data_4RME # _entry.id 4RME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB087525 PDB 4RME WWPDB D_1000087525 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OAP . unspecified PDB 4K4J . unspecified PDB 4RMC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RME _pdbx_database_status.recvd_initial_deposition_date 2014-10-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xia, G.' 1 'Muccio, D.D.' 2 # _citation.id primary _citation.title 'Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 58 _citation.page_first 7763 _citation.page_last 7774 _citation.year 2015 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26331194 _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.5b00829 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Atigadda, V.R.' 1 primary 'Xia, G.' 2 primary 'Deshpande, A.' 3 primary 'Wu, L.' 4 primary 'Kedishvili, N.' 5 primary 'Smith, C.D.' 6 primary 'Krontiras, H.' 7 primary 'Bland, K.I.' 8 primary 'Grubbs, C.J.' 9 primary 'Brouillette, W.J.' 10 primary 'Muccio, D.D.' 11 # _cell.entry_id 4RME _cell.length_a 65.971 _cell.length_b 65.971 _cell.length_c 112.347 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RME _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Retinoic acid receptor RXR-alpha' 26395.598 1 ? ? 'ligand binding domain 228-458' ? 2 polymer syn 'Nuclear receptor coactivator 2' 1579.866 1 ? ? 'coactivator peptide residues 686-698' ? 3 non-polymer syn '(2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid' 356.541 1 ? ? ? ? 4 water nat water 18.015 109 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Nuclear receptor subfamily 2 group B member 1, Retinoid X receptor alpha' 2 'NCoA-2, Class E basic helix-loop-helix protein 75, bHLHe75, Transcriptional intermediary factor 2, hTIF2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT ; ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT ; A ? 2 'polypeptide(L)' no no KHKILHRLLQDSS KHKILHRLLQDSS B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASP n 1 3 MET n 1 4 PRO n 1 5 VAL n 1 6 GLU n 1 7 ARG n 1 8 ILE n 1 9 LEU n 1 10 GLU n 1 11 ALA n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 VAL n 1 16 GLU n 1 17 PRO n 1 18 LYS n 1 19 THR n 1 20 GLU n 1 21 THR n 1 22 TYR n 1 23 VAL n 1 24 GLU n 1 25 ALA n 1 26 ASN n 1 27 MET n 1 28 GLY n 1 29 LEU n 1 30 ASN n 1 31 PRO n 1 32 SER n 1 33 SER n 1 34 PRO n 1 35 ASN n 1 36 ASP n 1 37 PRO n 1 38 VAL n 1 39 THR n 1 40 ASN n 1 41 ILE n 1 42 CYS n 1 43 GLN n 1 44 ALA n 1 45 ALA n 1 46 ASP n 1 47 LYS n 1 48 GLN n 1 49 LEU n 1 50 PHE n 1 51 THR n 1 52 LEU n 1 53 VAL n 1 54 GLU n 1 55 TRP n 1 56 ALA n 1 57 LYS n 1 58 ARG n 1 59 ILE n 1 60 PRO n 1 61 HIS n 1 62 PHE n 1 63 SER n 1 64 GLU n 1 65 LEU n 1 66 PRO n 1 67 LEU n 1 68 ASP n 1 69 ASP n 1 70 GLN n 1 71 VAL n 1 72 ILE n 1 73 LEU n 1 74 LEU n 1 75 ARG n 1 76 ALA n 1 77 GLY n 1 78 TRP n 1 79 ASN n 1 80 GLU n 1 81 LEU n 1 82 LEU n 1 83 ILE n 1 84 ALA n 