HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-OCT-14 4RMZ TITLE CRYSTAL STRUCTURE OF IRAK-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 154-460; COMPND 5 SYNONYM: IRAK-4, RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.JOHNSTONE,A.SUDOM,J.LIU,N.P.WALKER,Z.WANG REVDAT 2 23-MAR-16 4RMZ 1 HET HETATM HETNAM SOURCE REVDAT 2 2 1 REMARK SITE REVDAT 1 13-JAN-16 4RMZ 0 JRNL AUTH S.JOHNSTONE,A.SUDOM,J.LIU,N.P.WALKER,Z.WANG JRNL TITL CRYSTAL STRUCTURES OF IRAK-4 KINASE IN COMPLEX WITH JRNL TITL 2 INHIBITORS: A SERINE/THREONINE KINASE WITH TYROSINE AS A JRNL TITL 3 GATEKEEPER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.44000 REMARK 3 B22 (A**2) : 5.25000 REMARK 3 B33 (A**2) : -2.81000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4659 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4374 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6293 ; 1.438 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10108 ; 0.802 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;36.569 ;25.493 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 835 ;16.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5198 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 984 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 2.616 ; 4.051 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2279 ; 2.616 ; 4.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2840 ; 4.185 ; 6.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2841 ; 4.199 ; 6.045 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2379 ; 2.679 ; 4.392 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2351 ; 2.673 ; 4.419 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3379 ; 4.414 ; 6.481 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5464 ; 6.898 ;32.330 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5339 ; 6.929 ;32.103 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB087546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 63 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6 - 2.9 M AMMONIUM SULFATE, PH 6.4- REMARK 280 7.9 , EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.46000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.46000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.40500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.86500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.40500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 652 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 ALA B 217 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 TPO B 342 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 620 O HOH A 620 4585 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 174 -71.12 -43.45 REMARK 500 ASN A 175 -71.54 -35.41 REMARK 500 PHE A 180 67.17 34.11 REMARK 500 ASN A 206 46.91 72.86 REMARK 500 ASN A 207 -10.25 65.95 REMARK 500 ASP A 256 -2.41 73.43 REMARK 500 ARG A 310 0.08 82.53 REMARK 500 ASP A 311 53.32 -153.56 REMARK 500 ASP A 320 -160.57 -100.41 REMARK 500 ASP A 329 84.50 71.61 REMARK 500 LYS A 417 39.49 -79.54 REMARK 500 ARG B 310 -11.53 81.38 REMARK 500 ASP B 311 56.16 -140.70 REMARK 500 ASP B 329 81.30 67.71 REMARK 500 ASP B 405 73.73 -104.21 REMARK 500 GLU B 406 66.51 -36.86 REMARK 500 LYS B 417 32.40 -77.41 REMARK 500 MET B 457 -38.49 -34.