HEADER TRANSCRIPTION 28-OCT-14 4ROC TITLE HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO U6#2 PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIIB 50 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TFIIIB50, HTFIIIB50, B-RELATED FACTOR 2, BRF-2, HBRFU; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TATA-BOX-BINDING PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TATA SEQUENCE-BINDING PROTEIN, TATA-BINDING FACTOR, TATA-BOX COMPND 10 FACTOR, TRANSCRIPTION INITIATION FACTOR TFIID TBP SUBUNIT; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TEMPLATE STRAND; COMPND 14 CHAIN: N; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: NON-TEMPLATE STRAND; COMPND 18 CHAIN: T; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRF2, BRFU, PRO1470; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TBP, GTF2D1, TF2D, TFIID; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: OLIGONUCLEOTIDE; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630; SOURCE 24 OTHER_DETAILS: OLIGONUCLEOTIDE KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VANNINI,J.GOUGE,K.SATIA,N.GUTHERTZ REVDAT 2 20-SEP-23 4ROC 1 REMARK SEQADV REVDAT 1 30-DEC-15 4ROC 0 JRNL AUTH J.GOUGE,K.SATIA,N.GUTHERTZ,M.WIDYA,A.J.THOMPSON,P.COUSIN, JRNL AUTH 2 O.DERGAI,N.HERNANDEZ,A.VANNINI JRNL TITL REDOX SIGNALING BY THE RNA POLYMERASE III TFIIB-RELATED JRNL TITL 2 FACTOR BRF2. JRNL REF CELL(CAMBRIDGE,MASS.) V. 163 1375 2015 JRNL REFN ISSN 0092-8674 JRNL PMID 26638071 JRNL DOI 10.1016/J.CELL.2015.11.005 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 56427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4072 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2746 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3869 REMARK 3 BIN R VALUE (WORKING SET) : 0.2741 REMARK 3 BIN FREE R VALUE : 0.2837 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3805 REMARK 3 NUCLEIC ACID ATOMS : 1101 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16570 REMARK 3 B22 (A**2) : 0.19630 REMARK 3 B33 (A**2) : -0.03060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.312 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5133 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7184 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2128 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 619 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5133 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 673 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5738 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.13 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|65 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.5867 0.5927 4.4123 REMARK 3 T TENSOR REMARK 3 T11: -0.0884 T22: -0.1001 REMARK 3 T33: -0.0494 T12: -0.0126 REMARK 3 T13: -0.0814 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 6.1834 L22: 3.5112 REMARK 3 L33: 2.0151 L12: -1.7641 REMARK 3 L13: -0.9448 L23: 0.2059 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: 0.4633 S13: -0.5442 REMARK 3 S21: -0.5442 S22: -0.1859 S23: 0.5305 REMARK 3 S31: 0.0720 S32: -0.3542 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|168 - A|364 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.0607 16.8436 6.3204 REMARK 3 T TENSOR REMARK 3 T11: -0.1370 T22: -0.0467 REMARK 3 T33: -0.0034 T12: 0.0063 REMARK 3 T13: 0.0586 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.8455 L22: 1.0887 REMARK 3 L33: 2.5255 L12: 0.3594 REMARK 3 L13: -1.1726 L23: -0.2500 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.1436 S13: -0.0508 REMARK 3 S21: -0.0470 S22: 0.0365 S23: -0.1690 REMARK 3 S31: -0.0242 