HEADER LIGASE 21-OCT-14 4RMF TITLE BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF MYCOBACTERIAL ASPARTYL- TITLE 2 TRNA SYNTHETASE ASPS, A PROMISING TB DRUG TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE--TRNA(ASP/ASN) LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTYL-TRNA SYNTHETASE, ASPRS, NON-DISCRIMINATING COMPND 5 ASPARTYL-TRNA SYNTHETASE, ND-ASPRS; COMPND 6 EC: 6.1.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: ASPS, MSMEG_3003, MSMEI_2928; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS ALPHA AND BETA PROTEINS, TRNA SYNTHETASE, TRNA, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.G.COX,S.S.GURCHA,U.VEERARAGHAVAN,G.S.BESRA,K.FUTTERER REVDAT 3 20-SEP-23 4RMF 1 REMARK SEQADV REVDAT 2 03-DEC-14 4RMF 1 JRNL REVDAT 1 19-NOV-14 4RMF 0 JRNL AUTH S.S.GURCHA,V.USHA,J.A.COX,K.FUTTERER,K.A.ABRAHAMS,A.BHATT, JRNL AUTH 2 L.J.ALDERWICK,R.C.REYNOLDS,N.J.LOMAN,V.NATARAJ,C.ALEMPARTE, JRNL AUTH 3 D.BARROS,A.J.LLOYD,L.BALLELL,J.V.HOBRATH,G.S.BESRA JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF MYCOBACTERIAL JRNL TITL 2 ASPARTYL-TRNA SYNTHETASE ASPS, A PROMISING TB DRUG TARGET. JRNL REF PLOS ONE V. 9 13568 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25409504 JRNL DOI 10.1371/JOURNAL.PONE.0113568 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4436 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6040 ; 1.163 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 6.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;31.617 ;23.010 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;16.821 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3484 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 580 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7590 -15.7840 8.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1532 REMARK 3 T33: 0.0478 T12: -0.0470 REMARK 3 T13: -0.0073 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.4310 L22: 0.9762 REMARK 3 L33: 0.5205 L12: 0.2336 REMARK 3 L13: -0.0139 L23: 0.1056 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: -0.1022 S13: -0.1063 REMARK 3 S21: 0.0807 S22: -0.1150 S23: 0.0613 REMARK 3 S31: 0.1030 S32: -0.1717 S33: 0.0477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTI-LAYER MIRRORS (VARIMAX) REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1C0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (V/V) PENTAERYTHRITOL ETHOXYLATE, REMARK 280 0.1 M MAGNESIUM FORMATE, 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.40850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.40850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.80450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.75700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.80450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.75700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.40850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.80450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.75700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.40850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.80450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.75700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 