HEADER LYASE 27-OCT-14 4RO6 OBSLTE 09-SEP-15 4RO6 5D7Z TITLE CRYSTAL STRUCTURE OF GLYOXALASE I FROM ZEA MAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYOXALASE I; COMPND 5 EC: 4.4.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: GLXI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYOXALASE I, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ,G.L.TURRA,C.M.FAUGUEL,D.A.PRESELLO,C.S.ANDREO, AUTHOR 2 V.A.CAMPOS-BERMUDEZ REVDAT 2 09-SEP-15 4RO6 1 OBSLTE REVDAT 1 19-NOV-14 4RO6 0 JRNL AUTH J.M.GONZALEZ,G.L.TURRA,C.M.FAUGUEL,D.A.PRESELLO,C.S.ANDREO, JRNL AUTH 2 V.A.CAMPOS-BERMUDEZ JRNL TITL CRYSTAL STRUCTURE OF GLYOXALASE I FROM ZEA MAYS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.77000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2299 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2155 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3103 ; 2.026 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4963 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;37.462 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.950 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2603 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1 ;27.145 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB087587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 34.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, 1% PEG 4000, PH 9, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.35650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.35650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.35650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 15 CG1 CG2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 HIS A 296 CA C O CB CG ND1 CD2 REMARK 470 HIS A 296 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 294 O HOH A 536 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 153 CD GLU A 153 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 164 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 26 -61.36 -95.63 REMARK 500 LYS A 126 86.60 -6.19 REMARK 500 ALA A 223 -66.34 -101.20 REMARK 500 ALA A 225 -64.65 -94.97 REMARK 500 LEU A 253 -80.41 -98.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 5.39 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 309 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 290 NE2 REMARK 620 2 HIS A 295 NE2 91.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PE A 309 O13 REMARK 620 2 2PE A 309 O16 69.0 REMARK 620 3 2PE A 309 O10 70.9 139.7 REMARK 620 4 2PE A 309 O7 92.8 110.9 66.0 REMARK 620 5 HOH A 480 O 90.0 92.1 92.8 156.2 REMARK 620 6 2PE A 309 O19 132.7 65.7 149.4 90.6 104.7 REMARK 620 7 2PE A 309 O22 163.9 126.4 93.9 85.6 85.2 63.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 144 OE1 REMARK 620 2 GLU A 208 OE1 133.4 REMARK 620 3 GLN A 157 OE1 81.7 71.1 REMARK 620 4 HOH A 520 O 75.3 150.1 130.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 309 DBREF 4RO6 A 1 290 UNP C0PK05 C0PK05_MAIZE 1 290 SEQADV 4RO6 MET A -1 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 ALA A 0 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 LEU A 291 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 GLU A 292 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 293 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 294 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 295 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 296 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 297 UNP C0PK05 EXPRESSION TAG SEQADV 4RO6 HIS A 298 UNP C0PK05 EXPRESSION TAG SEQRES 1 A 300 MET ALA MET ALA THR GLY SER GLU ALA SER LYS ALA ALA SEQRES 2 A 300 GLU ALA VAL VAL ASP TRP HIS LYS HIS ASP SER LYS ARG SEQRES 3 A 300 MET LEU HIS ALA VAL TYR ARG VAL GLY ASP LEU ASP ARG SEQRES 4 A 300 THR ILE LYS TYR TYR THR GLU CYS PHE GLY MET LYS LEU SEQRES 5 A 300 LEU ARG LYS ARG ASP VAL PRO ASP GLU LYS TYR THR ASN SEQRES 6 A 300 ALA PHE LEU GLY PHE GLY PRO GLU ASN THR ASN PHE ALA SEQRES 7 A 300 VAL GLU LEU THR TYR ASN TYR GLY VAL ASP LYS TYR ASP SEQRES 8 A 300 ILE GLY THR GLY PHE GLY HIS PHE ALA ILE ALA ASN ASP SEQRES 9 A 300 ASP VAL TYR LYS LEU ALA GLU ASN ILE LYS SER LYS GLY SEQRES 10 A 300 GLY LYS ILE THR ARG GLU PRO GLY PRO VAL LYS GLY