1 85 SER n 1 86 PHE n 1 87 SER n 1 88 HIS n 1 89 ARG n 1 90 SER n 1 91 ILE n 1 92 ALA n 1 93 VAL n 1 94 LYS n 1 95 ASP n 1 96 GLY n 1 97 ILE n 1 98 LEU n 1 99 LEU n 1 100 ALA n 1 101 THR n 1 102 GLY n 1 103 LEU n 1 104 HIS n 1 105 VAL n 1 106 HIS n 1 107 ARG n 1 108 ASN n 1 109 SER n 1 110 ALA n 1 111 HIS n 1 112 SER n 1 113 ALA n 1 114 GLY n 1 115 VAL n 1 116 GLY n 1 117 ALA n 1 118 ILE n 1 119 PHE n 1 120 ASP n 1 121 ARG n 1 122 VAL n 1 123 LEU n 1 124 THR n 1 125 GLU n 1 126 LEU n 1 127 VAL n 1 128 SER n 1 129 LYS n 1 130 MET n 1 131 ARG n 1 132 ASP n 1 133 MET n 1 134 GLN n 1 135 MET n 1 136 ASP n 1 137 LYS n 1 138 THR n 1 139 GLU n 1 140 LEU n 1 141 GLY n 1 142 CYS n 1 143 LEU n 1 144 ARG n 1 145 ALA n 1 146 ILE n 1 147 VAL n 1 148 LEU n 1 149 PHE n 1 150 ASN n 1 151 PRO n 1 152 ASP n 1 153 SER n 1 154 LYS n 1 155 GLY n 1 156 LEU n 1 157 SER n 1 158 ASN n 1 159 PRO n 1 160 ALA n 1 161 GLU n 1 162 VAL n 1 163 GLU n 1 164 ALA n 1 165 LEU n 1 166 ARG n 1 167 GLU n 1 168 LYS n 1 169 VAL n 1 170 TYR n 1 171 ALA n 1 172 SER n 1 173 LEU n 1 174 GLU n 1 175 ALA n 1 176 TYR n 1 177 CYS n 1 178 LYS n 1 179 HIS n 1 180 LYS n 1 181 TYR n 1 182 PRO n 1 183 GLU n 1 184 GLN n 1 185 PRO n 1 186 GLY n 1 187 ARG n 1 188 PHE n 1 189 ALA n 1 190 LYS n 1 191 LEU n 1 192 LEU n 1 193 LEU n 1 194 ARG n 1 195 LEU n 1 196 PRO n 1 197 ALA n 1 198 LEU n 1 199 ARG n 1 200 SER n 1 201 ILE n 1 202 GLY n 1 203 LEU n 1 204 LYS n 1 205 CYS n 1 206 LEU n 1 207 GLU n 1 208 HIS n 1 209 LEU n 1 210 PHE n 1 211 PHE n 1 212 PHE n 1 213 LYS n 1 214 LEU n 1 215 ILE n 1 216 GLY n 1 217 ASP n 1 218 THR n 1 219 PRO n 1 220 ILE n 1 221 ASP n 1 222 THR n 1 223 PHE n 1 224 LEU n 1 225 MET n 1 226 GLU n 1 227 MET n 1 228 LEU n 1 229 GLU n 1 230 ALA n 1 231 PRO n 1 232 HIS n 1 233 GLN n 1 234 MET n 1 235 THR n 2 1 LYS n 2 2 HIS n 2 3 LYS n 2 4 ILE n 2 5 LEU n 2 6 HIS n 2 7 ARG n 2 8 LEU n 2 9 LEU n 2 10 GLN n 2 11 ASP n 2 12 SER n 2 13 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR2B1, RXRA, RXRA NR2B1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RXRA_HUMAN P19793 1 ;EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT ; 228 ? 2 UNP NCOA2_HUMAN Q15596 2 KHKILHRLLQDSS 686 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RME A 1 ? 235 ? P19793 228 ? 462 ? 228 462 2 2 4RME B 1 ? 13 ? Q15596 686 ? 698 ? 471 483 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3T2 non-polymer . '(2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid' ? 'C24 H36 O2' 356.541 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RME _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '5-15% PEG4000, 4-12% Glycerol, 0.1M Bis-Tris pH=7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-02-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4RME _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.3 _reflns.number_obs 111626 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RME _refine.ls_number_reflns_obs 