HEADER TRANSFERASE, HYDROLASE 24-OCT-14 4RNH TITLE PAMORA TANDEM DIGUANYLATE CYCLASE - PHOSPHODIESTERASE, C-DI-GMP TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTILITY REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GGDEF DOMAIN, EAL DOMAIN, UNP RESIDUES 978-1409; COMPND 5 EC: 2.7.7.65, 3.1.4.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: MORA, PA4601; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TANDEM GGDEF AND EAL DOMAIN, DIGUANYLATE CYCLASE, PHOSPHODIESTERASE, KEYWDS 2 GTP, C-DI-GMP, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.PHIPPEN,I.TEWS REVDAT 4 28-FEB-24 4RNH 1 REMARK SEQADV HETSYN LINK REVDAT 3 22-APR-15 4RNH 1 JRNL REVDAT 2 25-FEB-15 4RNH 1 COMPND REVDAT 1 19-NOV-14 4RNH 0 JRNL AUTH C.W.PHIPPEN,H.MIKOLAJEK,H.G.SCHLAEFLI,C.W.KEEVIL,J.S.WEBB, JRNL AUTH 2 I.TEWS JRNL TITL FORMATION AND DIMERIZATION OF THE PHOSPHODIESTERASE ACTIVE JRNL TITL 2 SITE OF THE PSEUDOMONAS AERUGINOSA MORA, A BI-FUNCTIONAL JRNL TITL 3 C-DI-GMP REGULATOR. JRNL REF FEBS LETT. V. 588 4631 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 25447517 JRNL DOI 10.1016/J.FEBSLET.2014.11.002 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.453 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3437 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3309 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4660 ; 1.566 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7579 ; 0.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 5.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.545 ;23.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 588 ;16.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3909 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 3.568 ; 4.695 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1699 ; 3.564 ; 4.692 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2125 ; 5.439 ; 7.030 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4RNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : FIXED MONOCHROMATOR 22M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 61.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM THIOCYANATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.40000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.40000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ACTIVE DIGUANYLATE CYCLASE AND ACTIVE PHOSPHODIESTERASE ARE REMARK 300 DIMERS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.70000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 957 REMARK 465 GLY A 958 REMARK 465 SER A 959 REMARK 465 SER A 960 REMARK 465 HIS A 961 REMARK 465 HIS A 962 REMARK 465 HIS A 963 REMARK 465 HIS A 964 REMARK 465 HIS A 965 REMARK 465 HIS A 966 REMARK 465 SER A 967 REMARK 465 SER A 968 REMARK 465 GLY A 969 REMARK 465 LEU A 970 REMARK 465 VAL A 971 REMARK 465 PRO A 972 REMARK 465 ARG A 973 REMARK 465 GLY A 974 REMARK 465 SER A 975 REMARK 465 HIS A 976 REMARK 465 LYS A 1021 REMARK 465 PRO A 1022 REMARK 465 ILE A 1023 REMARK 465 ASN A 1024 REMARK 465 ASP A 1025 REMARK 465 SER A 1026 REMARK 465 SER A 1406 REMARK 465 ASP A 1407 REMARK 465 VAL A 1408 REMARK 465 LEU A 1409 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1019 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1020 CG CD1 CD2 CE1 CE2 CZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1189 OE2 REMARK 620 2 ASN A1248 OD1 81.7 REMARK 620 3 GLU A1280 OE1 78.4 74.7 REMARK 620 4 ASP A1310 OD2 156.7 80.4 110.9 REMARK 620 5 C2E A1503 O2P 78.1 69.8 139.6 81.7 REMARK 620 6 HOH A1619 O 101.2 157.7 127.6 90.0 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1311 OD1 REMARK 620 2 C2E A1503 O1P 90.0 REMARK 620 3 HOH A1615 O 77.8 78.