HEADER HYDROLASE 23-OCT-14 4RNC TITLE CRYSTAL STRUCTURE OF AN ESTERASE RHEST1 FROM RHODOCOCCUS SP. ECU1013 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP. ECU1013; SOURCE 3 ORGANISM_TAXID: 1213589; SOURCE 4 STRAIN: ECU1013 ISOLATED FROM SOIL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS ALPHA/BETA HYDROLASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DOU,X.D.KONG,J.H.XU,J.ZHOU REVDAT 4 28-FEB-24 4RNC 1 REMARK REVDAT 3 22-NOV-17 4RNC 1 REMARK REVDAT 2 25-NOV-15 4RNC 1 SOURCE REVDAT 1 28-OCT-15 4RNC 0 JRNL AUTH Z.J.LUAN,F.L LI,S.DOU,Q.CHEN,X.D.KONG,J.ZHOU,H.L.YU,J.H.XU JRNL TITL SUBSTRATE CHANNEL EVOLUTION OF AN ESTERASE FOR THE SYNTHESIS JRNL TITL 2 OF CILASTATIN JRNL REF CATALYSIS SCIENCE AND V. 5 2622 2015 JRNL REF 2 TECHNOLOGY JRNL REFN ISSN 2044-4753 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 597 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6195 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5811 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8430 ; 1.692 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13317 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 828 ; 6.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;32.032 ;23.253 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 900 ;14.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 948 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7224 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1407 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3321 ; 2.777 ; 3.243 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3320 ; 2.777 ; 3.241 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4146 ; 3.727 ; 4.848 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4RNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M NA/K PHOSPHATE, 0.1M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.46300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.69150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.46300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.69150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -21.11221 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.50968 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LEU A 282 REMARK 465 GLU A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 LYS B 276 REMARK 465 LEU B 277 REMARK 465 ALA B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 ALA B 281 REMARK 465 LEU B 282 REMARK 465 GLU B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 MET C -20 REMARK 465 GLY C -19 REMARK 465 SER C -18 REMARK 465 SER C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 VAL C -6 REMARK 465 PRO C -5 REMARK 465 ARG C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 LYS C 276 REMARK 465 LEU C 277 REMARK 465 ALA C 278 REMARK 465 GLY C 279 REMARK 465 ALA C 280 REMARK 465 ALA C 281 REMARK 465 LEU C 282 REMARK 465 GLU C 283 REMARK 465 HIS C 284 REMARK 465 HIS C 285 REMARK 465 HIS C 286 REMARK 465 HIS C 287 REMARK 465 HIS C 288 REMARK 465 HIS C 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 101 P PO4 B 301 1.68 REMARK 500 OG SER A 101 P PO4 A 301 1.71 REMARK 500 OG SER C 101 P PO4 C 301 1.85 REMARK 500 O HOH A 435 O HOH A 620 2.05 REMARK 500 O HOH C 403 O