10894 _refine.ls_number_reflns_all 11607 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_all 0.273 _refine.ls_R_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.273 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 713 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 3OAP _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1787 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 1922 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.027 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d 0.449 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.38 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4RME _struct.title 'Crystal structure of human Retinoid X receptor alpha ligand binding domain complex with 9cUAB111 and coactivator peptide GRIP-1' _struct.pdbx_descriptor 'Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RME _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'ligand binding domain, cancer prevention, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 4 ? GLU A 16 ? PRO A 231 GLU A 243 1 ? 13 HELX_P HELX_P2 2 ASP A 36 ? ARG A 58 ? ASP A 263 ARG A 285 1 ? 23 HELX_P HELX_P3 3 PRO A 66 ? SER A 90 ? PRO A 293 SER A 317 1 ? 25 HELX_P HELX_P4 4 ARG A 107 ? SER A 112 ? ARG A 334 SER A 339 1 ? 6 HELX_P HELX_P5 5 VAL A 115 ? LEU A 126 ? VAL A 342 LEU A 353 1 ? 12 HELX_P HELX_P6 6 LEU A 126 ? MET A 133 ? LEU A 353 MET A 360 1 ? 8 HELX_P HELX_P7 7 ASP A 136 ? PHE A 149 ? ASP A 363 PHE A 376 1 ? 14 HELX_P HELX_P8 8 ASN A 158 ? CYS A 177 ? ASN A 385 CYS A 404 1 ? 20 HELX_P HELX_P9 9 GLY A 186 ? LEU A 193 ? GLY A 413 LEU A 420 1 ? 8 HELX_P HELX_P10 10 ARG A 194 ? GLY A 216 ? ARG A 421 GLY A 443 1 ? 23 HELX_P HELX_P11 11 ASP A 221 ? LEU A 228 ? ASP A 448 LEU A 455 1 ? 8 HELX_P HELX_P12 12 HIS B 2 ? ASP B 11 ? HIS B 472 ASP B 481 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 230 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 457 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 231 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 458 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.09 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 96 ? LEU A 98 ? GLY A 323 LEU A 325 A 2 HIS A 104 ? HIS A 106 ? HIS A 331 HIS A 333 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 97 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 324 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 105 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 332 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 3T2 A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 ILE A 41 ? ILE A 268 . ? 1_555 ? 2 AC1 14 ALA A 44 ? ALA A 271 . ? 1_555 ? 3 AC1 14 ALA A 45 ? ALA A 272 . ? 1_555 ? 4 AC1 14 GLN A 48 ? GLN A 275 . ? 1_555 ? 5 AC1 14 TRP A 78 ? TRP A 305 . ? 1_555 ? 6 AC1 14 PHE A 86 ? PHE A 313 . ? 1_555 ? 7 AC1 14 ARG A 89 ? ARG A 316 . ? 1_555 ? 8 AC1 14 ILE A 97 ? ILE A 324 . ? 1_555 ? 