data_4ROH # _entry.id 4ROH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ROH RCSB RCSB087598 WWPDB D_1000087598 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 5CQ2 _pdbx_database_PDB_obs_spr.replace_pdb_id 4ROH _pdbx_database_PDB_obs_spr.date 2015-10-14 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ROF . unspecified PDB 4ROI . unspecified PDB 4ROJ . unspecified # _pdbx_database_status.entry_id 4ROH _pdbx_database_status.status_code OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-10-28 _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Tempel, W.' 2 'Bountra, C.' 3 'Arrowsmith, C.H.' 4 'Edwards, A.M.' 5 'Min, J.' 6 'Structural Genomics Consortium (SGC)' 7 # _citation.id primary _citation.title 'Crystal Structure of tandem WW domains of ITCH in complex with TXNIP peptide' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Liu, Y.' 1 primary 'Tempel, W.' 2 primary 'Bountra, C.' 3 primary 'Arrowsmith, C.H.' 4 primary 'Edwards, A.M.' 5 primary 'Min, J.' 6 primary 'Structural Genomics Consortium (SGC)' 7 # _cell.entry_id 4ROH _cell.length_a 57.277 _cell.length_b 62.260 _cell.length_c 67.815 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ROH _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.Int_Tables_number 23 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Itchy homolog' 10412.411 1 6.3.2.- ? 'UNP residues 433-521' ? 2 polymer syn 'Thioredoxin-interacting protein' 1359.589 2 ? ? 'UNP residues 327-338' ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 11 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Itch, Atrophin-1-interacting protein 4, AIP4, NFE2-associated polypeptide 1, NAPP1' 2 'Thioredoxin-binding protein 2, Vitamin D3 up-regulated protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT GKSALDNGPQ ; ;GEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT GKSALDNGPQ ; A ? 2 'polypeptide(L)' no yes '(ACE)TPEAPPCYMDVI(NH2)' XTPEAPPCYMDVIX B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 PHE n 1 4 ASP n 1 5 PRO n 1 6 LEU n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 PRO n 1 11 PRO n 1 12 GLY n 1 13 TRP n 1 14 GLU n 1 15 LYS n 1 16 ARG n 1 17 THR n 1 18 ASP n 1 19 SER n 1 20 ASN n 1 21 GLY n 1 22 ARG n 1 23 VAL n 1 24 TYR n 1 25 PHE n 1 26 VAL n 1 27 ASN n 1 28 HIS n 1 29 ASN n 1 30 THR n 1 31 ARG n 1 32 ILE n 1 33 THR n 1 34 GLN n 1 35 TRP n 1 36 GLU n 1 37 ASP n 1 38 PRO n 1 39 ARG n 1 40 SER n 1 41 GLN n 1 42 GLY n 1 43 GLN n 1 44 LEU n 1 45 ASN n 1 46 GLU n 1 47 LYS n 1 48 PRO n 1 49 LEU n 1 50 PRO n 1 51 GLU n 1 52 GLY n 1 53 TRP n 1 54 GLU n 1 55 MET n 1 56 ARG n 1 57 PHE n 1 58 THR n 1 59 VAL n 1 60 ASP n 1 61 GLY n 1 62 ILE n 1 63 PRO n 1 64 TYR n 1 65 PHE n 1 66 VAL n 1 67 ASP n 1 68 HIS n 1 69 ASN n 1 70 ARG n 1 71 ARG n 1 72 THR n 1 73 THR n 1 74 THR n 1 75 TYR n 1 76 ILE n 1 77 ASP n 1 78 PRO n 1 79 ARG n 1 80 THR n 1 81 GLY n 1 82 LYS n 1 83 SER n 1 84 ALA n 1 85 LEU n 1 86 ASP n 1 87 ASN n 1 88 GLY n 1 89 PRO n 1 90 GLN n 2 1 ACE n 2 2 THR n 2 3 PRO n 2 4 GLU n 2 5 ALA n 2 6 PRO n 2 7 PRO n 2 8 CYS n 2 9 TYR n 2 10 MET n 2 11 ASP n 2 12 VAL n 2 13 ILE n 2 14 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ITCH _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ITCH_HUMAN Q96J02 1 ;EFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG KSALDNGPQ ; 433 ? 2 UNP TXNIP_HUMAN Q9H3M7 2 TPEAPPCYMDVI 327 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ROH A 2 ? 90 ? Q96J02 433 ? 