S32: 0.3168 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|375 - A|378 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.6110 24.7124 42.5352 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.1275 REMARK 3 T33: 0.0726 T12: -0.0005 REMARK 3 T13: -0.0076 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.7810 L22: 1.0190 REMARK 3 L33: 0.1603 L12: 0.3477 REMARK 3 L13: 1.4401 L23: 0.6641 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0745 S13: -0.0040 REMARK 3 S21: 0.0505 S22: -0.0027 S23: 0.0026 REMARK 3 S31: 0.0036 S32: -0.0289 S33: 0.0032 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|379 - A|395 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.7580 29.2005 49.0093 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: -0.1366 REMARK 3 T33: -0.2231 T12: 0.0639 REMARK 3 T13: 0.1520 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 2.8543 L12: 2.9104 REMARK 3 L13: -0.8449 L23: -2.5852 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.3144 S13: 0.1296 REMARK 3 S21: 0.4594 S22: -0.0825 S23: 0.1928 REMARK 3 S31: 0.3221 S32: -0.0138 S33: 0.1708 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|396 - A|407 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.6716 41.7757 33.7390 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: -0.0317 REMARK 3 T33: 0.1215 T12: -0.0373 REMARK 3 T13: 0.0738 T23: -0.1101 REMARK 3 L TENSOR REMARK 3 L11: 1.9661 L22: 1.3592 REMARK 3 L33: 0.8209 L12: -2.9104 REMARK 3 L13: -0.4667 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.0141 S13: -0.1479 REMARK 3 S21: -0.1855 S22: 0.1302 S23: 0.1802 REMARK 3 S31: -0.0053 S32: -0.0852 S33: -0.0455 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|158 - B|334 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.9123 13.3114 35.0497 REMARK 3 T TENSOR REMARK 3 T11: -0.0175 T22: -0.1061 REMARK 3 T33: -0.1162 T12: -0.0398 REMARK 3 T13: 0.0651 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.8306 L22: 1.8746 REMARK 3 L33: 1.2866 L12: -1.0453 REMARK 3 L13: -0.8493 L23: 0.7886 REMARK 3 S TENSOR REMARK 3 S11: -0.1783 S12: -0.2466 S13: -0.2084 REMARK 3 S21: 0.4246 S22: 0.0483 S23: 0.1982 REMARK 3 S31: 0.1373 S32: 0.1443 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { N|2 - N|5 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.2885 34.0544 10.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0825 REMARK 3 T33: 0.0084 T12: -0.1005 REMARK 3 T13: 0.1520 T23: 0.1510 REMARK 3 L TENSOR REMARK 3 L11: 1.2289 L22: 1.3320 REMARK 3 L33: 0.2657 L12: -0.0772 REMARK 3 L13: -0.8760 L23: 0.3433 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0195 S13: -0.0353 REMARK 3 S21: 0.0311 S22: 0.0348 S23: -0.0225 REMARK 3 S31: 0.0663 S32: 0.0605 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { N|6 - N|14 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.2160 21.3064 21.3501 REMARK 3 T TENSOR REMARK 3 T11: -0.2507 T22: -0.2351 REMARK 3 T33: -0.0694 T12: -0.0193 REMARK 3 T13: 0.0112 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.6854 L22: 3.8940 REMARK 3 L33: 8.2829 L12: -2.1593 REMARK 3 L13: -2.8118 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: 0.1917 S13: 0.5442 REMARK 3 S21: -0.1377 S22: 0.0841 S23: 0.0537 REMARK 3 S31: -0.5442 S32: -0.2856 S33: -0.2092 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { N|15 - N|28 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.7570 5.0878 17.9394 REMARK 3 T TENSOR REMARK 3 T11: -0.0844 T22: -0.0132 REMARK 3 T33: 0.2785 T12: -0.0831 REMARK 3 T13: -0.0492 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 1.2208 L22: 0.0000 REMARK 3 L33: 2.6934 L12: -0.1291 REMARK 3 L13: 0.0765 L23: -0.7894 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.4150 S13: -0.5442 REMARK 3 S21: -0.1009 S22: -0.0308 S23: 0.5442 REMARK 3 S31: 0.5394 S32: -0.5442 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { T|1 - T|4 } REMARK 3 ORIGIN FOR THE GROUP (A): -33.0799 0.5824 10.