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T20 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T20 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NRU RELATED DB: PDB REMARK 900 RELATED ID: 2NRY RELATED DB: PDB DBREF 4RMZ A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 4RMZ B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQRES 1 A 307 GLU ASN LYS SER LEU GLU VAL SER ASP THR ARG PHE HIS SEQRES 2 A 307 SER PHE SER PHE TYR GLU LEU LYS ASN VAL THR ASN ASN SEQRES 3 A 307 PHE ASP GLU ARG PRO ILE SER VAL GLY GLY ASN LYS MET SEQRES 4 A 307 GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS GLY TYR VAL SEQRES 5 A 307 ASN ASN THR THR VAL ALA VAL LYS LYS LEU ALA ALA MET SEQRES 6 A 307 VAL ASP ILE THR THR GLU GLU LEU LYS GLN GLN PHE ASP SEQRES 7 A 307 GLN GLU ILE LYS VAL MET ALA LYS CYS GLN HIS GLU ASN SEQRES 8 A 307 LEU VAL GLU LEU LEU GLY PHE SER SER ASP GLY ASP ASP SEQRES 9 A 307 LEU CYS LEU VAL TYR VAL TYR MET PRO ASN GLY SER LEU SEQRES 10 A 307 LEU ASP ARG LEU SER CYS LEU ASP GLY THR PRO PRO LEU SEQRES 11 A 307 SER TRP HIS MET ARG CYS LYS ILE ALA GLN GLY ALA ALA SEQRES 12 A 307 ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS HIS ILE HIS SEQRES 13 A 307 ARG ASP ILE LYS SER ALA ASN ILE LEU LEU ASP GLU ALA SEQRES 14 A 307 PHE THR ALA LYS ILE SER ASP PHE GLY LEU ALA ARG ALA SEQRES 15 A 307 SER GLU LYS PHE ALA GLN TPO VAL MET TPO SEP ARG ILE SEQRES 16 A 307 VAL GLY THR THR ALA TYR MET ALA PRO GLU ALA LEU ARG SEQRES 17 A 307 GLY GLU ILE THR PRO LYS SER ASP ILE TYR SER PHE GLY SEQRES 18 A 307 VAL VAL LEU LEU GLU ILE ILE THR GLY LEU PRO ALA VAL SEQRES 19 A 307 ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU ASP ILE LYS SEQRES 20 A 307 GLU GLU ILE GLU ASP GLU GLU LYS THR ILE GLU ASP TYR SEQRES 21 A 307 ILE ASP LYS LYS MET ASN ASP ALA ASP SER THR SER VAL SEQRES 22 A 307 GLU ALA MET TYR SER VAL ALA SER GLN CYS LEU HIS GLU SEQRES 23 A 307 LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS VAL GLN GLN SEQRES 24 A 307 LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 307 GLU ASN LYS SER LEU GLU VAL SER ASP THR ARG PHE HIS SEQRES 2 B 307 SER PHE SER PHE TYR GLU LEU LYS ASN VAL THR ASN ASN SEQRES 3 B 307 PHE ASP GLU ARG PRO ILE SER VAL GLY GLY ASN LYS MET SEQRES 4 B 307 GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS GLY TYR VAL SEQRES 5 B 307 ASN ASN THR THR VAL ALA VAL LYS LYS LEU ALA ALA MET SEQRES 6 B 307 VAL ASP ILE THR THR GLU GLU LEU LYS GLN GLN PHE ASP SEQRES 7 B 307 GLN GLU ILE LYS VAL MET ALA LYS CYS GLN HIS GLU ASN SEQRES 8 B 307 LEU VAL GLU LEU LEU GLY PHE SER SER ASP GLY ASP ASP SEQRES 9 B 307 LEU CYS LEU VAL TYR VAL TYR MET PRO ASN GLY SER LEU SEQRES 10 B 307 LEU ASP ARG LEU SER CYS LEU ASP GLY THR PRO PRO LEU SEQRES 11 B 307 SER TRP HIS MET ARG CYS LYS ILE ALA GLN GLY ALA ALA SEQRES 12 B 307 ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS HIS ILE HIS SEQRES 13 B 307 ARG ASP ILE LYS SER ALA ASN ILE LEU LEU ASP GLU ALA SEQRES 14 B 307 PHE THR ALA LYS ILE SER ASP PHE GLY LEU ALA ARG ALA SEQRES 15 B 307 SER GLU LYS PHE ALA GLN TPO VAL MET TPO SEP ARG ILE SEQRES 16 B 307 VAL GLY THR THR ALA TYR MET ALA PRO GLU ALA LEU ARG SEQRES 17 B 307 GLY GLU ILE THR PRO LYS SER ASP ILE TYR SER PHE GLY SEQRES 18 B 307 VAL VAL LEU LEU GLU ILE ILE THR GLY LEU PRO ALA VAL SEQRES 19 B 307 ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU ASP ILE LYS SEQRES 20 B 307 GLU GLU ILE GLU ASP GLU GLU LYS THR ILE GLU ASP TYR SEQRES 21 B 307 ILE ASP LYS LYS MET ASN ASP ALA ASP SER THR SER VAL SEQRES 22 B 307 GLU ALA MET TYR SER VAL ALA SER GLN CYS LEU HIS GLU SEQRES 23 B 307 LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS VAL GLN GLN SEQRES 24 B 307 LEU LEU GLN GLU MET THR ALA SER MODRES 4RMZ TPO A 342 THR PHOSPHOTHREONINE MODRES 4RMZ TPO A 345 THR PHOSPHOTHREONINE MODRES 4RMZ SEP A 346 SER PHOSPHOSERINE