REMARK SEQADV HETSYN REVDAT 2 22-NOV-17 4RLW 1 REMARK REVDAT 1 21-OCT-15 4RLW 0 JRNL AUTH Y.DONG,X.QIU,N.SHAW,Y.XU,Y.SUN,X.LI,J.LI,Z.RAO JRNL TITL MOLECULAR BASIS FOR THE INHIBITION OF BETA-HYDROXYACYL-ACP JRNL TITL 2 DEHYDRATASE HADAB COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS BY JRNL TITL 3 FLAVONOID INHIBITORS. JRNL REF PROTEIN CELL V. 6 504 2015 JRNL REFN ISSN 1674-800X JRNL PMID 26081470 JRNL DOI 10.1007/S13238-015-0181-1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7860 - 4.5652 0.99 2869 145 0.1510 0.1714 REMARK 3 2 4.5652 - 3.6243 1.00 2710 153 0.1423 0.1773 REMARK 3 3 3.6243 - 3.1664 1.00 2696 146 0.1664 0.2005 REMARK 3 4 3.1664 - 2.8769 1.00 2651 164 0.1806 0.2226 REMARK 3 5 2.8769 - 2.6708 1.00 2644 146 0.1747 0.2048 REMARK 3 6 2.6708 - 2.5133 1.00 2647 143 0.1790 0.2077 REMARK 3 7 2.5133 - 2.3875 1.00 2643 133 0.1819 0.2154 REMARK 3 8 2.3875 - 2.2836 1.00 2646 124 0.1853 0.2147 REMARK 3 9 2.2836 - 2.1960 1.00 2638 142 0.1967 0.2487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2385 REMARK 3 ANGLE : 1.328 3240 REMARK 3 CHIRALITY : 0.057 360 REMARK 3 PLANARITY : 0.008 422 REMARK 3 DIHEDRAL : 14.492 850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4176 35.0130 -39.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.4977 T22: 0.6696 REMARK 3 T33: 0.5185 T12: -0.1140 REMARK 3 T13: 0.0327 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 0.7742 L22: 0.7127 REMARK 3 L33: 0.3991 L12: -0.5825 REMARK 3 L13: 0.3318 L23: 0.0465 REMARK 3 S TENSOR REMARK 3 S11: 0.6182 S12: 0.6512 S13: -0.0826 REMARK 3 S21: -0.1300 S22: -0.4707 S23: -0.3557 REMARK 3 S31: -0.2313 S32: 1.0577 S33: 0.0608 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4691 18.8877 -27.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.2383 REMARK 3 T33: 0.2036 T12: -0.0074 REMARK 3 T13: -0.0044 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.1877 L22: 1.4555 REMARK 3 L33: 1.4753 L12: 0.1956 REMARK 3 L13: 0.1601 L23: 0.0768 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.1843 S13: -0.0600 REMARK 3 S21: 0.0218 S22: -0.0553 S23: 0.1885 REMARK 3 S31: -0.0189 S32: -0.1125 S33: 0.1340 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7801 23.5283 -20.5352 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.4771 REMARK 3 T33: 0.3082 T12: -0.0148 REMARK 3 T13: 0.0185 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 4.2416 L22: 1.5569 REMARK 3 L33: 0.5802 L12: -0.0310 REMARK 3 L13: 0.1298 L23: 0.5475 REMARK 3 S TENSOR REMARK 3 S11: 0.3592 S12: -0.8044 S13: 0.4542 REMARK 3 S21: 0.1564 S22: -0.3378 S23: 0.2209 REMARK 3 S31: -0.2220 S32: -0.2752 S33: -0.0152 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2461 25.0722 -36.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.2856 T22: 0.3217 REMARK 3 T33: 0.2788 T12: -0.0135 REMARK 3 T13: 0.0446 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.4536 L22: 1.7478 REMARK 3 L33: 3.5306 L12: 0.5892 REMARK 3 L13: -2.0381 L23: -1.