521 ? 433 521 2 2 4ROH B 2 ? 13 ? Q9H3M7 327 ? 338 ? 327 338 3 2 4ROH C 2 ? 13 ? Q9H3M7 327 ? 338 ? 327 338 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ROH GLY A 1 ? UNP Q96J02 ? ? 'EXPRESSION TAG' 432 1 2 4ROH ACE B 1 ? UNP Q9H3M7 ? ? ACETYLATION 326 2 2 4ROH NH2 B 14 ? UNP Q9H3M7 ? ? AMIDATION 339 3 3 4ROH ACE C 1 ? UNP Q9H3M7 ? ? ACETYLATION 326 4 3 4ROH NH2 C 14 ? UNP Q9H3M7 ? ? AMIDATION 339 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4ROH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 46.66 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '30% PEG 4000, 0.2 M magnesium chloride, 0.1 M Tris hydrochloride pH 8.5, vapor diffusion, sitting drop, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4ROH _reflns.pdbx_ordinal 1 _reflns.d_resolution_high 1.340 _reflns.d_resolution_low 45.860 _reflns.pdbx_number_measured_all 185243 _reflns.number_obs 27467 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_netI_over_sigmaI 21.400 _reflns.pdbx_redundancy 6.700 _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rrim_I_all 0.049 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_CC_half 1.000 _reflns.number_all ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_diffrn_id 1 1.340 1.360 ? 3144 ? ? 1.001 1.000 ? ? 2.500 ? ? ? 1237 ? ? ? ? 92.100 1.240 0.713 0.535 1 2 7.340 45.860 ? 963 ? ? 0.019 64.700 ? ? 5.200 ? ? ? 185 ? ? ? ? 91.500 0.021 0.009 0.999 1 # _refine.entry_id 4ROH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3400 _refine.ls_d_res_low 45.8600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5000 _refine.ls_number_reflns_obs 27465 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;The structure of an isomorphous crystal was solved by molecular replacement with PHASER and coordinates related to PDB entry 4RRE. COOT was used for interactive model building. Model geometry was evaluated with MOLPROBITY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1609 _refine.ls_R_factor_R_work 0.1595 _refine.ls_wR_factor_R_work 0.1502 _refine.ls_R_factor_R_free 0.1888 _refine.ls_wR_factor_R_free 0.1718 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 1329 _refine.ls_number_reflns_R_work 26136 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.7206 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.2000 _refine.aniso_B[2][2] 1.8700 _refine.aniso_B[3][3] -0.6700 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.overall_SU_R_Cruickshank_DPI 0.0480 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.0474 _refine.pdbx_overall_ESU_R 0.0480 _refine.pdbx_overall_ESU_R_Free 0.0470 _refine.overall_SU_ML 0.0420 _refine.overall_SU_B 2.4190 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7974 _refine.B_iso_max 98.660 _refine.B_iso_min 7.920 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 793 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 864 _refine_hist.d_res_high 1.3400 _refine_hist.d_res_low 45.8600 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 841 0.019 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 740 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1156 1.772 1.976 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1717 0.949 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 103 6.013 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39 26.217 22.564 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 120 9.089 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 