810 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 581 REMARK 465 ASP A 582 REMARK 465 ALA A 583 REMARK 465 LYS A 584 REMARK 465 PRO A 585 REMARK 465 ARG A 586 REMARK 465 GLU A 587 REMARK 465 ASP A 588 REMARK 465 LYS A 589 REMARK 465 PRO A 590 REMARK 465 LYS A 591 REMARK 465 GLU A 592 REMARK 465 ASP A 593 REMARK 465 ALA A 594 REMARK 465 LYS A 595 REMARK 465 SER A 596 REMARK 465 LYS A 597 REMARK 465 ALA A 598 REMARK 465 ALA A 599 REMARK 465 ALA A 600 REMARK 465 ALA A 601 REMARK 465 LEU A 602 REMARK 465 GLU A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 VAL A 76 CG1 CG2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 GLU A 97 CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 THR A 168 OG1 CG2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ARG A 216 NE CZ NH1 NH2 REMARK 470 GLU A 218 OE1 OE2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 THR A 257 CG2 REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 325 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 LYS A 335 CE NZ REMARK 470 GLN A 336 CD OE1 NE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 389 CD CE NZ REMARK 470 LYS A 404 CE NZ REMARK 470 ASP A 429 CG OD1 OD2 REMARK 470 ASP A 506 OD1 OD2 REMARK 470 GLU A 512 CG CD OE1 OE2 REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 GLN A 574 CD OE1 NE2 REMARK 470 LYS A 577 CG CD CE NZ REMARK 470 SER A 579 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 169 43.57 -80.01 REMARK 500 ALA A 172 148.38 84.86 REMARK 500 GLU A 206 -48.10 79.25 REMARK 500 ASP A 219 2.26 -66.29 REMARK 500 SER A 321 11.31 -69.43 REMARK 500 GLN A 336 -6.74 -56.54 REMARK 500 SER A 441 -74.65 -92.78 REMARK 500 ALA A 443 -170.04 -66.67 REMARK 500 ASP A 472 51.01 -96.95 REMARK 500 TYR A 523 53.50 -119.62 REMARK 500 LYS A 577 10.88 -64.29 REMARK 500 SER A 579 40.66 -151.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3SY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 702 DBREF 4RMF A 1 598 UNP A0QWN3 SYDND_MYCS2 1 598 SEQADV 4RMF ALA A 599 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF ALA A 600 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF ALA A 601 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF LEU A 602 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF GLU A 603 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 604 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 605 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 606 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 607 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 608 UNP A0QWN3 EXPRESSION TAG SEQADV 4RMF HIS A 609 UNP A0QWN3 