HEADER TRANSCRIPTION 28-OCT-14 4ROE TITLE HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO RPPH1 PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIIB 50 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TFIIIB50, HTFIIIB50, B-RELATED FACTOR 2, BRF-2, HBRFU; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TATA-BOX-BINDING PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TATA SEQUENCE-BINDING PROTEIN, TATA-BINDING FACTOR, TATA-BOX COMPND 10 FACTOR, TRANSCRIPTION INITIATION FACTOR TFIID TBP SUBUNIT; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TEMPLATE STRAND; COMPND 14 CHAIN: N; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: NON-TEMPLATE STRAND; COMPND 18 CHAIN: T; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRF2, BRFU, PRO1470; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TBP, GTF2D1, TF2D, TFIID; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: OLIGONUCLEOTIDE; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630; SOURCE 24 OTHER_DETAILS: OLIGONUCLEOTIDE KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VANNINI,J.GOUGE,K.SATIA,N.GUTHERTZ REVDAT 2 28-FEB-24 4ROE 1 REMARK SEQADV LINK REVDAT 1 30-DEC-15 4ROE 0 JRNL AUTH J.GOUGE,K.SATIA,N.GUTHERTZ,M.WIDYA,A.J.THOMPSON,P.COUSIN, JRNL AUTH 2 O.DERGAI,N.HERNANDEZ,A.VANNINI JRNL TITL REDOX SIGNALING BY THE RNA POLYMERASE III TFIIB-RELATED JRNL TITL 2 FACTOR BRF2. JRNL REF CELL(CAMBRIDGE,MASS.) V. 163 1375 2015 JRNL REFN ISSN 0092-8674 JRNL PMID 26638071 JRNL DOI 10.1016/J.CELL.2015.11.005 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2845 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2309 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2713 REMARK 3 BIN R VALUE (WORKING SET) : 0.2296 REMARK 3 BIN FREE R VALUE : 0.2566 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.64 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3836 REMARK 3 NUCLEIC ACID ATOMS : 1084 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.98060 REMARK 3 B22 (A**2) : -5.23960 REMARK 3 B33 (A**2) : 0.25900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.357 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.234 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5130 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7170 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2131 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 78 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 619 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5130 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 671 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5679 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|64 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3576 -0.6141 4.5022 REMARK 3 T TENSOR REMARK 3 T11: -0.1949 T22: 0.0025 REMARK 3 T33: 0.0262 T12: 0.0403 REMARK 3 T13: 0.1188 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 6.0475 L22: 2.7669 REMARK 3 L33: 1.6522 L12: -0.2032 REMARK 3 L13: -0.1729 L23: 1.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: -0.0094 S13: 0.5442 REMARK 3 S21: -0.2055 S22: 0.1073 S23: -0.5442 REMARK 3 S31: 0.1234 S32: 0.5442 S33: -0.2064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|168 - A|366 } REMARK 3 ORIGIN FOR THE GROUP (A): -28.7531 -17.2743 6.2638 REMARK 3 T TENSOR REMARK 3 T11: -0.1841 T22: -0.0008 REMARK 3 T33: -0.0688 T12: 0.0112 REMARK 3 T13: -0.0167 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.0446 L22: 0.8849 REMARK 3 L33: 2.8317 L12: 0.2912 REMARK 3 L13: 1.1752 L23: 0.4800 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.1527 S13: 0.0475 REMARK 3 S21: -0.0103 S22: 0.0120 S23: 0.0590 REMARK 3 S31: 0.0095 S32: -0.4148 S33: -0.1509 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|367 - A|378 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.3073 -25.7209 43.