data_4RMR # _entry.id 4RMR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB087538 PDB 4RMR WWPDB D_1000087538 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2YXF . unspecified PDB 4FXL . unspecified PDB 4RMQ . unspecified PDB 4RMS . unspecified PDB 4RMT . unspecified PDB 4RMU . unspecified PDB 4RMV . unspecified PDB 4RMW . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RMR _pdbx_database_status.recvd_initial_deposition_date 2014-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'de Rosa, M.' 1 'Bolognesi, M.' 2 'Ricagno, S.' 3 # _citation.id primary _citation.title 'Decoding the Structural Bases of D76N 2-Microglobulin High Amyloidogenicity through Crystallography and Asn-Scan Mutagenesis.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 10 _citation.page_first e0144061 _citation.page_last e0144061 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26625273 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0144061 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'de Rosa, M.' 1 primary 'Barbiroli, A.' 2 primary 'Giorgetti, S.' 3 primary 'Mangione, P.P.' 4 primary 'Bolognesi, M.' 5 primary 'Ricagno, S.' 6 # _cell.entry_id 4RMR _cell.length_a 52.350 _cell.length_b 29.120 _cell.length_c 71.187 _cell.angle_alpha 90.00 _cell.angle_beta 92.01 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RMR _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-2-microglobulin 11878.372 1 ? D38N 'UNP residues 21-119' ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVNLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; _entity_poly.pdbx_seq_one_letter_code_can ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVNLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 GLN n 1 4 ARG n 1 5 THR n 1 6 PRO n 1 7 LYS n 1 8 ILE n 1 9 GLN n 1 10 VAL n 1 11 TYR n 1 12 SER n 1 13 ARG n 1 14 HIS n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 ASN n 1 19 GLY n 1 20 LYS n 1 21 SER n 1 22 ASN n 1 23 PHE n 1 24 LEU n 1 25 ASN n 1 26 CYS n 1 27 TYR n 1 28 VAL n 1 29 SER n 1 30 GLY n 1 31 PHE n 1 32 HIS n 1 33 PRO n 1 34 SER n 1 35 ASP n 1 36 ILE n 1 37 GLU n 1 38 VAL n 1 39 ASN n 1 40 LEU n 1 41 LEU n 1 42 LYS n 1 43 ASN n 1 44 GLY n 1 45 GLU n 1 46 ARG n 1 47 ILE n 1 48 GLU n 1 49 LYS n 1 50 VAL n 1 51 GLU n 1 52 HIS n 1 53 SER n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 PHE n 1 58 SER n 1 59 LYS n 1 60 ASP n 1 61 TRP n 1 62 SER n 1 63 PHE n 1 64 TYR n 1 65 LEU n 1 66 LEU n 1 67 TYR n 1 68 TYR n 1 69 THR n 1 70 GLU n 1 71 PHE n 1 72 THR n 1 73 PRO n 1 74 THR n 1 75 GLU n 1 76 LYS n 1 77 ASP n 1 78 GLU n 1 79 TYR n 1 80 ALA n 1 81 CYS n 1 82 ARG n 1 83 VAL n 1 84 ASN n 1 85 HIS n 1 86 VAL n 1 87 THR n 1 88 LEU n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 LYS n 1 93 ILE n 1 94 VAL n 1 95 LYS n 1 96 TRP n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B2M, CDABP0092, HDCMA22P, NM_004048' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B2MG_HUMAN _struct_ref.pdbx_db_accession P61769 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC RVNHVTLSQPKIVKWDRDM ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RMR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 100 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P61769 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 119 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RMR MET A 1 ? UNP P61769 ? ? 'INITIATING METHIONINE' 0 1 1 4RMR ASN A 39 ? UNP P61769 ASP 58 'ENGINEERED MUTATION' 38 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RMR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 46.