HOH C 498 2.07 REMARK 500 NH1 ARG A 211 O HOH A 507 2.10 REMARK 500 O HOH C 403 O HOH C 520 2.13 REMARK 500 O GLU B 89 O HOH B 519 2.14 REMARK 500 OD1 ASN A 21 O HOH A 461 2.15 REMARK 500 OH TYR B 187 O HOH B 482 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 192 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 192 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 196 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 196 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 211 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 192 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 -156.40 -122.08 REMARK 500 SER A 101 -115.22 52.02 REMARK 500 LYS A 242 41.36 -102.23 REMARK 500 ASN A 252 -142.02 -92.44 REMARK 500 ASP A 259 78.84 -151.34 REMARK 500 GLN B 35 -160.11 -122.71 REMARK 500 SER B 101 -108.64 49.26 REMARK 500 PRO B 173 -73.81 -41.57 REMARK 500 LYS B 242 50.55 -102.44 REMARK 500 ASN B 252 -136.81 -93.82 REMARK 500 LEU B 274 44.14 -66.06 REMARK 500 GLN C 35 -160.60 -115.95 REMARK 500 SER C 101 -111.54 52.62 REMARK 500 ARG C 145 41.13 -107.61 REMARK 500 PRO C 149 -72.78 -55.91 REMARK 500 LYS C 242 47.59 -109.02 REMARK 500 ASN C 252 -138.68 -95.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C 143 MET C 144 -148.93 REMARK 500 ARG C 145 SER C 146 141.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 A 301 REMARK 610 PO4 B 301 REMARK 610 PO4 C 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 301 DBREF 4RNC A -20 289 PDB 4RNC 4RNC -20 289 DBREF 4RNC B -20 289 PDB 4RNC 4RNC -20 289 DBREF 4RNC C -20 289 PDB 4RNC 4RNC -20 289 SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET MET SER ILE ARG GLU SEQRES 3 A 310 ALA VAL SER VAL ASP GLY THR SER ILE VAL TYR ARG VAL SEQRES 4 A 310 THR GLY ASN SER ALA GLY THR PRO LEU VAL LEU LEU HIS SEQRES 5 A 310 GLY TRP ALA GLN SER SER GLN CYS TRP GLY GLU GLN VAL SEQRES 6 A 310 LEU ALA ASP LEU ALA ALA ASP TYR ARG LEU ILE ALA VAL SEQRES 7 A 310 ASP LEU ARG GLY HIS GLY TYR SER ASP ALA PRO GLU SER SEQRES 8 A 310 GLY TYR ASP ASP SER ALA ASN TRP ALA GLY ASP VAL ALA SEQRES 9 A 310 ALA VAL LEU ALA ALA GLU GLY VAL THR GLU ASN ALA ILE SEQRES 10 A 310 LEU LEU GLY TRP SER TYR GLY GLY LEU VAL ILE CYS ASP SEQRES 11 A 310 TYR LEU ALA ALA HIS GLY THR GLY ALA VAL ALA GLY ALA SEQRES 12 A 310 VAL LEU VAL GLY ALA ILE THR SER ILE GLY ARG GLY GLU SEQRES 13 A 310 LYS GLY GLY LYS VAL GLY SER ALA MET ARG SER ALA VAL SEQRES 14 A 310 PRO GLY ALA MET SER GLU ASP PRO ARG GLU ALA ILE ARG SEQRES 15 A 310 ALA LEU GLY ALA PHE GLY ASN ALA LEU THR GLY PRO PRO SEQRES 16 A 310 GLU GLY LYS GLY ALA ALA SER GLN ALA LEU PHE GLY TYR SEQRES 17 A 310 SER LEU SER THR ARG PRO ARG VAL ARG ALA ALA LEU PHE SEQRES 18 A 310 ASN ARG ALA VAL GLY HIS ASP GLU LEU LEU ARG ASN LEU SEQRES 19 A 310 ASP ILE PRO VAL LEU VAL LEU HIS GLY THR ASP ASP SER SEQRES 20 A 310 VAL VAL ASP VAL SER ALA GLY LYS HIS ALA GLU GLU LEU SEQRES 21 A 310 ILE PRO LYS SER GLN ALA SER TYR TRP VAL GLY CYS ASN SEQRES 22 A 310 HIS GLY PRO PHE VAL GLU ASP PRO THR ARG PHE VAL SER SEQRES 23 A 310 GLU VAL ARG THR PHE ILE SER SER LEU GLY LYS LEU ALA SEQRES 24 A 310 GLY ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 310 LEU VAL PRO ARG GLY SER HIS MET MET SER ILE ARG GLU SEQRES 3 