9 AC1 14 LEU A 99 ? LEU A 326 . ? 1_555 ? 10 AC1 14 ALA A 100 ? ALA A 327 . ? 1_555 ? 11 AC1 14 CYS A 205 ? CYS A 432 . ? 1_555 ? 12 AC1 14 HIS A 208 ? HIS A 435 . ? 1_555 ? 13 AC1 14 LEU A 209 ? LEU A 436 . ? 1_555 ? 14 AC1 14 HOH D . ? HOH A 612 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RME _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RME _atom_sites.fract_transf_matrix[1][1] 0.015158 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015158 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008901 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 228 228 GLU GLU A . n A 1 2 ASP 2 229 229 ASP ASP A . n A 1 3 MET 3 230 230 MET MET A . n A 1 4 PRO 4 231 231 PRO PRO A . n A 1 5 VAL 5 232 232 VAL VAL A . n A 1 6 GLU 6 233 233 GLU GLU A . n A 1 7 ARG 7 234 234 ARG ARG A . n A 1 8 ILE 8 235 235 ILE ILE A . n A 1 9 LEU 9 236 236 LEU LEU A . n A 1 10 GLU 10 237 237 GLU GLU A . n A 1 11 ALA 11 238 238 ALA ALA A . n A 1 12 GLU 12 239 239 GLU GLU A . n A 1 13 LEU 13 240 240 LEU LEU A . n A 1 14 ALA 14 241 241 ALA ALA A . n A 1 15 VAL 15 242 242 VAL VAL A . n A 1 16 GLU 16 243 243 GLU GLU A . n A 1 17 PRO 17 244 244 PRO PRO A . n A 1 18 LYS 18 245 ? ? ? A . n A 1 19 THR 19 246 ? ? ? A . n A 1 20 GLU 20 247 ? ? ? A . n A 1 21 THR 21 248 ? ? ? A . n A 1 22 TYR 22 249 ? ? ? A . n A 1 23 VAL 23 250 ? ? ? A . n A 1 24 GLU 24 251 ? ? ? A . n A 1 25 ALA 25 252 ? ? ? A . n A 1 26 ASN 26 253 ? ? ? A . n A 1 27 MET 27 254 ? ? ? A . n A 1 28 GLY 28 255 ? ? ? A . n A 1 29 LEU 29 256 ? ? ? A . n A 1 30 ASN 30 257 ? ? ? A . n A 1 31 PRO 31 258 ? ? ? A . n A 1 32 SER 32 259 ? ? ? A . n A 1 33 SER 33 260 ? ? ? A . n A 1 34 PRO 34 261 ? ? ? A . n A 1 35 ASN 35 262 262 ASN ASN A . n A 1 36 ASP 36 263 263 ASP ASP A . n A 1 37 PRO 37 264 264 PRO PRO A . n A 1 38 VAL 38 265 265 VAL VAL A . n A 1 39 THR 39 266 266 THR THR A . n A 1 40 ASN 40 267 267 ASN ASN A . n A 1 41 ILE 41 268 268 ILE ILE A . n A 1 42 CYS 42 269 269 CYS CYS A . n A 1 43 GLN 43 270 270 GLN GLN A . n A 1 44 ALA 44 271 271 ALA ALA A . n A 1 45 ALA 45 272 272 ALA ALA A . n A 1 46 ASP 46 273 273 ASP ASP A . n A 1 47 LYS 47 274 274 LYS LYS A . n A 1 48 GLN 48 275 275 GLN GLN A . n A 1 49 LEU 49 276 276 LEU LEU A . n A 1 50 PHE 50 277 277 PHE PHE A . n A 1 51 THR 51 278 278 THR THR A . n A 1 52 LEU 52 279 279 LEU LEU A . n A 1 53 VAL 53 280 280 VAL VAL A . n A 1 54 GLU 54 281 281 GLU GLU A . n A 1 55 TRP 55 282 282 TRP TRP A . n A 1 56 ALA 56 283 283 ALA ALA A . n A 1 57 LYS 57 284 284 LYS LYS A . n A 1 58 ARG 58 285 285 ARG ARG A . n A 1 59 ILE 59 286 286 ILE ILE A . n A 1 60 PRO 60 287 287 PRO PRO A . n A 1 61 HIS 61 288 288 HIS HIS A . n A 1 62 PHE 62 289 289 PHE PHE A . n A 1 63 SER 63 290 290 SER SER A . n A 1 64 GLU 64 291 291 GLU GLU A . n A 1 65 LEU 65 292 292 LEU LEU A . n A 1 66 PRO 66 293 293 PRO PRO A . n A 1 67 LEU 67 294 294 LEU LEU A . n A 1 68 ASP 68 295 295 ASP ASP A . n A 1 69 ASP 69 296 296 