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '21% PEG4000, 15% glycerol, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.pdbx_collection_date 2014-08-29 _diffrn_detector.details 'bent cylindrical mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 4RMR _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 26.159 _reflns.d_resolution_high 1.529 _reflns.number_obs 16017 _reflns.number_all 16444 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.529 _reflns_shell.d_res_low 1.56 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.459 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RMR _refine.ls_number_reflns_obs 15941 _refine.ls_number_reflns_all 16500 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.159 _refine.ls_d_res_high 1.529 _refine.ls_percent_reflns_obs 96.61 _refine.ls_R_factor_obs 0.1994 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1942 _refine.ls_R_factor_R_free 0.2478 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.94 _refine.ls_number_reflns_R_free 1585 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2YXF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 30.79 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 833 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 917 _refine_hist.d_res_high 1.529 _refine_hist.d_res_low 26.159 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.018 ? ? 929 ? 'X-RAY DIFFRACTION' f_angle_d 1.737 ? ? 1261 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.337 ? ? 359 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.095 ? ? 131 ? 'X-RAY DIFFRACTION' f_plane_restr 0.009 ? ? 163 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.529 1.5784 1308 0.3582 97.0 0.3981 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.5784 1.6348 1292 0.3142 97.0 0.3492 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.6348 1.7003 1274 0.2913 96.0 0.3528 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.7003 1.7776 1237 0.2512 95.0 0.3038 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.7776 1.8713 1331 0.2260 98.0 0.2500 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.8713 1.9885 1298 0.1923 97.0 0.2602 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.9885 2.1420 1284 0.1771 95.0 0.2322 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.1420 2.3574 1321 0.1846 98.0 0.2226 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.3574 2.6983 1305 0.1989 96.0 0.2637 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.6983 3.3983 1344 0.1858 98.0 0.2312 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.3983 26.1627 1362 0.1619 96.0 0.2215 . . 146 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4RMR _struct.title 'Crystal structure of the D38N Beta-2 Microglobulin mutant' _struct.pdbx_descriptor Beta-2-microglobulin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RMR _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'immunoglobin, beta-sandwitch, amyloidosis, pathologic mutation, genetic disease, MHC class I, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG A ? ? 1_555 A CYS 81 SG A ? A CYS 25 A CYS 80 1_555 ? ? ? ? ? ? ? 2.002 ? disulf2 disulf ? ? A CYS 26 SG B ? ? 1_555 A CYS 81 SG B ? A CYS 25 A CYS 80 1_555 ? ? ? ? ? ? ? 2.025 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 18 A . ? ASN 17 A GLY 19 A ? GLY 18 A 1 -2.64 2 HIS 32 A . ? HIS 31 A PRO 33 A ? PRO 32 A 1 -0.