10.809 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 118 0.121 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 953 0.010 0.022 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 188 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 407 4.454 2.425 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 405 4.449 2.415 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 505 5.390 3.599 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1580 3.956 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 26 25.431 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1597 13.257 5.000 ? ? # _refine_ls_shell.d_res_high 1.3400 _refine_ls_shell.d_res_low 1.3750 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.5500 _refine_ls_shell.number_reflns_R_work 1775 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3200 _refine_ls_shell.R_factor_R_free 0.3410 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 115 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1890 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4ROH _struct.title 'Crystal Structure of tandem WW domains of ITCH in complex with TXNIP peptide' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Itchy homolog (E.C.6.3.2.-), Thioredoxin-interacting protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ROH _struct_keywords.text 'structural genomics, Structural Genomics Consortium, SGC, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS B 8 ? ILE B 13 ? CYS B 333 ILE B 338 1 ? 6 HELX_P HELX_P2 2 CYS C 8 ? ILE C 13 ? CYS C 333 ILE C 338 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 8 SG B ? ? 1_555 C CYS 8 SG B ? B CYS 333 C CYS 333 2_565 ? ? ? ? ? ? ? 1.930 ? disulf2 disulf ? ? B CYS 8 SG A ? ? 1_555 C CYS 8 SG A ? B CYS 333 C CYS 333 2_565 ? ? ? ? ? ? ? 2.053 ? covale1 covale ? ? B ACE 1 C ? ? ? 1_555 B THR 2 N ? ? B ACE 326 B THR 327 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? B ILE 13 C ? ? ? 1_555 B NH2 14 N ? ? B ILE 338 B NH2 339 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? C ILE 13 C ? ? ? 1_555 C NH2 14 N ? ? C ILE 338 C NH2 339 1_555 ? ? ? ? ? ? ? 1.352 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 13 ? THR A 17 ? TRP A 444 THR A 448 A 2 VAL A 23 ? ASN A 27 ? VAL A 454 ASN A 458 A 3 ILE A 32 ? GLN A 34 ? ILE A 463 GLN A 465 B 1 TRP A 53 ? PHE A 57 ? TRP A 484 PHE A 488 B 2 PRO A 63 ? ASP A 67 ? PRO A 494 ASP A 498 B 3 THR A 72 ? THR A 74 ? THR A 503 THR A 505 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 14 ? N GLU A 445 O VAL A 26 ? O VAL A 457 A 2 3 N PHE A 25 ? N PHE A 456 O GLN A 34 ? O GLN A 465 B 1 2 N GLU A 54 ? N GLU A 485 O VAL A 66 ? O VAL A 497 B 2 3 N PHE A 65 ? N PHE A 496 O THR A 74 ? O THR A 505 # _atom_sites.entry_id 4ROH _atom_sites.fract_transf_matrix[1][1] 0.017459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016062 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014746 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 432 ? ? ? A . n A 1 2 GLU 2 433 ? ? ? A . n A 1 3 PHE 3 434 ? ? ? A . n A 1 4 ASP 4 435 ? ? ? A . n A 1 5 PRO 5 436 ? ? ? A . n A 1 6 LEU 6 437 ? ? ? A . n A 1 7 GLY 7 438 438 GLY GLY A . n A 1 8 PRO 8 439 439 PRO PRO A . n A 1 9 LEU 9 440 440 LEU LEU A . n A 1 10 PRO 10 441 441 PRO PRO A . n A 1 11 PRO 11 442 442 PRO PRO A . n A 1 12 GLY 12 443 443 GLY GLY A . n A 1 13 TRP 13 444 444 TRP TRP A . n A 1 14 GLU 14 445 445 GLU GLU A . n A 1 15 LYS 15 446 446 LYS LYS