ASP ASP A . n A 1 70 GLN 70 297 297 GLN GLN A . n A 1 71 VAL 71 298 298 VAL VAL A . n A 1 72 ILE 72 299 299 ILE ILE A . n A 1 73 LEU 73 300 300 LEU LEU A . n A 1 74 LEU 74 301 301 LEU LEU A . n A 1 75 ARG 75 302 302 ARG ARG A . n A 1 76 ALA 76 303 303 ALA ALA A . n A 1 77 GLY 77 304 304 GLY GLY A . n A 1 78 TRP 78 305 305 TRP TRP A . n A 1 79 ASN 79 306 306 ASN ASN A . n A 1 80 GLU 80 307 307 GLU GLU A . n A 1 81 LEU 81 308 308 LEU LEU A . n A 1 82 LEU 82 309 309 LEU LEU A . n A 1 83 ILE 83 310 310 ILE ILE A . n A 1 84 ALA 84 311 311 ALA ALA A . n A 1 85 SER 85 312 312 SER SER A . n A 1 86 PHE 86 313 313 PHE PHE A . n A 1 87 SER 87 314 314 SER SER A . n A 1 88 HIS 88 315 315 HIS HIS A . n A 1 89 ARG 89 316 316 ARG ARG A . n A 1 90 SER 90 317 317 SER SER A . n A 1 91 ILE 91 318 318 ILE ILE A . n A 1 92 ALA 92 319 319 ALA ALA A . n A 1 93 VAL 93 320 320 VAL VAL A . n A 1 94 LYS 94 321 321 LYS LYS A . n A 1 95 ASP 95 322 322 ASP ASP A . n A 1 96 GLY 96 323 323 GLY GLY A . n A 1 97 ILE 97 324 324 ILE ILE A . n A 1 98 LEU 98 325 325 LEU LEU A . n A 1 99 LEU 99 326 326 LEU LEU A . n A 1 100 ALA 100 327 327 ALA ALA A . n A 1 101 THR 101 328 328 THR THR A . n A 1 102 GLY 102 329 329 GLY GLY A . n A 1 103 LEU 103 330 330 LEU LEU A . n A 1 104 HIS 104 331 331 HIS HIS A . n A 1 105 VAL 105 332 332 VAL VAL A . n A 1 106 HIS 106 333 333 HIS HIS A . n A 1 107 ARG 107 334 334 ARG ARG A . n A 1 108 ASN 108 335 335 ASN ASN A . n A 1 109 SER 109 336 336 SER SER A . n A 1 110 ALA 110 337 337 ALA ALA A . n A 1 111 HIS 111 338 338 HIS HIS A . n A 1 112 SER 112 339 339 SER SER A . n A 1 113 ALA 113 340 340 ALA ALA A . n A 1 114 GLY 114 341 341 GLY GLY A . n A 1 115 VAL 115 342 342 VAL VAL A . n A 1 116 GLY 116 343 343 GLY GLY A . n A 1 117 ALA 117 344 344 ALA ALA A . n A 1 118 ILE 118 345 345 ILE ILE A . n A 1 119 PHE 119 346 346 PHE PHE A . n A 1 120 ASP 120 347 347 ASP ASP A . n A 1 121 ARG 121 348 348 ARG ARG A . n A 1 122 VAL 122 349 349 VAL VAL A . n A 1 123 LEU 123 350 350 LEU LEU A . n A 1 124 THR 124 351 351 THR THR A . n A 1 125 GLU 125 352 352 GLU GLU A . n A 1 126 LEU 126 353 353 LEU LEU A . n A 1 127 VAL 127 354 354 VAL VAL A . n A 1 128 SER 128 355 355 SER SER A . n A 1 129 LYS 129 356 356 LYS LYS A . n A 1 130 MET 130 357 357 MET MET A . n A 1 131 ARG 131 358 358 ARG ARG A . n A 1 132 ASP 132 359 359 ASP ASP A . n A 1 133 MET 133 360 360 MET MET A . n A 1 134 GLN 134 361 361 GLN GLN A . n A 1 135 MET 135 362 362 MET MET A . n A 1 136 ASP 136 363 363 ASP ASP A . n A 1 137 LYS 137 364 364 LYS LYS A . n A 1 138 THR 138 365 365 THR THR A . n A 1 139 GLU 139 366 366 GLU GLU A . n A 1 140 LEU 140 367 367 LEU LEU A . n A 1 141 GLY 141 368 368 GLY GLY A . n A 1 142 CYS 142 369 369 CYS CYS A . n A 1 143 LEU 143 370 370 LEU LEU A . n A 1 144 ARG 144 371 371 ARG ARG A . n A 1 145 ALA 145 372 372 ALA ALA A . n A 1 146 ILE 146 373 373 ILE ILE A . n A 1 147 VAL 147 374 374 VAL VAL A . n A 1 148 LEU 148 375 375 LEU LEU A . n A 1 149 PHE 149 376 376 PHE PHE A . n A 1 150 ASN 150 377 377 ASN ASN A . n A 1 151 PRO 151 378 378 PRO PRO A . n A 1 152 ASP 152 379 379 ASP ASP A . n A 1 153 SER 153 380 380 SER SER A . n A 1 154 LYS 154 381 381 LYS LYS A . n A 1 155 GLY 155 382 382 GLY GLY A . n A 1 156 LEU 156 383 383 LEU LEU A . n A 1 157 SER 157 384 384 SER SER A . n A 1 158 ASN 158 385 385 ASN ASN A . n A 1 159 PRO 159 386 386 PRO PRO A . n A 1 160 ALA 160 387 387 ALA ALA A . n A 1 161 GLU 161 388 388 GLU GLU A . n A 1 162 VAL 162 389 389 VAL VAL A . n A 1 163 GLU 163 390 390 GLU GLU A . n A 1 164 ALA 164 391 391 ALA ALA A . n A 1 165 LEU 165 392 392 LEU LEU A . n A 1 166 ARG 166 393 393 ARG ARG A . n A 1 167 GLU 167 394 394 GLU GLU A . n A 1 168 LYS 168 395 395 LYS LYS A . n A 1 169 VAL 169 396 396 VAL VAL A . n A 1 170 TYR 170 397 397 TYR TYR A . n A 1 171 ALA 171 398 398 ALA ALA A . n A 1 172 SER 172 399 399 SER SER A . n A 1 173 LEU 173 400 400 LEU LEU A . n A 1 174 GLU 174 401 401 GLU GLU A . n A 1 175 ALA 175 402 402 ALA ALA A . n A 1 176 TYR 176 403 403 TYR TYR A . n A 1 177 CYS 177 404 404 CYS CYS A . n A 1 178 LYS 178 405 405 LYS LYS A . n A 1 179 HIS 179 406 406 HIS HIS A . n A 1 180 LYS 180 407 407 LYS LYS A . n A 1 181 TYR 181 408 408 TYR TYR A . n A 1 182 PRO 182 409 409 PRO PRO A . n A 1 183 GLU 183 410 410 GLU GLU A . n A 1 184 GLN 184 411 411 GLN GLN A . n A 1 185 PRO 185 412 412 PRO PRO A . n A 1 186 GLY 186 413 413 GLY GLY A . n A 1 187 ARG 187 414 414 ARG ARG A . n A 1 188 PHE 188 415 415 PHE PHE A . n A 1 189 ALA 189 416 416 ALA ALA A . n A 1 190 LYS 190 417 417 LYS LYS A . n A 1 191 LEU 191 418 418 LEU LEU A . n A 1 192 LEU 192 419 419 LEU LEU A . n A 1 193 LEU 193 420 420 LEU LEU A . n A 1 194 ARG 194 421 421 ARG ARG A . n A 1 195 LEU 195 422 422 LEU LEU A . n A 1 196 PRO 196 423 423 PRO PRO A . n A 1 197 ALA 197 424 424 ALA ALA A . n A 1 198 LEU 198 425 425 LEU LEU A . n A 1 199 ARG 199 426 426 ARG ARG A . n A 1 200 SER 200 427 427 SER SER A . n A 1 201 ILE 201 428 428 ILE ILE A . n A 1 202 GLY 202 429 429 GLY GLY A . n A 1 203 LEU 203 430 430 LEU LEU A . n A 1 204 LYS 204 431 431 LYS LYS A . n A 1 205 CYS 205 432 432 CYS CYS A . n A 1 206 LEU 206 433 433 LEU LEU A . n A 1 207 GLU 207 434 434 GLU GLU A . n A 1 208 HIS 208 435 435 HIS HIS A . n A 1 209 LEU 209 436 436 LEU LEU A . n A 1 210 PHE 210 437 437 PHE PHE A . n A 1 211 PHE 211 438 438 PHE PHE A . n A 1 212 PHE 212 439 439 PHE PHE A . n A 1 213 LYS 213 440 440 LYS LYS A . n A 1 214 LEU 214 441 441 LEU LEU A . n A 1 215 ILE 215 442 442 ILE ILE A . n A 1 216 GLY 216 443 443 GLY GLY A . n A 1 217 ASP 217 444 444 ASP ASP A . n A 1 218 THR 218 445 445 THR THR A . n A 1 219 PRO 219 446 446 PRO PRO A . n A 1 220 ILE 220 447 447 ILE ILE A . n A 1 221 ASP 221 448 448 ASP ASP A . n A 1 222 THR 222 449 449 THR THR A . n A 1 223 PHE 223 450 450 PHE PHE A . n A 1 224 LEU 224 451 451 