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 7 ? SER A 12 ? LYS A 6 SER A 11 A 2 ASN A 22 ? PHE A 31 ? ASN A 21 PHE A 30 A 3 SER A 62 ? PHE A 71 ? SER A 61 PHE A 70 A 4 HIS A 52 ? SER A 58 ? HIS A 51 SER A 57 B 1 GLU A 45 ? ARG A 46 ? GLU A 44 ARG A 45 B 2 GLU A 37 ? LYS A 42 ? GLU A 36 LYS A 41 B 3 TYR A 79 ? ASN A 84 ? TYR A 78 ASN A 83 B 4 LYS A 92 ? LYS A 95 ? LYS A 91 LYS A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 11 ? N TYR A 10 O ASN A 25 ? O ASN A 24 A 2 3 N CYS A 26 ? N CYS A 25 O TYR A 67 ? O TYR A 66 A 3 4 O SER A 62 ? O SER A 61 N SER A 58 ? N SER A 57 B 1 2 O GLU A 45 ? O GLU A 44 N LYS A 42 ? N LYS A 41 B 2 3 N LEU A 41 ? N LEU A 40 O ALA A 80 ? O ALA A 79 B 3 4 N CYS A 81 ? N CYS A 80 O VAL A 94 ? O VAL A 93 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLN A 9 ? GLN A 8 . ? 2_555 ? 2 AC1 2 TYR A 11 ? TYR A 10 . ? 2_555 ? 3 AC2 4 HIS A 85 ? HIS A 84 . ? 1_555 ? 4 AC2 4 VAL A 86 ? VAL A 85 . ? 1_555 ? 5 AC2 4 HOH D . ? HOH A 216 . ? 4_555 ? 6 AC2 4 HOH D . ? HOH A 239 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RMR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RMR _atom_sites.fract_transf_matrix[1][1] 0.019102 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000671 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034341 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014056 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ILE 2 1 1 ILE ILE A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 HIS 14 13 13 HIS HIS A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 CYS 26 25 25 CYS CYS A . n A 1 27 TYR 27 26 26 TYR TYR A . n A 1 28 VAL 28 27 27 VAL VAL A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 TRP 61 60 60 TRP TRP A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 TYR 64 63 63 TYR TYR A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 TYR 67 66 66 TYR TYR A . n A 1 68 TYR 68 67 67 TYR TYR A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLN 90 89 89 GLN GLN A . n A 1 91 PRO 91 90 90 PRO PRO A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 TRP 96 95 95 TRP TRP A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 MET 100 99 99 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 101 1 PEG PEG A . C 3 ACT 1 102 1 ACT ACT A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 2 HOH HOH A . D 4 HOH 3 203 3 HOH HOH A . D 4 HOH 4 204 4 HOH HOH A . D 4 HOH 5 205 5 HOH HOH A . D 4 HOH 6 206 6 HOH HOH A . D 4 HOH 7 207 7 HOH HOH A . D 4 HOH 8 208 8 HOH HOH A . D 4 HOH 9 209 9 HOH HOH A . D 4 HOH 10 210 10 HOH HOH A . D 4 HOH 11 211 11 HOH HOH A . D 4 HOH 12 212 12 HOH HOH A . D 4 HOH 13 213 13 HOH HOH A . D 4 HOH 14 214 14 HOH HOH A . D 4 HOH 15 215 15 HOH HOH A . D 4 HOH 16 216 16 HOH HOH A . D 4 HOH 17 217 17 HOH HOH A . D 4 HOH 18 218 18 HOH HOH A . D 4 HOH 19 219 19 HOH HOH A . D 4 HOH 20 220 20 HOH HOH A . D 4 HOH 21 221 21 HOH HOH A . D 4 HOH 22 222 22 HOH HOH A . D 4 HOH 23 223 23 HOH HOH A . D 4 HOH 24 224 24 HOH HOH A . D 4 HOH 25 225 25 HOH HOH A . D 4 HOH 26 226 26 HOH HOH A . D 4 HOH 27 227 27 HOH HOH A . D 4 HOH 28 228 28 HOH HOH A . D 4 HOH 29 229 29 HOH HOH A . D 4 HOH 30 230 30 HOH HOH A . D 4 HOH 31 231 31 HOH HOH A . D 4 HOH 32 232 33 HOH HOH A . D 4 HOH 33 233 34 HOH HOH A . D 4 HOH 34 234 35 HOH HOH A . D 4 HOH 35 235 38 HOH HOH A . D 4 HOH 36 236 39 HOH HOH A . D 4 HOH 37 237 40 HOH HOH A . D 4 HOH 38 238 41 HOH HOH A . D 4 HOH 39 239 42 HOH HOH A . D 4 HOH 40 240 43 HOH HOH A . D 4 HOH 41 241 44 HOH HOH A . D 4 HOH 42 242 45 HOH HOH A . D 4 HOH 43 243 46 HOH HOH A . D 4 HOH 44 244 47 HOH HOH A . D 4 HOH 45 245 48 HOH HOH A . D 4 HOH 46 246 49 HOH HOH A . D 4 HOH 47 247 50 HOH HOH A . D 4 HOH 48 248 51 HOH HOH A . D 4 HOH 49 249 52 HOH HOH A . D 4 HOH 50 250 53 HOH HOH A . D 4 HOH 51 251 54 HOH HOH A . D 4 HOH 52 252 55 HOH HOH A . D 4 HOH 53 253 56 HOH HOH A . D 4 HOH 