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.1432 S12: -0.0169 S13: 0.2206 REMARK 3 S21: -0.1655 S22: -0.1144 S23: -0.1943 REMARK 3 S31: -0.1139 S32: 0.4879 S33: 0.1673 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5056 27.8816 -31.0398 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.3230 REMARK 3 T33: 0.2853 T12: -0.0395 REMARK 3 T13: 0.0052 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.2405 L22: 2.0141 REMARK 3 L33: 2.1222 L12: 0.7388 REMARK 3 L13: 1.1424 L23: -0.0767 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.0138 S13: 0.0711 REMARK 3 S21: -0.0378 S22: -0.0817 S23: -0.2888 REMARK 3 S31: -0.2215 S32: 0.3724 S33: 0.0158 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9725 29.9361 -30.6784 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.4093 REMARK 3 T33: 0.2965 T12: -0.0153 REMARK 3 T13: -0.0083 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 5.8775 L22: 2.3317 REMARK 3 L33: 1.0989 L12: -1.8489 REMARK 3 L13: 0.4351 L23: -1.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.3609 S13: 0.0815 REMARK 3 S21: -0.0170 S22: -0.2093 S23: -0.3881 REMARK 3 S31: -0.1091 S32: 0.4212 S33: 0.1502 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1944 30.5079 -29.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.3426 T22: 0.3646 REMARK 3 T33: 0.2428 T12: -0.0533 REMARK 3 T13: 0.0020 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.1102 L22: 3.2864 REMARK 3 L33: 3.3884 L12: -2.1579 REMARK 3 L13: -0.2405 L23: -0.4571 REMARK 3 S TENSOR REMARK 3 S11: 0.2942 S12: 0.2580 S13: 0.0072 REMARK 3 S21: -0.1955 S22: -0.3582 S23: -0.2391 REMARK 3 S31: -0.3018 S32: 0.2835 S33: 0.0945 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5587 23.5231 -42.2414 REMARK 3 T TENSOR REMARK 3 T11: 0.7834 T22: 1.8188 REMARK 3 T33: 0.7310 T12: 0.1525 REMARK 3 T13: 0.1446 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.2898 L22: 3.3445 REMARK 3 L33: 1.7421 L12: 0.3659 REMARK 3 L13: -1.0023 L23: -0.5579 REMARK 3 S TENSOR REMARK 3 S11: -0.6475 S12: 0.3770 S13: 0.0257 REMARK 3 S21: -0.2273 S22: 0.2626 S23: -0.8057 REMARK 3 S31: -0.5880 S32: 0.7108 S33: 0.5919 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3850 26.5890 -6.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.6698 REMARK 3 T33: 0.6254 T12: 0.0181 REMARK 3 T13: 0.0431 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 7.6868 L22: 3.1481 REMARK 3 L33: 4.4546 L12: 1.0219 REMARK 3 L13: 0.2265 L23: 0.9706 REMARK 3 S TENSOR REMARK 3 S11: -0.4646 S12: -1.1099 S13: 0.8203 REMARK 3 S21: 0.1783 S22: 0.5572 S23: 1.1808 REMARK 3 S31: -0.3376 S32: -0.9724 S33: 0.4162 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4742 22.5684 -1.1938 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.6204 REMARK 3 T33: 0.3022 T12: -0.0990 REMARK 3 T13: 0.0109 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.0978 L22: 3.7190 REMARK 3 L33: 3.3085 L12: -0.2357 REMARK 3 L13: -0.2106 L23: 0.9194 REMARK 3 S TENSOR REMARK 3 S11: 0.1754 S12: -1.0101 S13: 0.1693 REMARK 3 S21: 0.7181 S22: -0.3811 S23: -0.1255 REMARK 3 S31: 0.1167 S32: 0.0243 S33: 0.1434 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5160 7.0583 -29.