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.1841 REMARK 3 T33: 0.0816 T12: -0.0076 REMARK 3 T13: -0.0966 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.6899 L22: 0.0000 REMARK 3 L33: 0.4371 L12: 2.1231 REMARK 3 L13: -1.1785 L23: 0.5348 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0313 S13: -0.0494 REMARK 3 S21: -0.0271 S22: -0.0191 S23: 0.0785 REMARK 3 S31: 0.0221 S32: 0.0038 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|379 - A|395 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.3325 -31.1296 48.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: -0.1272 REMARK 3 T33: -0.2631 T12: -0.0086 REMARK 3 T13: -0.1045 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.5222 L22: 0.0000 REMARK 3 L33: 1.2630 L12: 1.7372 REMARK 3 L13: 1.8491 L23: 1.8700 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.4364 S13: -0.4870 REMARK 3 S21: 0.4913 S22: -0.0712 S23: -0.3141 REMARK 3 S31: -0.2225 S32: -0.0502 S33: 0.0936 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|396 - A|411 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.6346 -43.7399 31.1303 REMARK 3 T TENSOR REMARK 3 T11: -0.0895 T22: 0.0389 REMARK 3 T33: 0.0701 T12: -0.0628 REMARK 3 T13: -0.0281 T23: 0.1466 REMARK 3 L TENSOR REMARK 3 L11: 1.2732 L22: 1.0243 REMARK 3 L33: 0.2782 L12: -2.8615 REMARK 3 L13: -2.5714 L23: 0.7369 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.0740 S13: 0.1267 REMARK 3 S21: -0.3213 S22: 0.0170 S23: -0.0868 REMARK 3 S31: -0.0364 S32: 0.1037 S33: -0.0268 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|158 - B|334 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.4906 -14.9600 34.8154 REMARK 3 T TENSOR REMARK 3 T11: -0.0196 T22: -0.0971 REMARK 3 T33: -0.1541 T12: -0.1350 REMARK 3 T13: -0.0241 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 3.6938 L22: 1.8395 REMARK 3 L33: 1.8148 L12: -1.5205 REMARK 3 L13: 1.4047 L23: -0.7000 REMARK 3 S TENSOR REMARK 3 S11: -0.2919 S12: -0.2372 S13: 0.3057 REMARK 3 S21: 0.4380 S22: 0.0521 S23: -0.1540 REMARK 3 S31: -0.2193 S32: -0.1210 S33: 0.2397 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { N|3 - N|5 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.1952 -39.7901 7.4445 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1170 REMARK 3 T33: 0.0752 T12: 0.0153 REMARK 3 T13: -0.0941 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 0.4520 L22: 0.5342 REMARK 3 L33: 0.5638 L12: 0.2786 REMARK 3 L13: 0.2888 L23: -0.3392 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0180 S13: 0.0063 REMARK 3 S21: -0.0091 S22: 0.0038 S23: 0.0044 REMARK 3 S31: -0.0077 S32: -0.0219 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { N|6 - N|14 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.0113 -25.4552 19.7692 REMARK 3 T TENSOR REMARK 3 T11: -0.2503 T22: -0.2073 REMARK 3 T33: -0.0243 T12: 0.0410 REMARK 3 T13: -0.1520 T23: -0.1365 REMARK 3 L TENSOR REMARK 3 L11: 0.0670 L22: 8.1946 REMARK 3 L33: 6.8090 L12: -0.3845 REMARK 3 L13: -0.9475 L23: 0.6899 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.2128 S13: -0.5442 REMARK 3 S21: -0.1038 S22: -0.1814 S23: -0.0605 REMARK 3 S31: 0.5442 S32: 0.4734 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { N|15 - N|28 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.9095 -7.5497 19.7032 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: -0.1111 REMARK 3 T33: 0.0239 T12: -0.1308 REMARK 3 T13: 0.0660 T23: 0.1261 REMARK 3 L TENSOR REMARK 3 L11: 3.7234 