54 254 57 HOH HOH A . D 4 HOH 55 255 58 HOH HOH A . D 4 HOH 56 256 59 HOH HOH A . D 4 HOH 57 257 60 HOH HOH A . D 4 HOH 58 258 61 HOH HOH A . D 4 HOH 59 259 62 HOH HOH A . D 4 HOH 60 260 63 HOH HOH A . D 4 HOH 61 261 64 HOH HOH A . D 4 HOH 62 262 65 HOH HOH A . D 4 HOH 63 263 66 HOH HOH A . D 4 HOH 64 264 67 HOH HOH A . D 4 HOH 65 265 68 HOH HOH A . D 4 HOH 66 266 69 HOH HOH A . D 4 HOH 67 267 70 HOH HOH A . D 4 HOH 68 268 71 HOH HOH A . D 4 HOH 69 269 72 HOH HOH A . D 4 HOH 70 270 73 HOH HOH A . D 4 HOH 71 271 74 HOH HOH A . D 4 HOH 72 272 75 HOH HOH A . D 4 HOH 73 273 76 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-18 2 'Structure model' 1 1 2015-12-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 8.7648 -20.9658 10.7125 0.1104 0.2153 0.2536 0.0043 -0.0170 -0.0016 0.0938 5.2241 4.7632 -0.2507 -0.1199 -5.0892 0.1263 0.1229 0.0055 -0.5637 0.0909 0.1622 1.1064 0.0105 -0.2783 'X-RAY DIFFRACTION' 2 ? refined 6.8379 -10.6500 -13.4755 0.2024 0.5718 0.2565 -0.0925 -0.0415 0.0278 5.1659 6.8725 6.8955 1.0685 -4.6222 -0.0684 0.1097 0.8295 0.0500 -0.9707 0.0194 0.6135 -0.9700 0.7145 -0.0715 'X-RAY DIFFRACTION' 3 ? refined 11.2410 -13.2736 5.2253 0.1542 0.1617 0.2118 0.0082 -0.0063 -0.0177 1.6042 1.3782 6.0937 -0.3374 1.7045 -1.5949 0.1142 0.2226 -0.0140 -0.0862 0.0976 -0.0085 -0.0498 0.3271 -0.1959 'X-RAY DIFFRACTION' 4 ? refined 19.5191 -7.1684 -1.3866 0.3620 0.7480 0.3745 -0.1060 0.0109 -0.0490 8.5706 8.1583 7.0505 -5.4961 -7.0745 6.0908 0.5207 -0.3877 0.7656 0.0157 0.1486 -0.8657 -0.7907 2.0477 -0.4733 'X-RAY DIFFRACTION' 5 ? refined 8.1531 -11.9429 4.1773 0.1364 0.1292 0.1988 -0.0146 -0.0391 -0.0102 6.6405 1.3630 6.5027 0.8285 -3.9564 -1.0748 0.1052 0.2705 -0.0878 -0.0133 -0.0529 0.0591 -0.0189 0.0178 -0.0424 'X-RAY DIFFRACTION' 6 ? refined 18.0549 -18.6291 7.7215 0.1621 0.2485 0.2760 0.0351 0.0057 -0.0098 1.8801 3.1546 7.9070 -1.2453 2.3337 -4.6474 -0.0064 0.1703 -0.0865 -0.1038 -0.1689 -0.1836 0.1017 0.4479 0.2731 'X-RAY DIFFRACTION' 7 ? refined 14.1083 -20.6027 -4.8489 0.4694 0.2882 0.3058 0.0601 -0.0175 -0.1086 6.3315 7.7625 5.9706 -1.6184 0.1276 -1.4855 0.8630 0.9957 -0.9819 -1.2003 -0.3485 0.2413 2.7102 0.5663 -0.5685 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 0 through 11 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 12 through 19 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 20 through 41 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 42 through 50 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 51 through 77 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 78 through 90 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 91 through 98 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 PHENIX refinement '(phenix.refine: 1.8.4_1496)' ? 2 MxCuBE 'data collection' . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 232 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 262 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 80 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 80 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.944 _pdbx_validate_rmsd_bond.bond_target_value 1.818 _pdbx_validate_rmsd_bond.bond_deviation 0.126 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.017 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 60 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 66.07 _pdbx_validate_torsion.psi 62.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 99 ? CG ? A MET 100 CG 2 1 Y 1 A MET 99 ? SD ? A MET 100 SD 3 1 Y 1 A MET 99 ? CE ? A MET 100 CE # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'ACETATE ION' ACT 4 water HOH #