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0715 REMARK 3 T33: 0.0294 T12: -0.0151 REMARK 3 T13: -0.1520 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.9197 L22: 1.8957 REMARK 3 L33: 0.2306 L12: -0.2366 REMARK 3 L13: 0.2345 L23: 0.3803 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0481 S13: -0.0153 REMARK 3 S21: -0.0061 S22: 0.0069 S23: 0.0043 REMARK 3 S31: -0.0132 S32: -0.0013 S33: -0.0115 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { T|5 - T|14 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.0183 10.4240 21.4358 REMARK 3 T TENSOR REMARK 3 T11: -0.2062 T22: -0.1243 REMARK 3 T33: 0.0140 T12: -0.0265 REMARK 3 T13: -0.0297 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2880 L22: 0.0000 REMARK 3 L33: 4.1600 L12: -1.8803 REMARK 3 L13: 0.5318 L23: -0.1872 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.0455 S13: -0.5442 REMARK 3 S21: 0.1693 S22: 0.1052 S23: 0.3724 REMARK 3 S31: 0.1307 S32: -0.1561 S33: -0.2175 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { T|15 - T|27 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.9769 27.3888 18.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: -0.1273 REMARK 3 T33: 0.0572 T12: -0.0394 REMARK 3 T13: 0.1327 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: 2.0452 L22: 0.6287 REMARK 3 L33: 1.4830 L12: -0.1470 REMARK 3 L13: 0.3450 L23: 2.4727 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0595 S13: 0.5442 REMARK 3 S21: -0.4438 S22: 0.0694 S23: -0.2445 REMARK 3 S31: -0.5442 S32: 0.3769 S33: -0.1188 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DENSITY BETWEEN THE RESIDUES 365 REMARK 3 AND 374 IS VERY POOR, THE LINKER HAS BEEN BUILT WITH 0 OCCUPANCY REMARK 4 REMARK 4 4ROC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968620 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 3.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1C9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, 50-100 MM MGCL2, 2 MM REMARK 280 DTT, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.63800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.23100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.95550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.23100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.63800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.95550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, N, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 ASN A 62 REMARK 465 GLU A 63 REMARK 465 GLN A 64 REMARK 465 GLY A 315 REMARK 465 THR A 316 REMARK 465 ALA A 317 REMARK 465 GLU A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 THR A 321 REMARK 465 ARG A 322 REMARK 465 GLU A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 325 REMARK 465 PRO A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 TRP A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 GLN A 333 REMARK 465 GLY A 334 REMARK 465 GLU A 335 REMARK 465 GLY A 336 REMARK 465 GLU A 337 REMARK 465 VAL A 338 REMARK 465 GLY A 339 REMARK 465 ASN A 340 REMARK 465 ASN A 341 REMARK 465 SER A 342 REMARK 465 LEU A 343 REMARK 465 GLY A 344 REMARK 465 LEU A 345 REMARK 465 PRO A 346 REMARK 465 GLN A 347 REMARK 465 GLY A 348 REMARK 465 LYS A 349 REMARK 465 ARG A 350 REMARK 465 PRO A 351 REMARK 465 ALA A 352 REMARK 465 SER A 353 REMARK 465 PRO A 354 REMARK 465 ALA A 355 