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 1503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RNF RELATED DB: PDB REMARK 900 RELATED ID: 4RNI RELATED DB: PDB REMARK 900 RELATED ID: 4RNJ RELATED DB: PDB DBREF 4RNH A 978 1409 UNP Q9HVI8 Q9HVI8_PSEAE 978 1409 SEQADV 4RNH MET A 957 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH GLY A 958 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH SER A 959 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH SER A 960 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 961 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 962 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 963 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 964 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 965 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 966 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH SER A 967 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH SER A 968 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH GLY A 969 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH LEU A 970 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH VAL A 971 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH PRO A 972 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH ARG A 973 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH GLY A 974 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH SER A 975 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH HIS A 976 UNP Q9HVI8 EXPRESSION TAG SEQADV 4RNH MET A 977 UNP Q9HVI8 EXPRESSION TAG SEQRES 1 A 453 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 453 LEU VAL PRO ARG GLY SER HIS MET ALA TYR TYR ASP ALA SEQRES 3 A 453 LEU THR HIS LEU PRO ASN ARG THR LEU PHE GLN ASP ARG SEQRES 4 A 453 LEU HIS THR ALA LEU GLN GLN ALA GLU ARG ASN GLY GLN SEQRES 5 A 453 TRP VAL VAL LEU MET PHE LEU ASP LEU ASP ARG PHE LYS SEQRES 6 A 453 PRO ILE ASN ASP SER LEU GLY HIS ALA ALA GLY ASP ARG SEQRES 7 A 453 MET LEU GLN GLU VAL ALA THR ARG LEU SER ALA CYS VAL SEQRES 8 A 453 SER GLN ASP ASP THR VAL ALA ARG MET GLY GLY ASP GLU SEQRES 9 A 453 PHE THR LEU LEU LEU PRO SER GLN GLY ASP ARG GLU ILE SEQRES 10 A 453 ALA LEU LYS ARG ALA ILE GLN VAL ALA GLU LEU ILE LEU SEQRES 11 A 453 GLY ARG LEU ALA ARG PRO PHE THR LEU GLU GLY ARG GLU SEQRES 12 A 453 PHE PHE VAL THR ALA SER ILE GLY VAL ALA LEU SER PRO SEQRES 13 A 453 GLN ASP GLY ALA GLU LEU SER LEU LEU MET LYS ASN ALA SEQRES 14 A 453 ASP THR ALA MET TYR HIS ALA LYS GLU MET GLY LYS ASN SEQRES 15 A 453 ASN PHE GLN PHE TYR GLN ALA GLU MET ASN ALA ARG ALA SEQRES 16 A 453 LEU GLU ARG LEU GLU LEU GLU SER ASP LEU ARG ARG ALA SEQRES 17 A 453 LEU GLU LEU GLY GLU PHE VAL LEU HIS TYR GLN PRO GLN SEQRES 18 A 453 PHE THR GLY ASP GLY ARG ARG LEU THR GLY ALA GLU ALA SEQRES 19 A 453 LEU LEU ARG TRP GLN HIS PRO ARG ARG GLY LEU VAL PRO SEQRES 20 A 453 PRO SER GLU PHE ILE PRO VAL LEU GLU GLU ILE GLY LEU SEQRES 21 A 453 VAL ALA GLN VAL GLY ASP TRP LEU LEU ALA GLU ALA CYS SEQRES 22 A 453 LYS GLN LEU ARG SER TRP HIS LYS ALA LYS VAL ARG VAL SEQRES 23 A 453 PRO LYS VAL SER VAL ASN LEU SER ALA ARG GLN PHE ALA SEQRES 24 A 453 ASP GLY GLN LEU GLY GLU ARG ILE ALA ALA ILE LEU TYR SEQRES 25 A 453 GLU THR GLY ILE PRO PRO ALA CYS LEU GLU LEU GLU LEU SEQRES 26 A 453 THR GLU SER ILE LEU MET SER ASP