B 310 ALA VAL SER VAL ASP GLY THR SER ILE VAL TYR ARG VAL SEQRES 4 B 310 THR GLY ASN SER ALA GLY THR PRO LEU VAL LEU LEU HIS SEQRES 5 B 310 GLY TRP ALA GLN SER SER GLN CYS TRP GLY GLU GLN VAL SEQRES 6 B 310 LEU ALA ASP LEU ALA ALA ASP TYR ARG LEU ILE ALA VAL SEQRES 7 B 310 ASP LEU ARG GLY HIS GLY TYR SER ASP ALA PRO GLU SER SEQRES 8 B 310 GLY TYR ASP ASP SER ALA ASN TRP ALA GLY ASP VAL ALA SEQRES 9 B 310 ALA VAL LEU ALA ALA GLU GLY VAL THR GLU ASN ALA ILE SEQRES 10 B 310 LEU LEU GLY TRP SER TYR GLY GLY LEU VAL ILE CYS ASP SEQRES 11 B 310 TYR LEU ALA ALA HIS GLY THR GLY ALA VAL ALA GLY ALA SEQRES 12 B 310 VAL LEU VAL GLY ALA ILE THR SER ILE GLY ARG GLY GLU SEQRES 13 B 310 LYS GLY GLY LYS VAL GLY SER ALA MET ARG SER ALA VAL SEQRES 14 B 310 PRO GLY ALA MET SER GLU ASP PRO ARG GLU ALA ILE ARG SEQRES 15 B 310 ALA LEU GLY ALA PHE GLY ASN ALA LEU THR GLY PRO PRO SEQRES 16 B 310 GLU GLY LYS GLY ALA ALA SER GLN ALA LEU PHE GLY TYR SEQRES 17 B 310 SER LEU SER THR ARG PRO ARG VAL ARG ALA ALA LEU PHE SEQRES 18 B 310 ASN ARG ALA VAL GLY HIS ASP GLU LEU LEU ARG ASN LEU SEQRES 19 B 310 ASP ILE PRO VAL LEU VAL LEU HIS GLY THR ASP ASP SER SEQRES 20 B 310 VAL VAL ASP VAL SER ALA GLY LYS HIS ALA GLU GLU LEU SEQRES 21 B 310 ILE PRO LYS SER GLN ALA SER TYR TRP VAL GLY CYS ASN SEQRES 22 B 310 HIS GLY PRO PHE VAL GLU ASP PRO THR ARG PHE VAL SER SEQRES 23 B 310 GLU VAL ARG THR PHE ILE SER SER LEU GLY LYS LEU ALA SEQRES 24 B 310 GLY ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 310 LEU VAL PRO ARG GLY SER HIS MET MET SER ILE ARG GLU SEQRES 3 C 310 ALA VAL SER VAL ASP GLY THR SER ILE VAL TYR ARG VAL SEQRES 4 C 310 THR GLY ASN SER ALA GLY THR PRO LEU VAL LEU LEU HIS SEQRES 5 C 310 GLY TRP ALA GLN SER SER GLN CYS TRP GLY GLU GLN VAL SEQRES 6 C 310 LEU ALA ASP LEU ALA ALA ASP TYR ARG LEU ILE ALA VAL SEQRES 7 C 310 ASP LEU ARG GLY HIS GLY TYR SER ASP ALA PRO GLU SER SEQRES 8 C 310 GLY TYR ASP ASP SER ALA ASN TRP ALA GLY ASP VAL ALA SEQRES 9 C 310 ALA VAL LEU ALA ALA GLU GLY VAL THR GLU ASN ALA ILE SEQRES 10 C 310 LEU LEU GLY TRP SER TYR GLY GLY LEU VAL ILE CYS ASP SEQRES 11 C 310 TYR LEU ALA ALA HIS GLY THR GLY ALA VAL ALA GLY ALA SEQRES 12 C 310 VAL LEU VAL GLY ALA ILE THR SER ILE GLY ARG GLY GLU SEQRES 13 C 310 LYS GLY GLY LYS VAL GLY SER ALA MET ARG SER ALA VAL SEQRES 14 C 310 PRO GLY ALA MET SER GLU ASP PRO ARG GLU ALA ILE ARG SEQRES 15 C 310 ALA LEU GLY ALA PHE GLY ASN ALA LEU THR GLY PRO PRO SEQRES 16 C 310 GLU GLY LYS GLY ALA ALA SER GLN ALA LEU PHE GLY TYR SEQRES 17 C 310 SER LEU SER THR ARG PRO ARG VAL ARG ALA ALA LEU PHE SEQRES 18 C 310 ASN ARG ALA VAL GLY HIS ASP GLU LEU LEU ARG ASN LEU SEQRES 19 C 310 ASP ILE PRO VAL LEU VAL LEU HIS GLY THR ASP ASP SER SEQRES 20 C 310 VAL VAL ASP VAL SER ALA GLY LYS HIS ALA GLU GLU LEU SEQRES 21 C 310 ILE PRO LYS SER GLN ALA SER TYR TRP VAL GLY CYS ASN SEQRES 22 C 310 HIS GLY PRO PHE VAL GLU ASP PRO THR ARG PHE VAL SER SEQRES 23 C 310 GLU VAL ARG THR PHE ILE SER SER LEU GLY LYS LEU ALA SEQRES 24 C 310 GLY ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PO4 A 301 4 HET PO4 B 301 4 HET PO4 C 301 4 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *597(H2 O) HELIX 1 1 GLY A 41 ALA A 50 1 10 HELIX 2 2 ASP A 74 GLU A 89 1 16 HELIX 3 3 TYR