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 GLN A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 THR A 413 REMARK 465 SER A 414 REMARK 465 VAL A 415 REMARK 465 PRO A 416 REMARK 465 ASN A 417 REMARK 465 PRO A 418 REMARK 465 PRO A 419 REMARK 465 PHE B 335 REMARK 465 ARG B 336 REMARK 465 LYS B 337 REMARK 465 THR B 338 REMARK 465 THR B 339 REMARK 465 DA N 1 REMARK 465 DT T 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT N 2 P OP1 OP2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 365 REMARK 475 PRO A 366 REMARK 475 LYS A 367 REMARK 475 ARG A 368 REMARK 475 ILE A 369 REMARK 475 CYS A 370 REMARK 475 PRO A 371 REMARK 475 VAL A 372 REMARK 475 PRO A 373 REMARK 475 PRO A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT N 12 O3' DT N 12 C3' -0.048 REMARK 500 DT T 2 O3' DT T 2 C3' -0.045 REMARK 500 DT T 14 O3' DT T 14 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC N 10 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT N 12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT N 21 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG N 24 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC T 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC T 9 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC T 21 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC T 22 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC T 25 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 238 69.83 -150.09 REMARK 500 PHE B 250 77.54 -119.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG N 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 207 O REMARK 620 2 HOH N 210 O 77.8 REMARK 620 3 HOH N 229 O 62.8 66.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG N 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROC RELATED DB: PDB REMARK 900 RELATED ID: 4ROD RELATED DB: PDB REMARK 900 RELATED ID: 4ROE RELATED DB: PDB DBREF 4ROC A 62 419 UNP Q9HAW0 BRF2_HUMAN 62 419 DBREF 4ROC B 159 339 UNP P20226 TBP_HUMAN 159 339 DBREF 4ROC N 1 28 PDB 4ROC 4ROC 1 28 DBREF 4ROC T 1 28 PDB 4ROC 4ROC 1 28 SEQADV 4ROC GLY A 60 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROC PRO A 61 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROC GLY B 157 UNP P20226 EXPRESSION TAG SEQADV 4ROC PRO B 158 UNP P20226 EXPRESSION TAG SEQRES 1 A 360 GLY PRO ASN GLU GLN VAL SER ARG SER GLN GLN ARG GLY SEQRES 2 A 360 LEU ARG ARG VAL ARG ASP LEU CYS ARG VAL LEU GLN LEU SEQRES 3 A 360 PRO PRO THR PHE GLU ASP THR ALA VAL ALA TYR TYR GLN SEQRES 4 A 360 GLN ALA TYR ARG HIS SER GLY ILE ARG ALA ALA ARG LEU SEQRES 5 A 360 GLN LYS LYS GLU VAL LEU VAL GLY CYS CYS VAL LEU ILE SEQRES 6 A 360 THR CYS ARG GLN HIS ASN TRP PRO LEU THR MET GLY ALA SEQRES 7 A 360 ILE CYS THR LEU LEU TYR ALA ASP LEU ASP VAL PHE SER SEQRES 8 A 360 SER THR TYR MET GLN ILE VAL LYS LEU LEU GLY LEU ASP SEQRES 9 A 360 VAL PRO SER LEU CYS LEU ALA GLU LEU VAL LYS THR TYR SEQRES 10 A 360 CYS SER SER PHE LYS LEU PHE GLN ALA SER PRO SER VAL SEQRES 11 A 360 PRO ALA LYS TYR VAL GLU ASP LYS GLU LYS MET LEU SER SEQRES 12 A 360 ARG THR MET GLN LEU VAL GLU LEU ALA ASN GLU THR TRP SEQRES 13 A 360 LEU VAL THR GLY ARG HIS PRO LEU PRO VAL ILE THR ALA SEQRES 14 A 360 ALA THR PHE LEU ALA TRP GLN SER LEU GLN PRO ALA ASP SEQRES 15 A 360 ARG LEU SER CYS SER LEU ALA ARG PHE CYS LYS LEU ALA SEQRES 16 A 360 ASN VAL ASP LEU PRO TYR PRO ALA SER SER ARG LEU GLN SEQRES 17 A 360 GLU LEU LEU ALA VAL LEU LEU ARG MET ALA GLU GLN LEU SEQRES 18 A 360 ALA TRP LEU ARG VAL LEU ARG LEU ASP LYS ARG SER VAL SEQRES 19 A 360 VAL LYS HIS ILE GLY ASP LEU LEU GLN HIS ARG GLN SER SEQRES 20 A 360 LEU VAL ARG SER ALA PHE ARG ASP GLY THR