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.3660 REMARK 3 T33: 0.4024 T12: 0.0569 REMARK 3 T13: -0.0312 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.6499 L22: 1.6805 REMARK 3 L33: 2.1951 L12: 0.9013 REMARK 3 L13: 0.8612 L23: 0.5897 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: 0.0055 S13: -0.3269 REMARK 3 S21: 0.0594 S22: 0.1528 S23: -0.4570 REMARK 3 S31: 0.2805 S32: 0.4092 S33: -0.1927 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6639 21.4805 -16.4086 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.3558 REMARK 3 T33: 0.2759 T12: -0.0242 REMARK 3 T13: -0.0317 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.8545 L22: 1.1636 REMARK 3 L33: 1.0988 L12: 0.4045 REMARK 3 L13: 0.6806 L23: 0.7767 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.3720 S13: 0.0620 REMARK 3 S21: 0.0058 S22: -0.0566 S23: 0.0530 REMARK 3 S31: -0.0700 S32: 0.0931 S33: 0.0070 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5701 6.7088 -22.4022 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.4135 REMARK 3 T33: 0.4037 T12: 0.0998 REMARK 3 T13: -0.1004 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.7362 L22: 2.1193 REMARK 3 L33: 2.6156 L12: -0.5594 REMARK 3 L13: -0.5922 L23: 1.1040 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.1151 S13: -0.3997 REMARK 3 S21: -0.3654 S22: 0.3217 S23: -0.3168 REMARK 3 S31: 0.4340 S32: 0.6338 S33: -0.1013 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1660 18.6961 -8.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.5921 REMARK 3 T33: 0.3239 T12: -0.0239 REMARK 3 T13: -0.0507 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.9458 L22: 4.2018 REMARK 3 L33: 2.5215 L12: -0.0830 REMARK 3 L13: -0.1882 L23: 2.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.4133 S13: -0.0350 REMARK 3 S21: 0.4868 S22: 0.1010 S23: -0.2816 REMARK 3 S31: 0.0846 S32: 0.2956 S33: -0.0396 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8531 27.4764 -8.0222 REMARK 3 T TENSOR REMARK 3 T11: 0.3064 T22: 0.5262 REMARK 3 T33: 0.2716 T12: -0.0102 REMARK 3 T13: -0.0374 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.4048 L22: 3.6070 REMARK 3 L33: 2.9456 L12: -1.8451 REMARK 3 L13: -0.2787 L23: 0.6231 REMARK 3 S TENSOR REMARK 3 S11: 0.1802 S12: -0.2241 S13: 0.3897 REMARK 3 S21: -0.1183 S22: -0.1769 S23: -0.1421 REMARK 3 S31: -0.3453 S32: 0.1877 S33: -0.0260 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1762 20.5457 -13.