LEU LEU A . n A 1 225 MET 225 452 452 MET MET A . n A 1 226 GLU 226 453 453 GLU GLU A . n A 1 227 MET 227 454 454 MET MET A . n A 1 228 LEU 228 455 455 LEU LEU A . n A 1 229 GLU 229 456 456 GLU GLU A . n A 1 230 ALA 230 457 457 ALA ALA A . n A 1 231 PRO 231 458 458 PRO PRO A . n A 1 232 HIS 232 459 ? ? ? A . n A 1 233 GLN 233 460 ? ? ? A . n A 1 234 MET 234 461 ? ? ? A . n A 1 235 THR 235 462 ? ? ? A . n B 2 1 LYS 1 471 471 LYS LYS B . n B 2 2 HIS 2 472 472 HIS HIS B . n B 2 3 LYS 3 473 473 LYS LYS B . n B 2 4 ILE 4 474 474 ILE ILE B . n B 2 5 LEU 5 475 475 LEU LEU B . n B 2 6 HIS 6 476 476 HIS HIS B . n B 2 7 ARG 7 477 477 ARG ARG B . n B 2 8 LEU 8 478 478 LEU LEU B . n B 2 9 LEU 9 479 479 LEU LEU B . n B 2 10 GLN 10 480 480 GLN GLN B . n B 2 11 ASP 11 481 481 ASP ASP B . n B 2 12 SER 12 482 ? ? ? B . n B 2 13 SER 13 483 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1150 ? 1 MORE -8 ? 1 'SSA (A^2)' 10870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-16 2 'Structure model' 1 1 2015-10-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 702 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 702 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_775 _pdbx_validate_symm_contact.dist 1.30 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 229 ? ? 79.16 93.78 2 1 MET A 230 ? ? -169.53 62.56 3 1 ASP A 263 ? ? -54.54 109.81 4 1 HIS A 288 ? ? 70.75 -3.04 5 1 LEU A 294 ? ? -39.53 -39.89 6 1 LYS A 321 ? ? -72.99 -87.38 7 1 ASP A 322 ? ? -119.66 72.21 8 1 LEU A 353 ? ? -108.36 -73.65 9 1 LYS A 405 ? ? 69.84 -27.78 10 1 THR A 445 ? ? 72.57 105.26 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 245 ? A LYS 18 2 1 Y 1 A THR 246 ? A THR 19 3 1 Y 1 A GLU 247 ? A GLU 20 4 1 Y 1 A THR 248 ? A THR 21 5 1 Y 1 A TYR 249 ? A TYR 22 6 1 Y 1 A VAL 250 ? A VAL 23 7 1 Y 1 A GLU 251 ? A GLU 24 8 1 Y 1 A ALA 252 ? A ALA 25 9 1 Y 1 A ASN 253 ? A ASN 26 10 1 Y 1 A MET 254 ? A MET 27 11 1 Y 1 A GLY 255 ? A GLY 28 12 1 Y 1 A LEU 256 ? A LEU 29 13 1 Y 1 A ASN 257 ? A ASN 30 14 1 Y 1 A PRO 258 ? A PRO 31 15 1 Y 1 A SER 259 ? A SER 32 16 1 Y 1 A SER 260 ? A SER 33 17 1 Y 1 A PRO 261 ? A PRO 34 18 1 Y 1 A HIS 459 ? A HIS 232 19 1 Y 1 A GLN 460 ? A GLN 233 20 1 Y 1 A MET 461 ? A MET 234 21 1 Y 1 A THR 462 ? A THR 235 22 1 Y 1 B SER 482 ? B SER 12 23 1 Y 1 B SER 483 ? B SER 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid' 3T2 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3T2 1 500 500 3T2 111 A . D 4 HOH 1 601 501 HOH HOH A . D 4 HOH 2 602 502 HOH HOH A . D 4 HOH 3 603 503 HOH HOH A . D 4 HOH 4 604 504 HOH HOH A . D 4 HOH 5 605 505 HOH HOH A . D 4 HOH 6 606 506 HOH HOH A . D 4 HOH 7 607 507 HOH HOH A . D 4 HOH 8 608 508 HOH HOH A . D 4 HOH 9 609 509 HOH HOH A . D 4 HOH 10 610 510 HOH HOH A . D 4 HOH 11 611 511 HOH HOH A . D 4 HOH 12 612 512 HOH HOH A . D 4 HOH 13 613 513 HOH HOH A . D 4 HOH 14 614 516 HOH HOH A . D 4 HOH 15 615 518 HOH HOH A . D 4 HOH 