GLY SEQRES 11 A 300 SER THR VAL ILE ALA PHE ALA GLN ASP PRO ASP GLY TYR SEQRES 12 A 300 MET PHE GLU LEU ILE GLN ARG ALA ASP THR PRO GLU PRO SEQRES 13 A 300 LEU CYS GLN VAL MET LEU ARG VAL GLY ASP LEU GLU ARG SEQRES 14 A 300 SER ILE LYS PHE TYR GLU LYS ALA LEU GLY MET LYS LEU SEQRES 15 A 300 LEU ARG LYS LYS ASP VAL PRO ASP TYR LYS TYR THR ILE SEQRES 16 A 300 ALA MET LEU GLY TYR ALA ASP GLU ASP LYS THR THR VAL SEQRES 17 A 300 LEU GLU LEU THR TYR ASN TYR GLY VAL THR GLU TYR SER SEQRES 18 A 300 LYS GLY ASN ALA TYR ALA GLN VAL ALA ILE GLY THR ASN SEQRES 19 A 300 ASP VAL TYR LYS SER ALA GLU ALA VAL ASP LEU ALA THR SEQRES 20 A 300 LYS GLU LEU GLY GLY LYS ILE LEU ARG GLN PRO GLY PRO SEQRES 21 A 300 LEU PRO GLY ILE ASN THR LYS ILE ALA SER PHE VAL ASP SEQRES 22 A 300 PRO ASP GLY TRP LYS VAL VAL LEU VAL ASP ASN THR ASP SEQRES 23 A 300 PHE LEU LYS GLU LEU HIS LEU GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS HET NI A 301 1 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET NA A 307 1 HET NA A 308 1 HET 2PE A 309 25 HETNAM NI NICKEL (II) ION HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 2 NI NI 2+ FORMUL 3 FMT 5(C H2 O2) FORMUL 8 NA 2(NA 1+) FORMUL 10 2PE C18 H38 O10 FORMUL 11 HOH *145(H2 O) HELIX 1 1 ASP A 16 ASP A 21 1 6 HELIX 2 2 ASP A 34 CYS A 45 1 12 HELIX 3 3 PRO A 57 GLU A 59 5 3 HELIX 4 4 ASP A 103 LYS A 114 1 12 HELIX 5 5 ASP A 164 GLY A 177 1 14 HELIX 6 6 PRO A 187 TYR A 189 5 3 HELIX 7 7 ASP A 200 THR A 204 5 5 HELIX 8 8 ASP A 233 GLY A 249 1 17 HELIX 9 9 ASN A 282 HIS A 295 1 14 SHEET 1 A 8 LYS A 49 VAL A 56 0 SHEET 2 A 8 TYR A 61 GLY A 67 -1 O GLY A 67 N LYS A 49 SHEET 3 A 8 ALA A 76 ASN A 82 -1 O LEU A 79 N ALA A 64 SHEET 4 A 8 ARG A 24 ARG A 31 1 N ALA A 28 O GLU A 78 SHEET 5 A 8 TYR A 224 THR A 231 -1 O GLN A 226 N VAL A 29 SHEET 6 A 8 LYS A 276 ASP A 281 1 O VAL A 278 N ILE A 229 SHEET 7 A 8 LYS A 265 VAL A 270 -1 N PHE A 269 O VAL A 277 SHEET 8 A 8 LYS A 251 ILE A 252 -1 N LYS A 251 O VAL A 270 SHEET 1 B 8 LYS A 49 VAL A 56 0 SHEET 2 B 8 TYR A 61 GLY A 67 -1 O GLY A 67 N LYS A 49 SHEET 3 B 8 ALA A 76 ASN A 82 -1 O LEU A 79 N ALA A 64 SHEET 4 B 8 ARG A 24 ARG A 31 1 N ALA A 28 O GLU A 78 SHEET 5 B 8 TYR A 224 THR A 231 -1 O GLN A 226 N VAL A 29 SHEET 6 B 8 LYS A 276 ASP A 281 1 O VAL A 278 N ILE A 229 SHEET 7 B 8 LYS A 265 VAL A 270 -1 N PHE A 269 O VAL A 277 SHEET 8 B 8 GLY A 257 PRO A 258 -1 N GLY A 257 O ILE A 266 SHEET 1 C 8 LYS A 117 PRO A 124 0 SHEET 2 C 8 VAL A 131 GLN A 136 -1 O ILE A 132 N GLY A 123 SHEET 3 C 8 MET A 142 GLN A 147 -1 O LEU A 145 N ALA A 133 SHEET 4 C 8 PHE A 94 ASN A 101 1 N ILE A 99 O GLU A 144 SHEET 5 C 8 LEU A 155 ARG A 161 -1 O MET A 159 N HIS A 96 SHEET 6 C 8 VAL A 206 ASN A 212 1 O GLU A 208 N VAL A 158 SHEET 7 C 8 TYR A 191 GLY A 197 -1 N THR A 192 O TYR A 211 SHEET 8 C 8 LYS A 179 VAL A 186 -1 N LEU A 181 O MET A 195 LINK NE2 HIS A 290 NI NI A 301 1555 1555 2.24 LINK NE2 HIS A 295 NI NI A 301 1555 1555 2.25 LINK NA NA A 307 O13 2PE A 309 1555 1555 2.33 LINK NA NA A 307 O16 2PE A 309 1555 1555 2.36 LINK NA NA A 307 O10 2PE A 309 1555 1555 2.47 LINK NA NA A 307 O7 2PE A 309 1555 1555 2.49 LINK NA NA A 307 O HOH A 480 1555 1555 2.49 LINK NA NA A 307 O19 2PE A 309 1555 1555 2.51 LINK OE1 GLU A 144 NA NA A 308 1555 1555 2.55 LINK OE1 GLU A 208 NA NA A 308 1555 1555 2.65 LINK OE1 GLN A 157 NA NA A 308 1555 1555 2.69 LINK NA NA A 307 O22 2PE A 309 1555 1555 2.79 LINK NA NA A 308 O HOH A 520 1555 1555 3.19 CISPEP 1 GLY A 127 GLY A 128 0 11.53 CISPEP 2 GLY A 128 SER A 129 0 -9.95 SITE 1 AC1 2 HIS A 290 HIS A 295 SITE 1 AC2 3 ARG A 120 VAL A 125 2PE A 309 SITE 1 AC3 5 ARG A 161 THR A 210 ASN A 212 2PE A 309 SITE 2 AC3 5 HOH A 480 SITE 1 AC4 4 ARG A 182 LYS A 184 ILE A 193 HOH A 459 SITE 1 AC5 2 ILE A 146 ARG A 148 SITE 1 AC6 4 TYR A 105 SER A 268 LYS A 276 HOH A 474 SITE 1 AC7 2 2PE A 309 HOH A 480 SITE 1 AC8 5 HIS A 96 GLU A 144 GLN A 157 GLU A 208 SITE 2 AC8 5 2PE A 309 SITE 1 AC9 8 ILE A 132 PHE A 134 TYR A 191 FMT A 302 SITE 2 AC9 8 FMT A 303 NA A 307 NA A 308 HOH A 542 CRYST1 90.690 90.690 74.713 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011027 0.006366 0.000000 0.00000 SCALE2 0.000000 0.012732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013385 0.00000