VAL ALA GLU ALA MET SEQRES 27 A 453 GLN ILE LEU SER GLY LEU LYS ARG LEU GLY LEU ALA ILE SEQRES 28 A 453 ALA VAL ASP ASP PHE GLY THR GLY TYR SER SER LEU ASN SEQRES 29 A 453 TYR LEU LYS GLN PHE PRO ILE ASP VAL LEU LYS ILE ASP SEQRES 30 A 453 ARG SER PHE VAL ASP GLY LEU PRO HIS GLY GLU GLN ASP SEQRES 31 A 453 ALA GLN ILE ALA ARG ALA ILE ILE ALA MET ALA HIS SER SEQRES 32 A 453 LEU ASN LEU MET VAL ILE ALA GLU GLY VAL GLU SER GLN SEQRES 33 A 453 ALA GLN LEU ASP PHE LEU ARG GLU HIS GLY CYS ASP GLU SEQRES 34 A 453 VAL GLN GLY TYR LEU PHE GLY ARG PRO MET PRO ALA GLU SEQRES 35 A 453 GLN PHE GLY MET LEU TYR ALA SER ASP VAL LEU HET MG A1501 1 HET MG A1502 1 HET C2E A1503 46 HETNAM MG MAGNESIUM ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 C2E C20 H24 N10 O14 P2 FORMUL 5 HOH *120(H2 O) HELIX 1 1 ASN A 988 GLY A 1007 1 20 HELIX 2 2 GLY A 1028 VAL A 1047 1 20 HELIX 3 3 ASP A 1070 ARG A 1091 1 22 HELIX 4 4 GLU A 1117 MET A 1135 1 19 HELIX 5 5 GLN A 1144 LEU A 1167 1 24 HELIX 6 6 PRO A 1203 GLU A 1213 1 11 HELIX 7 7 GLY A 1215 ALA A 1238 1 24 HELIX 8 8 SER A 1250 ASP A 1256 1 7 HELIX 9 9 GLN A 1258 GLY A 1271 1 14 HELIX 10 10 PRO A 1273 ALA A 1275 5 3 HELIX 11 11 GLU A 1283 SER A 1288 1 6 HELIX 12 12 ASP A 1289 LEU A 1303 1 15 HELIX 13 13 SER A 1318 PHE A 1325 1 8 HELIX 14 14 ASP A 1333 GLY A 1339 1 7 HELIX 15 15 GLY A 1343 LEU A 1360 1 18 HELIX 16 16 SER A 1371 HIS A 1381 1 11 HELIX 17 17 GLY A 1388 GLY A 1392 5 5 HELIX 18 18 PRO A 1396 TYR A 1404 1 9 SHEET 1 A 5 THR A1052 GLY A1057 0 SHEET 2 A 5 GLU A1060 GLN A1068 -1 O GLU A1060 N GLY A1057 SHEET 3 A 5 TRP A1009 ASP A1018 -1 N TRP A1009 O GLN A1068 SHEET 4 A 5 THR A1103 SER A1111 -1 O SER A1111 N VAL A1010 SHEET 5 A 5 ASN A1139 PHE A1142 1 O ASN A1139 N ILE A1106 SHEET 1 B10 GLY A1200 VAL A1202 0 SHEET 2 B10 LEU A1185 HIS A1196 -1 N HIS A1196 O GLY A1200 SHEET 3 B10 VAL A1245 ASN A1248 1 O SER A1246 N ALA A1190 SHEET 4 B10 LEU A1277 THR A1282 1 O GLU A1280 N VAL A1247 SHEET 5 B10 ALA A1306 PHE A1312 1 O ALA A1308 N LEU A1279 SHEET 6 B10 VAL A1329 ILE A1332 1 O VAL A1329 N VAL A1309 SHEET 7 B10 MET A1363 ALA A1366 1 O ILE A1365 N LEU A1330 SHEET 8 B10 GLU A1385 VAL A1386 1 O GLU A1385 N ALA A1366 SHEET 9 B10 PHE A1170 THR A1179 -1 N PHE A1178 O VAL A1386 SHEET 10 B10 LEU A1185 HIS A1196 -1 O GLU A1189 N GLN A1175 LINK OE2 GLU A1189 MG MG A1501 1555 1555 2.51 LINK OD1 ASN A1248 MG MG A1501 1555 1555 2.36 LINK OE1 GLU A1280 MG MG A1501 1555 1555 1.96 LINK OD2 ASP A1310 MG MG A1501 1555 1555 2.35 LINK OD1 ASP A1311 MG MG A1502 1555 1555 2.47 LINK MG MG A1501 O2P C2E A1503 1555 1555 2.06 LINK MG MG A1501 O HOH A1619 1555 1555 2.35 LINK MG MG A1502 O1P C2E A1503 1555 1555 2.26 LINK MG MG A1502 O HOH A1615 1555 1555 2.86 CISPEP 1 ARG A 1019 PHE A 1020 0 -4.02 CISPEP 2 SER A 1111 PRO A 1112 0 12.99 CISPEP 3 LEU A 1340 PRO A 1341 0 7.09 SITE 1 AC1 6 GLU A1189 ASN A1248 GLU A1280 ASP A1310 SITE 2 AC1 6 C2E A1503 HOH A1619 SITE 1 AC2 3 ASP A1311 C2E A1503 HOH A1615 SITE 1 AC3 24 GLN A1175 GLU A1189 LEU A1191 LEU A1192 SITE 2 AC3 24 ARG A1193 PRO A1204 LEU A1224 ASN A1248 SITE 3 AC3 24 GLN A1253 ASP A1310 ASP A1311 ARG A1334 SITE 4 AC3 24 GLU A1367 GLY A1368 GLU A1370 GLY A1388 SITE 5 AC3 24 TYR A1389 MG A1501 MG A1502 HOH A1613 SITE 6 AC3 24 HOH A1615 HOH A1619 HOH A1626 HOH A1720 CRYST1 81.300 81.300 128.100 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.007101 0.000000 0.00000 SCALE2 0.000000 0.014203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007806 0.00000