MODRES 4RMZ TPO B 345 THR PHOSPHOTHREONINE MODRES 4RMZ SEP B 346 SER PHOSPHOSERINE HET TPO A 342 11 HET TPO A 345 11 HET SEP A 346 10 HET TPO B 345 11 HET SEP B 346 10 HET T20 A 501 34 HET T20 B 501 34 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM T20 3-NITRO-N-[1-PHENYL-5-(PIPERIDIN-1-YLMETHYL)-1H- HETNAM 2 T20 BENZIMIDAZOL-2-YL]BENZAMIDE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 3(C4 H10 N O6 P) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 T20 2(C26 H25 N5 O3) FORMUL 5 HOH *150(H2 O) HELIX 1 1 SER A 169 THR A 177 1 9 HELIX 2 2 PRO A 184 GLY A 188 5 5 HELIX 3 3 THR A 222 CYS A 240 1 19 HELIX 4 4 SER A 269 CYS A 276 1 8 HELIX 5 5 LEU A 277 THR A 280 5 4 HELIX 6 6 SER A 284 ASN A 305 1 22 HELIX 7 7 LYS A 313 ALA A 315 5 3 HELIX 8 8 THR A 351 MET A 355 5 5 HELIX 9 9 ALA A 356 ARG A 361 1 6 HELIX 10 10 THR A 365 GLY A 383 1 19 HELIX 11 11 LEU A 395 ASP A 405 1 11 HELIX 12 12 THR A 409 TYR A 413 5 5 HELIX 13 13 ASP A 422 LEU A 437 1 16 HELIX 14 14 LYS A 440 ARG A 444 5 5 HELIX 15 15 ASP A 446 MET A 457 1 12 HELIX 16 16 SER B 169 THR B 177 1 9 HELIX 17 17 THR B 222 CYS B 240 1 19 HELIX 18 18 SER B 269 CYS B 276 1 8 HELIX 19 19 LEU B 277 THR B 280 5 4 HELIX 20 20 SER B 284 ASN B 305 1 22 HELIX 21 21 LYS B 313 ALA B 315 5 3 HELIX 22 22 THR B 351 MET B 355 5 5 HELIX 23 23 ALA B 356 ARG B 361 1 6 HELIX 24 24 PRO B 366 GLY B 383 1 18 HELIX 25 25 LEU B 397 ASP B 405 1 9 HELIX 26 26 THR B 409 TYR B 413 5 5 HELIX 27 27 ASP B 422 LEU B 437 1 16 HELIX 28 28 LYS B 440 ARG B 444 5 5 HELIX 29 29 ASP B 446 THR B 458 1 13 SHEET 1 A 6 HIS A 166 PHE A 168 0 SHEET 2 A 6 LEU A 248 SER A 252 1 O PHE A 251 N PHE A 168 SHEET 3 A 6 CYS A 259 VAL A 263 -1 O VAL A 261 N GLY A 250 SHEET 4 A 6 THR A 208 LEU A 215 -1 N ALA A 211 O TYR A 262 SHEET 5 A 6 GLY A 198 VAL A 205 -1 N GLY A 203 O VAL A 210 SHEET 6 A 6 LYS A 191 GLU A 194 -1 N MET A 192 O VAL A 200 SHEET 1 B 2 HIS A 307 ILE A 308 0 SHEET 2 B 2 ARG A 334 ALA A 335 -1 O ARG A 334 N ILE A 308 SHEET 1 C 2 ILE A 317 LEU A 319 0 SHEET 2 C 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 D 2 VAL A 343 MET A 344 0 SHEET 2 D 2 GLU A 363 ILE A 364 -1 O ILE A 364 N VAL A 343 SHEET 1 E 6 HIS B 166 SER B 167 0 SHEET 2 E 6 LEU B 248 SER B 252 1 O LEU B 249 N HIS B 166 SHEET 3 E 6 CYS B 259 VAL B 263 -1 O VAL B 261 N LEU B 249 SHEET 4 E 6 THR B 208 LEU B 215 -1 N LYS B 213 O LEU B 260 SHEET 5 E 6 GLY B 198 VAL B 205 -1 N TYR B 201 O VAL B 212 SHEET 6 E 6 LYS B 191 GLU B 194 -1 N GLY B 193 O VAL B 200 SHEET 1 F 2 HIS B 307 ILE B 308 0 SHEET 2 F 2 ARG B 334 ALA B 335 -1 O ARG B 334 N ILE B 308 SHEET 1 G 2 ILE B 317 LEU B 319 0 SHEET 2 G 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK C GLN A 341 N TPO A 342 1555 1555 1.34 LINK C TPO A 342 N VAL A 343 1555 1555 1.33 LINK C MET A 344 N TPO A 345 1555 1555 1.33 LINK C TPO A 345 N SEP A 346 1555 1555 1.33 LINK C SEP A 346 N ARG A 347 1555 1555 1.33 LINK C MET B 344 N TPO B 345 1555 1555 1.34 LINK C TPO B 345 N SEP B 346 1555 1555 1.33 LINK C SEP B 346 N ARG B 347 1555 1555 1.33 CISPEP 1 GLU A 392 PRO A 393 0 -3.28 CISPEP 2 GLU B 392 PRO B 393 0 -10.73 SITE 1 AC1 15 ILE A 185 MET A 192 VAL A 200 ALA A 211 SITE 2 AC1 15 LYS A 213 TYR A 262 VAL A 263 TYR A 264 SITE 3 AC1 15 MET A 265 PRO A 266 GLY A 268 ARG A 273 SITE 4 AC1 15 THR A 280 LEU A 318 HOH A 638 SITE 1 AC2 11 MET B 192 VAL B 200 ALA B 211 LYS B 213 SITE 2 AC2 11 TYR B 262 VAL B 263 TYR B 264 MET B 265 SITE 3 AC2 11 PRO B 266 THR B 280 LEU B 318 CRYST1 87.730 116.810 140.920 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007096 0.00000