ALA GLU VAL SEQRES 21 A 360 GLU THR ARG GLU LYS GLU PRO PRO GLY TRP GLY GLN GLY SEQRES 22 A 360 GLN GLY GLU GLY GLU VAL GLY ASN ASN SER LEU GLY LEU SEQRES 23 A 360 PRO GLN GLY LYS ARG PRO ALA SER PRO ALA LEU LEU LEU SEQRES 24 A 360 PRO PRO CYS MET LEU LYS SER PRO LYS ARG ILE CYS PRO SEQRES 25 A 360 VAL PRO PRO VAL SER THR VAL THR GLY ASP GLU ASN ILE SEQRES 26 A 360 SER ASP SER GLU ILE GLU GLN TYR LEU ARG THR PRO GLN SEQRES 27 A 360 GLU VAL ARG ASP PHE GLN ARG ALA GLN ALA ALA ARG GLN SEQRES 28 A 360 ALA ALA THR SER VAL PRO ASN PRO PRO SEQRES 1 B 183 GLY PRO SER GLY ILE VAL PRO GLN LEU GLN ASN ILE VAL SEQRES 2 B 183 SER THR VAL ASN LEU GLY CYS LYS LEU ASP LEU LYS THR SEQRES 3 B 183 ILE ALA LEU ARG ALA ARG ASN ALA GLU TYR ASN PRO LYS SEQRES 4 B 183 ARG PHE ALA ALA VAL ILE MET ARG ILE ARG GLU PRO ARG SEQRES 5 B 183 THR THR ALA LEU ILE PHE SER SER GLY LYS MET VAL CYS SEQRES 6 B 183 THR GLY ALA LYS SER GLU GLU GLN SER ARG LEU ALA ALA SEQRES 7 B 183 ARG LYS TYR ALA ARG VAL VAL GLN LYS LEU GLY PHE PRO SEQRES 8 B 183 ALA LYS PHE LEU ASP PHE LYS ILE GLN ASN MET VAL GLY SEQRES 9 B 183 SER CYS ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU SEQRES 10 B 183 VAL LEU THR HIS GLN GLN PHE SER SER TYR GLU PRO GLU SEQRES 11 B 183 LEU PHE PRO GLY LEU ILE TYR ARG MET ILE LYS PRO ARG SEQRES 12 B 183 ILE VAL LEU LEU ILE PHE VAL SER GLY LYS VAL VAL LEU SEQRES 13 B 183 THR GLY ALA LYS VAL ARG ALA GLU ILE TYR GLU ALA PHE SEQRES 14 B 183 GLU ASN ILE TYR PRO ILE LEU LYS GLY PHE ARG LYS THR SEQRES 15 B 183 THR SEQRES 1 N 28 DA DT DT DG DA DA DG DG DG DC DT DT DA SEQRES 2 N 28 DA DA DA DT DA DG DG DT DG DT DG DA DC SEQRES 3 N 28 DA DG SEQRES 1 T 28 DC DT DG DT DC DA DC DA DC DC DT DA DT SEQRES 2 T 28 DT DT DT DA DA DG DC DC DC DT DT DC DA SEQRES 3 T 28 DA DT HET MG N 101 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ FORMUL 6 HOH *379(H2 O) HELIX 1 1 SER A 66 LEU A 83 1 18 HELIX 2 2 PRO A 86 ARG A 102 1 17 HELIX 3 3 HIS A 103 ALA A 108 1 6 HELIX 4 4 ARG A 110 HIS A 129 1 20 HELIX 5 5 THR A 134 TYR A 143 1 10 HELIX 6 6 ASP A 145 LEU A 160 1 16 HELIX 7 7 CYS A 168 SER A 179 1 12 HELIX 8 8 PRO A 190 VAL A 194 5 5 HELIX 9 9 ASP A 196 THR A 214 1 19 HELIX 10 10 PRO A 222 GLN A 238 1 17 HELIX 11 11 GLN A 238 LEU A 243 1 6 HELIX 12 12 SER A 246 ALA A 254 1 9 HELIX 13 13 PRO A 261 GLU A 278 1 18 HELIX 14 14 LEU A 280 VAL A 285 1 6 HELIX 15 15 VAL A 293 LYS A 295 5 3 HELIX 16 16 HIS A 296 HIS A 303 1 8 HELIX 17 17 HIS A 303 ASP A 314 1 12 HELIX 18 18 SER A 385 GLN A 391 1 7 HELIX 19 19 THR A 395 ALA A 407 1 13 HELIX 20 20 ASP B 179 ALA B 187 1 9 HELIX 21 21 SER B 226 LEU B 244 1 19 HELIX 22 22 ARG B 269 HIS B 277 1 9 HELIX 23 23 VAL B 317 GLY B 334 1 18 SHEET 1 A10 ALA B 190 ASN B 193 0 SHEET 2 A10 PHE B 197 ILE B 204 -1 O ILE B 201 N GLU B 191 SHEET 3 A10 THR B 209 ILE B 213 -1 O ALA B 211 N MET B 202 SHEET 4 A10 LYS B 218 ALA B 224 -1 O THR B 222 N THR B 210 SHEET 5 A10 GLN B 164 ASN B 173 -1 N SER B 170 O CYS B 221 SHEET 6 A10 LEU B 251 ASP B 263 -1 O GLN B 256 N VAL B 169 SHEET 7 A10 LYS B 309 ALA B 315 -1 O LEU B 312 N GLY B 260 SHEET 8 A10 ILE B 300 ILE B 304 -1 N LEU B 303 O VAL B 311 SHEET 9 A10 LEU B 291 MET B 295 -1 N TYR B 293 O LEU B 302 SHEET 10 A10 SER B 281 SER B 282 -1 N SER B 282 O ILE B 292 LINK MG MG N 101 O HOH N 207 1555 1555 2.49 LINK MG MG N 101 O HOH N 210 1555 1555 2.53 LINK MG MG N 101 O HOH N 229 1555 1555 2.61 CISPEP 1 LEU A 363 LYS A 364 0 1.63 CISPEP 2 GLU B 206 PRO B 207 0 -9.17 CISPEP 3 LYS B 297 PRO B 298 0 -7.85 SITE 1 AC1 3 HOH N 207 HOH N 210 HOH N 229 CRYST1 77.276 89.911 102.462 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009760 0.00000