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.4565 REMARK 3 T33: 0.2988 T12: -0.0435 REMARK 3 T13: -0.0200 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.0275 L22: 0.4591 REMARK 3 L33: 2.2045 L12: 0.0078 REMARK 3 L13: 0.2513 L23: 0.2031 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: -0.0079 S13: -0.0513 REMARK 3 S21: 0.0766 S22: -0.0506 S23: -0.1877 REMARK 3 S31: 0.1460 S32: 0.2655 S33: 0.0861 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.196 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4RLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 26% W/V PEG4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.40050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.18650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.20025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.18650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.60075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.18650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.18650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.20025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.18650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.18650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.60075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.40050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -70.40050 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 147 REMARK 465 GLU A 148 REMARK 465 ASP A 149 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 0 43.17 -155.01 REMARK 500 ASP B 76 117.01 -174.05 REMARK 500 LYS B 98 -59.07 -122.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BUN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 4RLT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH FISETIN REMARK 900 RELATED ID: 4RLU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACP DEHYDRATASE HADAB HETERO- REMARK 900 DIMER FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 2',4,4'- REMARK 900 TRIHYDROXYCHALCONE DBREF 4RLW A 1 158 UNP I6Y8B9 I6Y8B9_MYCTU 1 158 DBREF 4RLW B 1 142 UNP I6WYY7 I6WYY7_MYCTU 1 142 SEQADV 4RLW VAL A 1 UNP I6Y8B9 MET 1 CONFLICT SEQADV 4RLW GLY B -4 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLW PRO B -3 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLW LEU B -2 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLW GLY B -1 UNP I6WYY7 EXPRESSION TAG SEQADV 4RLW SER B 0 UNP I6WYY7 EXPRESSION TAG SEQRES 1 A 158 VAL ALA LEU SER ALA ASP ILE VAL GLY MET HIS TYR ARG SEQRES 2 A 158 TYR PRO ASP HIS TYR GLU VAL GLU ARG GLU LYS ILE ARG SEQRES 3 A 158 GLU TYR ALA VAL ALA VAL GLN ASN ASP ASP ALA TRP TYR SEQRES 4 A 158 PHE GLU GLU ASP GLY ALA ALA GLU LEU GLY TYR LYS GLY SEQRES 5 A 158 LEU LEU ALA PRO LEU THR PHE ILE CYS VAL PHE GLY TYR SEQRES 6 A 158 LYS ALA GLN ALA ALA PHE PHE LYS HIS ALA ASN ILE ALA SEQRES 7 A 158 THR ALA GLU ALA GLN ILE VAL GLN VAL ASP GLN VAL LEU SEQRES 8 A 158 LYS PHE GLU LYS PRO ILE VAL ALA GLY ASP LYS LEU TYR SEQRES 9 A 158 CYS ASP VAL TYR VAL ASP SER VAL ARG GLU ALA HIS GLY SEQRES 10 A 158 THR GLN ILE ILE VAL THR LYS ASN ILE VAL THR ASN GLU SEQRES 11 A 158 GLU GLY ASP LEU VAL GLN GLU THR TYR THR THR LEU ALA SEQRES 12 A 158 GLY ARG ALA GLY GLU ASP GLY GLU GLY PHE SER ASP GLY SEQRES 13 A 158 ALA ALA SEQRES 1 B 147 GLY PRO LEU GLY SER MET ALA LEU ARG GLU PHE SER SER SEQRES 2 B 147 VAL LYS VAL GLY