L22: 1.6491 REMARK 3 L33: 5.5467 L12: -0.4100 REMARK 3 L13: -1.4751 L23: 1.2527 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: 0.3381 S13: 0.5442 REMARK 3 S21: -0.5413 S22: -0.0521 S23: -0.5442 REMARK 3 S31: -0.5310 S32: 0.5336 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { T|2 - T|4 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.0043 -2.0850 13.0790 REMARK 3 T TENSOR REMARK 3 T11: -0.0490 T22: 0.0977 REMARK 3 T33: -0.0338 T12: -0.0044 REMARK 3 T13: 0.1520 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.9835 L22: 0.5331 REMARK 3 L33: 0.1510 L12: -0.4045 REMARK 3 L13: -0.4838 L23: -0.1929 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0201 S13: 0.0221 REMARK 3 S21: 0.0316 S22: -0.0021 S23: 0.0159 REMARK 3 S31: 0.0669 S32: 0.0226 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { T|5 - T|14 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.5270 -11.4531 21.5071 REMARK 3 T TENSOR REMARK 3 T11: -0.1219 T22: -0.0890 REMARK 3 T33: -0.0365 T12: -0.0633 REMARK 3 T13: 0.0617 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.5173 L22: 1.6953 REMARK 3 L33: 7.0230 L12: -0.3073 REMARK 3 L13: -2.6959 L23: 0.9237 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: -0.0129 S13: 0.5442 REMARK 3 S21: -0.2909 S22: 0.0377 S23: -0.3404 REMARK 3 S31: -0.5442 S32: 0.1793 S33: -0.2098 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { T|15 - T|28 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.5516 -30.4471 17.8662 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: -0.1201 REMARK 3 T33: 0.0941 T12: -0.0314 REMARK 3 T13: -0.0959 T23: -0.1364 REMARK 3 L TENSOR REMARK 3 L11: 1.2012 L22: 0.4970 REMARK 3 L33: 0.0298 L12: 0.1423 REMARK 3 L13: -0.4419 L23: -2.9085 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.1264 S13: -0.5442 REMARK 3 S21: -0.4845 S22: -0.1442 S23: 0.2320 REMARK 3 S31: 0.5442 S32: -0.2004 S33: 0.0811 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DENSITY BETWEEN THE RESIDUES 365 REMARK 3 AND 374 IS VERY POOR, THE LINKER HAS BEEN BUILT WITH 0 OCCUPANCY REMARK 4 REMARK 4 4ROE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37886 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 1.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, 50-100 MM MGCL2, 2 MM REMARK 280 DTT, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.87050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.21150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.96300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.21150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.87050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.96300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, N, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 ASN A 62 REMARK 465 GLU A 63 REMARK 465 GLY A 315 REMARK 465 THR A 316 REMARK 465 ALA A 317 REMARK 465 GLU A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 THR A 321 REMARK 465 ARG A 322 REMARK 465 GLU A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 325 REMARK 465 PRO A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 TRP A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 GLN A 333 REMARK 465 GLY A 334 REMARK 465 GLU A 335 REMARK 465 GLY A 336 REMARK 465 GLU A 337 REMARK 465 VAL A 338 REMARK 465 GLY A 339 REMARK 465 ASN A 340 REMARK 465 ASN A 341 REMARK 465 SER A 342 REMARK 465 LEU A 343 REMARK 465 GLY A 344 REMARK 465 LEU A 345 REMARK 465 PRO A 346 REMARK 465 GLN A 347 REMARK 465 GLY A 348 REMARK 465 LYS A 349 REMARK 465 ARG A 350 REMARK 465 PRO A 351 REMARK 465 ALA A 352 REMARK 465 SER A 353 REMARK 465 PRO A 354 REMARK 465 ALA A 355 REMARK 465 ALA A 412 REMARK 