EXPRESSION TAG SEQRES 1 A 609 MET LEU ARG THR HIS ALA ALA GLY SER LEU ARG PRO ALA SEQRES 2 A 609 ASP ALA GLY GLN THR VAL THR LEU ALA GLY TRP VAL ALA SEQRES 3 A 609 ARG ARG ARG ASP HIS GLY GLY VAL ILE PHE ILE ASP LEU SEQRES 4 A 609 ARG ASP ALA SER GLY VAL SER GLN VAL VAL PHE ARG GLU SEQRES 5 A 609 GLY ASP VAL LEU ALA ALA ALA HIS ARG LEU ARG ALA GLU SEQRES 6 A 609 PHE CYS VAL ALA VAL THR GLY VAL VAL GLU VAL ARG PRO SEQRES 7 A 609 GLU GLY ASN GLU ASN PRO GLU ILE PRO THR GLY GLN ILE SEQRES 8 A 609 GLU VAL ASN ALA THR GLU LEU THR VAL LEU GLY GLU SER SEQRES 9 A 609 ALA PRO LEU PRO PHE GLN LEU ASP GLU GLN ALA GLY GLU SEQRES 10 A 609 GLU ALA ARG LEU LYS TYR ARG TYR LEU ASP LEU ARG ARG SEQRES 11 A 609 GLU GLY PRO GLY ASN ALA LEU ARG LEU ARG SER LYS VAL SEQRES 12 A 609 ASN ALA ALA ALA ARG SER VAL LEU ALA GLU HIS ASP PHE SEQRES 13 A 609 VAL GLU ILE GLU THR PRO THR LEU THR ARG SER THR PRO SEQRES 14 A 609 GLU GLY ALA ARG ASP PHE LEU VAL PRO ALA ARG LEU GLN SEQRES 15 A 609 PRO GLY SER PHE TYR ALA LEU PRO GLN SER PRO GLN LEU SEQRES 16 A 609 PHE LYS GLN LEU LEU MET VAL ALA GLY MET GLU ARG TYR SEQRES 17 A 609 TYR GLN ILE ALA ARG CYS TYR ARG ASP GLU ASP PHE ARG SEQRES 18 A 609 ALA ASP ARG GLN PRO GLU PHE THR GLN LEU ASP MET GLU SEQRES 19 A 609 MET SER PHE VAL GLU ALA ASP ASP VAL ILE ALA ILE SER SEQRES 20 A 609 GLU GLN VAL LEU LYS ALA VAL TRP ALA THR ILE GLY TYR SEQRES 21 A 609 ASP LEU PRO LEU PRO LEU PRO ARG ILE SER TYR GLU GLU SEQRES 22 A 609 ALA MET ARG ARG PHE GLY SER ASP LYS PRO ASP LEU ARG SEQRES 23 A 609 PHE GLY ILE GLU LEU VAL GLU CYS THR GLU TYR PHE LYS SEQRES 24 A 609 ASP THR THR PHE ARG VAL PHE GLN ALA PRO TYR VAL GLY SEQRES 25 A 609 ALA VAL VAL MET PRO GLY GLY ALA SER GLN PRO ARG ARG SEQRES 26 A 609 THR LEU ASP GLY TRP GLN GLU PHE ALA LYS GLN ARG GLY SEQRES 27 A 609 HIS LYS GLY LEU ALA TYR VAL LEU VAL GLY GLU ASP GLY SEQRES 28 A 609 THR LEU GLY GLY PRO VAL ALA LYS ASN LEU SER ASP ALA SEQRES 29 A 609 GLU ARG ASP GLY LEU VAL ALA HIS VAL GLY ALA ASN PRO SEQRES 30 A 609 GLY ASP CYS ILE PHE PHE ALA ALA GLY PRO ALA LYS GLY SEQRES 31 A 609 ALA ARG ALA LEU LEU GLY ALA THR ARG ILE GLU ILE ALA SEQRES 32 A 609 LYS ARG LEU ASP LEU ILE ASP PRO ASN ALA TRP ALA PHE SEQRES 33 A 609 THR TRP VAL VAL ASP PHE PRO MET PHE GLU ALA ALA ASP SEQRES 34 A 609 GLU ALA THR ALA ALA GLY ASP VAL ALA VAL GLY SER GLY SEQRES 35 A 609 ALA TRP THR ALA MET HIS HIS ALA PHE THR ALA PRO LYS SEQRES 36 A 609 PRO ASP SER VAL ASP THR PHE ASP SER ASP PRO GLY ASN SEQRES 37 A 609 ALA LEU SER ASP ALA TYR ASP ILE VAL CYS ASN GLY ASN SEQRES 38 A 609 GLU ILE GLY GLY GLY SER ILE ARG ILE HIS ARG ARG ASP SEQRES 39 A 609 ILE GLN GLU ARG VAL PHE ALA MET MET GLY ILE ASP HIS SEQRES 40 A 609 ASP GLU ALA GLN GLU LYS PHE GLY PHE LEU LEU ASP ALA SEQRES 41 A 609 PHE SER TYR GLY ALA PRO PRO HIS GLY GLY ILE ALA PHE SEQRES 42 A 609 GLY TRP ASP ARG ILE THR ALA LEU LEU ALA GLY VAL ASP SEQRES 43 A 609 SER ILE ARG GLU VAL ILE ALA PHE PRO