A 102 GLY A 115 1 14 HELIX 4 4 GLU A 135 LYS A 139 5 5 HELIX 5 5 GLY A 141 VAL A 148 1 8 HELIX 6 6 PRO A 149 SER A 153 5 5 HELIX 7 7 ASP A 155 ALA A 165 1 11 HELIX 8 8 LYS A 177 SER A 190 1 14 HELIX 9 9 ARG A 192 LEU A 199 1 8 HELIX 10 10 HIS A 206 LEU A 213 1 8 HELIX 11 11 ASP A 229 ILE A 240 1 12 HELIX 12 12 GLY A 254 ASP A 259 1 6 HELIX 13 13 ASP A 259 SER A 273 1 15 HELIX 14 14 LYS A 276 ALA A 281 1 6 HELIX 15 15 SER B 36 TRP B 40 5 5 HELIX 16 16 GLY B 41 TYR B 52 1 12 HELIX 17 17 ASP B 74 GLU B 89 1 16 HELIX 18 18 TYR B 102 GLY B 115 1 14 HELIX 19 19 GLU B 135 LYS B 139 5 5 HELIX 20 20 GLY B 141 ALA B 147 1 7 HELIX 21 21 PRO B 149 SER B 153 5 5 HELIX 22 22 ASP B 155 GLY B 172 1 18 HELIX 23 23 LYS B 177 THR B 191 1 15 HELIX 24 24 ARG B 192 ASN B 201 1 10 HELIX 25 25 HIS B 206 ARG B 211 1 6 HELIX 26 26 ASP B 229 ILE B 240 1 12 HELIX 27 27 GLY B 254 ASP B 259 1 6 HELIX 28 28 ASP B 259 LEU B 274 1 16 HELIX 29 29 GLY C 41 TYR C 52 1 12 HELIX 30 30 ASP C 74 GLU C 89 1 16 HELIX 31 31 TYR C 102 GLY C 115 1 14 HELIX 32 32 GLU C 135 LYS C 139 5 5 HELIX 33 33 ALA C 143 VAL C 148 1 6 HELIX 34 34 PRO C 149 SER C 153 5 5 HELIX 35 35 ASP C 155 GLY C 172 1 18 HELIX 36 36 LYS C 177 SER C 190 1 14 HELIX 37 37 ARG C 192 LEU C 199 1 8 HELIX 38 38 HIS C 206 ARG C 211 1 6 HELIX 39 39 ASP C 229 ILE C 240 1 12 HELIX 40 40 GLY C 254 ASP C 259 1 6 HELIX 41 41 ASP C 259 LEU C 274 1 16 SHEET 1 A 8 ILE A 3 VAL A 7 0 SHEET 2 A 8 SER A 13 GLY A 20 -1 O ILE A 14 N ALA A 6 SHEET 3 A 8 TYR A 52 VAL A 57 -1 O ALA A 56 N ARG A 17 SHEET 4 A 8 THR A 25 LEU A 30 1 N LEU A 29 O ILE A 55 SHEET 5 A 8 ALA A 95 TRP A 100 1 O LEU A 98 N LEU A 30 SHEET 6 A 8 VAL A 119 VAL A 125 1 O VAL A 125 N GLY A 99 SHEET 7 A 8 VAL A 217 GLY A 222 1 O LEU A 218 N LEU A 124 SHEET 8 A 8 SER A 243 TRP A 248 1 O GLN A 244 N VAL A 219 SHEET 1 B 8 ILE B 3 VAL B 7 0 SHEET 2 B 8 SER B 13 THR B 19 -1 O ILE B 14 N ALA B 6 SHEET 3 B 8 ARG B 53 VAL B 57 -1 O ALA B 56 N ARG B 17 SHEET 4 B 8 PRO B 26 LEU B 30 1 N LEU B 29 O ILE B 55 SHEET 5 B 8 ALA B 95 TRP B 100 1 O ILE B 96 N VAL B 28 SHEET 6 B 8 VAL B 119 VAL B 125 1 O VAL B 125 N GLY B 99 SHEET 7 B 8 VAL B 217 GLY B 222 1 O LEU B 218 N LEU B 124 SHEET 8 B 8 SER B 243 TRP B 248 1 O GLN B 244 N VAL B 219 SHEET 1 C 8 ILE C 3 VAL C 7 0 SHEET 2 C 8 SER C 13 THR C 19 -1 O ILE C 14 N ALA C 6 SHEET 3 C 8 ARG C 53 VAL C 57 -1 O ALA C 56 N ARG C 17 SHEET 4 C 8 PRO C 26 LEU C 30 1 N LEU C 27 O ILE C 55 SHEET 5 C 8 ALA C 95 TRP C 100 1 O LEU C 98 N VAL C 28 SHEET 6 C 8 VAL C 119 VAL C 125 1 O VAL C 125 N GLY C 99 SHEET 7 C 8 VAL C 217 GLY C 222 1 O LEU C 218 N LEU C 124 SHEET 8 C 8 SER C 243 TRP C 248 1 O SER C 246 N VAL C 219 CISPEP 1 VAL A 148 PRO A 149 0 12.67 CISPEP 2 VAL B 148 PRO B 149 0 7.83 CISPEP 3 PRO B 173 PRO B 174 0 -15.49 SITE 1 AC1 6 TRP A 33 SER A 101 TYR A 102 ILE A 128 SITE 2 AC1 6 MET A 144 VAL A 227 SITE 1 AC2 6 TRP B 33 SER B 101 TYR B 102 ILE B 128 SITE 2 AC2 6 MET B 144 VAL B 227 SITE 1 AC3 5 GLY C 32 TRP C 33 SER C 101 TYR C 102 SITE 2 AC3 5 VAL C 227 CRYST1 212.926 45.383 77.443 90.00 105.82 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004696 0.000000 0.001330 0.00000 SCALE2 0.000000 0.022035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013421 0.00000