465 THR A 413 REMARK 465 SER A 414 REMARK 465 VAL A 415 REMARK 465 PRO A 416 REMARK 465 ASN A 417 REMARK 465 PRO A 418 REMARK 465 PRO A 419 REMARK 465 GLY B 157 REMARK 465 PHE B 335 REMARK 465 ARG B 336 REMARK 465 LYS B 337 REMARK 465 THR B 338 REMARK 465 THR B 339 REMARK 465 DC N 1 REMARK 465 DT N 2 REMARK 465 DG T 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 410 CG CD OE1 NE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 364 REMARK 475 SER A 365 REMARK 475 PRO A 366 REMARK 475 LYS A 367 REMARK 475 ARG A 368 REMARK 475 ILE A 369 REMARK 475 CYS A 370 REMARK 475 PRO A 371 REMARK 475 VAL A 372 REMARK 475 PRO A 373 REMARK 475 PRO A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC N 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA N 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC N 24 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT T 10 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC T 21 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 22 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT T 26 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG N 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 205 O REMARK 620 2 HOH N 220 O 84.9 REMARK 620 3 HOH N 221 O 78.6 163.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG T 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH T 222 O REMARK 620 2 HOH T 227 O 91.6 REMARK 620 3 HOH T 228 O 86.9 106.7 REMARK 620 4 HOH T 234 O 167.9 82.0 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG N 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG T 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROC RELATED DB: PDB REMARK 900 RELATED ID: 4ROD RELATED DB: PDB DBREF 4ROE A 62 419 UNP Q9HAW0 BRF2_HUMAN 62 419 DBREF 4ROE B 159 339 UNP P20226 TBP_HUMAN 159 339 DBREF 4ROE N 1 28 PDB 4ROE 4ROE 1 28 DBREF 4ROE T 2 29 PDB 4ROE 4ROE 2 29 SEQADV 4ROE GLY A 60 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROE PRO A 61 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROE GLY B 157 UNP P20226 EXPRESSION TAG SEQADV 4ROE PRO B 158 UNP P20226 EXPRESSION TAG SEQRES 1 A 360 GLY PRO ASN GLU GLN VAL SER ARG SER GLN GLN ARG GLY SEQRES 2 A 360 LEU ARG ARG VAL ARG ASP LEU CYS ARG VAL LEU GLN LEU SEQRES 3 A 360 PRO PRO THR PHE GLU ASP THR ALA VAL ALA TYR TYR GLN SEQRES 4 A 360 GLN ALA TYR ARG HIS SER GLY ILE ARG ALA ALA ARG LEU SEQRES 5 A 360 GLN LYS LYS GLU VAL LEU VAL GLY CYS CYS VAL LEU ILE SEQRES 6 A 360 THR CYS ARG GLN HIS ASN TRP PRO LEU THR MET GLY ALA SEQRES 7 A 360 ILE CYS THR LEU LEU TYR ALA ASP LEU ASP VAL PHE SER SEQRES 8 A 360 SER THR TYR MET GLN ILE VAL LYS LEU LEU GLY LEU ASP SEQRES 9 A 360 VAL PRO SER LEU CYS LEU ALA GLU LEU VAL LYS THR TYR SEQRES 10 A 360 CYS SER SER PHE LYS LEU PHE GLN ALA SER PRO SER VAL SEQRES 11 A 360 PRO ALA LYS TYR VAL GLU ASP LYS GLU LYS MET LEU SER SEQRES 12 A 360 ARG THR MET GLN LEU VAL GLU LEU ALA ASN GLU THR TRP SEQRES 13 A 360 LEU VAL THR GLY ARG HIS PRO LEU PRO VAL ILE THR ALA SEQRES 14 A 360 ALA THR PHE LEU ALA TRP GLN SER LEU GLN PRO ALA ASP SEQRES 15 A 360 ARG LEU SER CYS SER LEU ALA ARG PHE CYS LYS LEU ALA SEQRES 16 A 360 ASN VAL ASP LEU PRO TYR PRO ALA SER SER ARG LEU GLN SEQRES 17 A 360 GLU LEU LEU ALA VAL LEU LEU ARG MET ALA GLU GLN LEU SEQRES 18 A 360 ALA TRP LEU ARG VAL LEU ARG LEU ASP LYS ARG SER VAL SEQRES 19 A 360 VAL LYS HIS ILE GLY ASP LEU LEU GLN HIS ARG GLN SER SEQRES 20 A 360 LEU VAL ARG SER ALA PHE ARG ASP GLY THR ALA GLU VAL SEQRES 21 A 360 GLU THR ARG GLU LYS GLU PRO PRO GLY TRP GLY GLN GLY SEQRES 22 A 360 GLN GLY GLU GLY GLU VAL GLY ASN ASN SER LEU GLY LEU SEQRES 23 A 360 PRO GLN GLY LYS ARG PRO ALA SER PRO ALA