LYS SER GLY GLY SEQRES 44 A 609 GLY VAL ASP PRO LEU THR ASP ALA PRO ALA PRO ILE THR SEQRES 45 A 609 PRO GLN GLN ARG LYS GLU SER GLY ILE ASP ALA LYS PRO SEQRES 46 A 609 ARG GLU ASP LYS PRO LYS GLU ASP ALA LYS SER LYS ALA SEQRES 47 A 609 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET 3SY A 701 9 HET FMT A 702 3 HETNAM 3SY 2,2-BIS(HYDROXYMETHYL)PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID FORMUL 2 3SY C5 H12 O4 FORMUL 3 FMT C H2 O2 FORMUL 4 HOH *124(H2 O) HELIX 1 1 ALA A 6 LEU A 10 5 5 HELIX 2 2 ARG A 11 ALA A 15 5 5 HELIX 3 3 GLU A 52 HIS A 60 1 9 HELIX 4 4 GLY A 116 TYR A 123 1 8 HELIX 5 5 TYR A 123 LEU A 128 1 6 HELIX 6 6 ARG A 130 HIS A 154 1 25 HELIX 7 7 PRO A 193 ALA A 203 1 11 HELIX 8 8 GLU A 239 THR A 257 1 19 HELIX 9 9 TYR A 271 GLY A 279 1 9 HELIX 10 10 PHE A 303 GLN A 307 5 5 HELIX 11 11 GLY A 318 GLN A 322 5 5 HELIX 12 12 PRO A 323 GLN A 336 1 14 HELIX 13 13 VAL A 357 LEU A 361 5 5 HELIX 14 14 SER A 362 GLY A 368 1 7 HELIX 15 15 GLY A 368 GLY A 374 1 7 HELIX 16 16 PRO A 387 ASP A 407 1 21 HELIX 17 17 LYS A 455 VAL A 459 5 5 HELIX 18 18 ASP A 465 ALA A 469 5 5 HELIX 19 19 ARG A 492 MET A 503 1 12 HELIX 20 20 ASP A 506 PHE A 521 1 16 HELIX 21 21 TRP A 535 GLY A 544 1 10 HELIX 22 22 SER A 547 ILE A 552 5 6 HELIX 23 23 THR A 572 LYS A 577 1 6 SHEET 1 A 6 THR A 18 HIS A 31 0 SHEET 2 A 6 VAL A 34 ASP A 41 -1 O ARG A 40 N TRP A 24 SHEET 3 A 6 GLY A 44 PHE A 50 -1 O SER A 46 N LEU A 39 SHEET 4 A 6 ILE A 91 GLY A 102 1 O VAL A 93 N VAL A 49 SHEET 5 A 6 CYS A 67 VAL A 76 -1 N THR A 71 O THR A 96 SHEET 6 A 6 THR A 18 HIS A 31 -1 N VAL A 19 O GLY A 72 SHEET 1 B 8 VAL A 157 GLU A 158 0 SHEET 2 B 8 ARG A 207 TYR A 215 1 O ARG A 207 N VAL A 157 SHEET 3 B 8 GLU A 227 SER A 236 -1 O ASP A 232 N GLN A 210 SHEET 4 B 8 HIS A 528 GLY A 534 -1 O GLY A 529 N MET A 235 SHEET 5 B 8 ASN A 481 ILE A 488 -1 N GLY A 485 O ALA A 532 SHEET 6 B 8 ALA A 473 CYS A 478 -1 N CYS A 478 O ASN A 481 SHEET 7 B 8 PHE A 416 VAL A 420 -1 N THR A 417 O VAL A 477 SHEET 8 B 8 ARG A 268 SER A 270 1 N ILE A 269 O VAL A 420 SHEET 1 C 2 LEU A 176 PRO A 178 0 SHEET 2 C 2 PHE A 186 ALA A 188 -1 O TYR A 187 N VAL A 177 SHEET 1 D 5 VAL A 292 GLU A 293 0 SHEET 2 D 5 VAL A 311 MET A 316 -1 O ALA A 313 N VAL A 292 SHEET 3 D 5 CYS A 380 ALA A 385 -1 O PHE A 382 N VAL A 314 SHEET 4 D 5 ALA A 343 VAL A 347 -1 N ALA A 343 O PHE A 383 SHEET 5 D 5 LEU A 353 GLY A 354 -1 O GLY A 354 N LEU A 346 SHEET 1 E 2 PHE A 425 ALA A 427 0 SHEET 2 E 2 TRP A 444 ALA A 446 -1 O THR A 445 N GLU A 426 CISPEP 1 LEU A 264 PRO A 265 0 -1.63 CISPEP 2 ALA A 567 PRO A 568 0 -7.62 CISPEP 3 GLU A 578 SER A 579 0 -5.53 SITE 1 AC1 5 MET A 447 HIS A 448 ASP A 475 GLU A 482 SITE 2 AC1 5 GLY A 485 SITE 1 AC2 9 GLN A 194 LYS A 197 HIS A 448 HIS A 449 SITE 2 AC2 9 GLY A 485 GLY A 486 ARG A 489 ILE A 531 SITE 3 AC2 9 ALA A 532 CRYST1 71.609 141.514 156.817 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006377 0.00000