ASP GLN LEU PRO GLU LYS THR TYR PRO SEQRES 3 B 147 LEU THR ARG GLN ASP LEU VAL ASN TYR ALA GLY VAL SER SEQRES 4 B 147 GLY ASP LEU ASN PRO ILE HIS TRP ASP ASP GLU ILE ALA SEQRES 5 B 147 LYS VAL VAL GLY LEU ASP THR ALA ILE ALA HIS GLY MET SEQRES 6 B 147 LEU THR MET GLY ILE GLY GLY GLY TYR VAL THR SER TRP SEQRES 7 B 147 VAL GLY ASP PRO GLY ALA VAL THR GLU TYR ASN VAL ARG SEQRES 8 B 147 PHE THR ALA VAL VAL PRO VAL PRO ASN ASP GLY LYS GLY SEQRES 9 B 147 ALA GLU LEU VAL PHE ASN GLY ARG VAL LYS SER VAL ASP SEQRES 10 B 147 PRO GLU SER LYS SER VAL THR ILE ALA LEU THR ALA THR SEQRES 11 B 147 THR GLY GLY LYS LYS ILE PHE GLY ARG ALA ILE ALA SER SEQRES 12 B 147 ALA LYS LEU ALA HET BUN A 201 20 HET GOL A 202 6 HET GOL B 201 6 HETNAM BUN (2E)-1-(2,4-DIHYDROXYPHENYL)-3-(3,4-DIHYDROXYPHENYL) HETNAM 2 BUN PROP-2-EN-1-ONE HETNAM GOL GLYCEROL HETSYN BUN 2',3,4,4'-TETRAHYDROXYCHALCONE; BUTEIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BUN C15 H12 O5 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *173(H2 O) HELIX 1 1 SER A 4 VAL A 8 5 5 HELIX 2 2 GLU A 21 VAL A 32 1 12 HELIX 3 3 ASP A 36 PHE A 40 5 5 HELIX 4 4 GLU A 41 LEU A 48 1 8 HELIX 5 5 ILE A 60 ALA A 75 1 16 HELIX 6 6 GLU B 5 VAL B 9 5 5 HELIX 7 7 THR B 23 GLY B 35 1 13 HELIX 8 8 ASN B 38 TRP B 42 5 5 HELIX 9 9 ASP B 43 VAL B 50 1 8 HELIX 10 10 HIS B 58 GLY B 75 1 18 HELIX 11 11 ASP B 76 GLY B 78 5 3 SHEET 1 A10 HIS A 11 ARG A 13 0 SHEET 2 A10 LYS A 102 ALA A 115 -1 O VAL A 107 N TYR A 12 SHEET 3 A10 THR A 118 ASN A 129 -1 O ILE A 120 N ARG A 113 SHEET 4 A10 LEU A 134 ARG A 145 -1 O VAL A 135 N VAL A 127 SHEET 5 A10 ILE A 84 PHE A 93 -1 N VAL A 90 O TYR A 139 SHEET 6 A10 VAL B 80 PHE B 87 -1 O VAL B 85 N GLN A 89 SHEET 7 A10 PHE B 132 LYS B 140 -1 O SER B 138 N THR B 81 SHEET 8 A10 SER B 117 THR B 126 -1 N ILE B 120 O ALA B 137 SHEET 9 A10 ALA B 100 ASP B 112 -1 N LYS B 109 O THR B 119 SHEET 10 A10 LYS B 18 LEU B 22 -1 N LYS B 18 O PHE B 104 SHEET 1 B 9 TYR A 18 GLU A 19 0 SHEET 2 B 9 LYS A 102 ALA A 115 -1 O LEU A 103 N TYR A 18 SHEET 3 B 9 THR A 118 ASN A 129 -1 O ILE A 120 N ARG A 113 SHEET 4 B 9 LEU A 134 ARG A 145 -1 O VAL A 135 N VAL A 127 SHEET 5 B 9 ILE A 84 PHE A 93 -1 N VAL A 90 O TYR A 139 SHEET 6 B 9 VAL B 80 PHE B 87 -1 O VAL B 85 N GLN A 89 SHEET 7 B 9 PHE B 132 LYS B 140 -1 O SER B 138 N THR B 81 SHEET 8 B 9 SER B 117 THR B 126 -1 N ILE B 120 O ALA B 137 SHEET 9 B 9 LYS B 129 LYS B 130 -1 O LYS B 129 N THR B 126 SHEET 1 C 2 ILE A 77 THR A 79 0 SHEET 2 C 2 PHE A 153 ASP A 155 -1 O SER A 154 N ALA A 78 SITE 1 AC1 10 CYS A 61 GLY A 64 GLN A 68 GLN A 86 SITE 2 AC1 10 GLN A 89 ASN A 125 THR A 138 THR A 140 SITE 3 AC1 10 HOH A 335 MET B 60 SITE 1 AC2 9 ALA A 55 PRO A 56 LEU A 57 PHE A 93 SITE 2 AC2 9 PRO A 96 ILE A 97 HOH A 309 HOH A 321 SITE 3 AC2 9 HOH A 324 SITE 1 AC3 9 ARG A 13 TYR A 104 THR A 128 ASN A 129 SITE 2 AC3 9 GLU A 130 VAL B 11 ARG B 107 VAL B 108 SITE 3 AC3 9 LYS B 109 CRYST1 82.373 82.373 140.801 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000