LEU LEU LEU SEQRES 24 A 360 PRO PRO CYS MET LEU LYS SER PRO LYS ARG ILE CYS PRO SEQRES 25 A 360 VAL PRO PRO VAL SER THR VAL THR GLY ASP GLU ASN ILE SEQRES 26 A 360 SER ASP SER GLU ILE GLU GLN TYR LEU ARG THR PRO GLN SEQRES 27 A 360 GLU VAL ARG ASP PHE GLN ARG ALA GLN ALA ALA ARG GLN SEQRES 28 A 360 ALA ALA THR SER VAL PRO ASN PRO PRO SEQRES 1 B 183 GLY PRO SER GLY ILE VAL PRO GLN LEU GLN ASN ILE VAL SEQRES 2 B 183 SER THR VAL ASN LEU GLY CYS LYS LEU ASP LEU LYS THR SEQRES 3 B 183 ILE ALA LEU ARG ALA ARG ASN ALA GLU TYR ASN PRO LYS SEQRES 4 B 183 ARG PHE ALA ALA VAL ILE MET ARG ILE ARG GLU PRO ARG SEQRES 5 B 183 THR THR ALA LEU ILE PHE SER SER GLY LYS MET VAL CYS SEQRES 6 B 183 THR GLY ALA LYS SER GLU GLU GLN SER ARG LEU ALA ALA SEQRES 7 B 183 ARG LYS TYR ALA ARG VAL VAL GLN LYS LEU GLY PHE PRO SEQRES 8 B 183 ALA LYS PHE LEU ASP PHE LYS ILE GLN ASN MET VAL GLY SEQRES 9 B 183 SER CYS ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU SEQRES 10 B 183 VAL LEU THR HIS GLN GLN PHE SER SER TYR GLU PRO GLU SEQRES 11 B 183 LEU PHE PRO GLY LEU ILE TYR ARG MET ILE LYS PRO ARG SEQRES 12 B 183 ILE VAL LEU LEU ILE PHE VAL SER GLY LYS VAL VAL LEU SEQRES 13 B 183 THR GLY ALA LYS VAL ARG ALA GLU ILE TYR GLU ALA PHE SEQRES 14 B 183 GLU ASN ILE TYR PRO ILE LEU LYS GLY PHE ARG LYS THR SEQRES 15 B 183 THR SEQRES 1 N 28 DC DT DC DA DT DA DC DA DG DA DA DC DT SEQRES 2 N 28 DT DA DT DA DA DG DA DT DT DC DC DC DA SEQRES 3 N 28 DA DA SEQRES 1 T 28 DT DT DT DG DG DG DA DA DT DC DT DT DA SEQRES 2 T 28 DT DA DA DG DT DT DC DT DG DT DA DT DG SEQRES 3 T 28 DA DG HET MG N 101 1 HET MG T 101 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *312(H2 O) HELIX 1 1 SER A 66 LEU A 83 1 18 HELIX 2 2 PRO A 87 ARG A 102 1 16 HELIX 3 3 HIS A 103 ALA A 108 1 6 HELIX 4 4 ARG A 110 HIS A 129 1 20 HELIX 5 5 THR A 134 TYR A 143 1 10 HELIX 6 6 ASP A 145 LEU A 160 1 16 HELIX 7 7 CYS A 168 SER A 179 1 12 HELIX 8 8 PRO A 190 VAL A 194 5 5 HELIX 9 9 ASP A 196 THR A 214 1 19 HELIX 10 10 PRO A 222 GLN A 238 1 17 HELIX 11 11 GLN A 238 LEU A 243 1 6 HELIX 12 12 SER A 246 ALA A 254 1 9 HELIX 13 13 PRO A 261 GLU A 278 1 18 HELIX 14 14 LEU A 280 VAL A 285 1 6 HELIX 15 15 VAL A 293 LYS A 295 5 3 HELIX 16 16 HIS A 296 HIS A 303 1 8 HELIX 17 17 HIS A 303 ASP A 314 1 12 HELIX 18 18 SER A 385 GLN A 391 1 7 HELIX 19 19 THR A 395 ALA A 408 1 14 HELIX 20 20 ASP B 179 ALA B 187 1 9 HELIX 21 21 SER B 226 LEU B 244 1 19 HELIX 22 22 ARG B 269 HIS B 277 1 9 HELIX 23 23 VAL B 317 GLY B 334 1 18 SHEET 1 A10 ALA B 190 ASN B 193 0 SHEET 2 A10 PHE B 197 ILE B 204 -1 O ILE B 201 N GLU B 191 SHEET 3 A10 THR B 209 ILE B 213 -1 O ALA B 211 N MET B 202 SHEET 4 A10 LYS B 218 ALA B 224 -1 O THR B 222 N THR B 210 SHEET 5 A10 GLN B 164 ASN B 173 -1 N SER B 170 O CYS B 221 SHEET 6 A10 LEU B 251 ASP B 263 -1 O LEU B 251 N ASN B 173 SHEET 7 A10 LYS B 309 ALA B 315 -1 O LEU B 312 N GLY B 260 SHEET 8 A10 ILE B 300 ILE B 304 -1 N VAL B 301 O THR B 313 SHEET 9 A10 LEU B 291 MET B 295 -1 N TYR B 293 O LEU B 302 SHEET 10 A10 SER B 281 SER B 282 -1 N SER B 282 O ILE B 292 LINK MG MG N 101 O HOH N 205 1555 1555 2.60 LINK MG MG N 101 O HOH N 220 1555 1555 2.17 LINK MG MG N 101 O HOH N 221 1555 1555 2.19 LINK MG MG T 101 O HOH T 222 1555 1555 2.63 LINK MG MG T 101 O HOH T 227 1555 1555 2.43 LINK MG MG T 101 O HOH T 228 1555 1555 2.27 LINK MG MG T 101 O HOH T 234 1555 1555 2.54 CISPEP 1 GLU B 206 PRO B 207 0 -8.75 CISPEP 2 LYS B 297 PRO B 298 0 -4.57 SITE 1 AC1 4 DA N 18 HOH N 205 HOH N 220 HOH N 221 SITE 1 AC2 5 DA T 17 HOH T 222 HOH T 227 HOH T 228 SITE 2 AC2 5 HOH T 234 CRYST1 77.741 91.926 102.423 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009763 0.00000