16 616 519 HOH HOH A . D 4 HOH 17 617 521 HOH HOH A . D 4 HOH 18 618 522 HOH HOH A . D 4 HOH 19 619 523 HOH HOH A . D 4 HOH 20 620 524 HOH HOH A . D 4 HOH 21 621 525 HOH HOH A . D 4 HOH 22 622 526 HOH HOH A . D 4 HOH 23 623 528 HOH HOH A . D 4 HOH 24 624 529 HOH HOH A . D 4 HOH 25 625 530 HOH HOH A . D 4 HOH 26 626 531 HOH HOH A . D 4 HOH 27 627 532 HOH HOH A . D 4 HOH 28 628 533 HOH HOH A . D 4 HOH 29 629 534 HOH HOH A . D 4 HOH 30 630 535 HOH HOH A . D 4 HOH 31 631 536 HOH HOH A . D 4 HOH 32 632 539 HOH HOH A . D 4 HOH 33 633 540 HOH HOH A . D 4 HOH 34 634 541 HOH HOH A . D 4 HOH 35 635 542 HOH HOH A . D 4 HOH 36 636 544 HOH HOH A . D 4 HOH 37 637 545 HOH HOH A . D 4 HOH 38 638 546 HOH HOH A . D 4 HOH 39 639 548 HOH HOH A . D 4 HOH 40 640 549 HOH HOH A . D 4 HOH 41 641 555 HOH HOH A . D 4 HOH 42 642 556 HOH HOH A . D 4 HOH 43 643 557 HOH HOH A . D 4 HOH 44 644 558 HOH HOH A . D 4 HOH 45 645 561 HOH HOH A . D 4 HOH 46 646 562 HOH HOH A . D 4 HOH 47 647 564 HOH HOH A . D 4 HOH 48 648 565 HOH HOH A . D 4 HOH 49 649 567 HOH HOH A . D 4 HOH 50 650 568 HOH HOH A . D 4 HOH 51 651 569 HOH HOH A . D 4 HOH 52 652 570 HOH HOH A . D 4 HOH 53 653 571 HOH HOH A . D 4 HOH 54 654 572 HOH HOH A . D 4 HOH 55 655 573 HOH HOH A . D 4 HOH 56 656 574 HOH HOH A . D 4 HOH 57 657 575 HOH HOH A . D 4 HOH 58 658 577 HOH HOH A . D 4 HOH 59 659 581 HOH HOH A . D 4 HOH 60 660 582 HOH HOH A . D 4 HOH 61 661 584 HOH HOH A . D 4 HOH 62 662 585 HOH HOH A . D 4 HOH 63 663 586 HOH HOH A . D 4 HOH 64 664 587 HOH HOH A . D 4 HOH 65 665 588 HOH HOH A . D 4 HOH 66 666 589 HOH HOH A . D 4 HOH 67 667 590 HOH HOH A . D 4 HOH 68 668 591 HOH HOH A . D 4 HOH 69 669 592 HOH HOH A . D 4 HOH 70 670 593 HOH HOH A . D 4 HOH 71 671 594 HOH HOH A . D 4 HOH 72 672 595 HOH HOH A . D 4 HOH 73 673 597 HOH HOH A . D 4 HOH 74 674 598 HOH HOH A . D 4 HOH 75 675 599 HOH HOH A . D 4 HOH 76 676 600 HOH HOH A . D 4 HOH 77 677 601 HOH HOH A . D 4 HOH 78 678 602 HOH HOH A . D 4 HOH 79 679 603 HOH HOH A . D 4 HOH 80 680 605 HOH HOH A . D 4 HOH 81 681 606 HOH HOH A . D 4 HOH 82 682 608 HOH HOH A . D 4 HOH 83 683 609 HOH HOH A . D 4 HOH 84 684 610 HOH HOH A . D 4 HOH 85 685 611 HOH HOH A . D 4 HOH 86 686 612 HOH HOH A . D 4 HOH 87 687 615 HOH HOH A . D 4 HOH 88 688 616 HOH HOH A . D 4 HOH 89 689 617 HOH HOH A . D 4 HOH 90 690 618 HOH HOH A . D 4 HOH 91 691 619 HOH HOH A . D 4 HOH 92 692 620 HOH HOH A . D 4 HOH 93 693 621 HOH HOH A . D 4 HOH 94 694 622 HOH HOH A . D 4 HOH 95 695 623 HOH HOH A . D 4 HOH 96 696 624 HOH HOH A . D 4 HOH 97 697 628 HOH HOH A . D 4 HOH 98 698 629 HOH HOH A . D 4 HOH 99 699 630 HOH HOH A . D 4 HOH 100 700 632 HOH HOH A . D 4 HOH 101 701 633 HOH HOH A . D 4 HOH 102 702 634 HOH HOH A . D 4 HOH 103 703 637 HOH HOH A . D 4 HOH 104 704 638 HOH HOH A . D 4 HOH 105 705 640 HOH HOH A . D 4 HOH 106 706 641 HOH HOH A . D 4 HOH 107 707 642 HOH HOH A . D 4 HOH 108 708 643 HOH HOH A . E 4 HOH 1 501 514 HOH HOH B . #