A . n A 1 16 ARG 16 447 447 ARG ARG A . n A 1 17 THR 17 448 448 THR THR A . n A 1 18 ASP 18 449 449 ASP ASP A . n A 1 19 SER 19 450 450 SER SER A . n A 1 20 ASN 20 451 451 ASN ASN A . n A 1 21 GLY 21 452 452 GLY GLY A . n A 1 22 ARG 22 453 453 ARG ARG A . n A 1 23 VAL 23 454 454 VAL VAL A . n A 1 24 TYR 24 455 455 TYR TYR A . n A 1 25 PHE 25 456 456 PHE PHE A . n A 1 26 VAL 26 457 457 VAL VAL A . n A 1 27 ASN 27 458 458 ASN ASN A . n A 1 28 HIS 28 459 459 HIS HIS A . n A 1 29 ASN 29 460 460 ASN ASN A . n A 1 30 THR 30 461 461 THR THR A . n A 1 31 ARG 31 462 462 ARG ARG A . n A 1 32 ILE 32 463 463 ILE ILE A . n A 1 33 THR 33 464 464 THR THR A . n A 1 34 GLN 34 465 465 GLN GLN A . n A 1 35 TRP 35 466 466 TRP TRP A . n A 1 36 GLU 36 467 467 GLU GLU A . n A 1 37 ASP 37 468 468 ASP ASP A . n A 1 38 PRO 38 469 469 PRO PRO A . n A 1 39 ARG 39 470 470 ARG ARG A . n A 1 40 SER 40 471 471 SER SER A . n A 1 41 GLN 41 472 472 GLN GLN A . n A 1 42 GLY 42 473 ? ? ? A . n A 1 43 GLN 43 474 ? ? ? A . n A 1 44 LEU 44 475 ? ? ? A . n A 1 45 ASN 45 476 ? ? ? A . n A 1 46 GLU 46 477 477 GLU GLU A . n A 1 47 LYS 47 478 478 LYS LYS A . n A 1 48 PRO 48 479 479 PRO PRO A . n A 1 49 LEU 49 480 480 LEU LEU A . n A 1 50 PRO 50 481 481 PRO PRO A . n A 1 51 GLU 51 482 482 GLU GLU A . n A 1 52 GLY 52 483 483 GLY GLY A . n A 1 53 TRP 53 484 484 TRP TRP A . n A 1 54 GLU 54 485 485 GLU GLU A . n A 1 55 MET 55 486 486 MET MET A . n A 1 56 ARG 56 487 487 ARG ARG A . n A 1 57 PHE 57 488 488 PHE PHE A . n A 1 58 THR 58 489 489 THR THR A . n A 1 59 VAL 59 490 490 VAL VAL A . n A 1 60 ASP 60 491 491 ASP ASP A . n A 1 61 GLY 61 492 492 GLY GLY A . n A 1 62 ILE 62 493 493 ILE ILE A . n A 1 63 PRO 63 494 494 PRO PRO A . n A 1 64 TYR 64 495 495 TYR TYR A . n A 1 65 PHE 65 496 496 PHE PHE A . n A 1 66 VAL 66 497 497 VAL VAL A . n A 1 67 ASP 67 498 498 ASP ASP A . n A 1 68 HIS 68 499 499 HIS HIS A . n A 1 69 ASN 69 500 500 ASN ASN A . n A 1 70 ARG 70 501 501 ARG ARG A . n A 1 71 ARG 71 502 502 ARG ARG A . n A 1 72 THR 72 503 503 THR THR A . n A 1 73 THR 73 504 504 THR THR A . n A 1 74 THR 74 505 505 THR THR A . n A 1 75 TYR 75 506 506 TYR TYR A . n A 1 76 ILE 76 507 507 ILE ILE A . n A 1 77 ASP 77 508 508 ASP ASP A . n A 1 78 PRO 78 509 509 PRO PRO A . n A 1 79 ARG 79 510 510 ARG ARG A . n A 1 80 THR 80 511 511 THR THR A . n A 1 81 GLY 81 512 512 GLY GLY A . n A 1 82 LYS 82 513 513 LYS LYS A . n A 1 83 SER 83 514 514 SER SER A . n A 1 84 ALA 84 515 515 ALA ALA A . n A 1 85 LEU 85 516 516 LEU LEU A . n A 1 86 ASP 86 517 517 ASP ASP A . n A 1 87 ASN 87 518 ? ? ? A . n A 1 88 GLY 88 519 ? ? ? A . n A 1 89 PRO 89 520 ? ? ? A . n A 1 90 GLN 90 521 ? ? ? A . n B 2 1 ACE 1 326 326 ACE ACE B . n B 2 2 THR 2 327 327 THR THR B . n B 2 3 PRO 3 328 328 PRO PRO B . n B 2 4 GLU 4 329 329 GLU GLU B . n B 2 5 ALA 5 330 330 ALA ALA B . n B 2 6 PRO 6 331 331 PRO PRO B . n B 2 7 PRO 7 332 332 PRO PRO B . n B 2 8 CYS 8 333 333 CYS CYS B . n B 2 9 TYR 9 334 334 TYR TYR B . n B 2 10 MET 10 335 335 MET MET B . n B 2 11 ASP 11 336 336 ASP ASP B . n B 2 12 VAL 12 337 337 VAL VAL B . n B 2 13 ILE 13 338 338 ILE ILE B . n B 2 14 NH2 14 339 339 NH2 NH2 B . n C 2 1 ACE 1 326 ? ? ? C . n C 2 2 THR 2 327 327 THR THR C . n C 2 3 PRO 3 328 328 PRO PRO C . n C 2 4 GLU 4 329 329 GLU GLU C . n C 2 5 ALA 5 330 330 ALA ALA C . n C 2 6 PRO 6 331 331 PRO PRO C . n C 2 7 PRO 7 332 332 PRO PRO C . n C 2 8 CYS 8 333 333 CYS CYS C . n C 2 9 TYR 9 334 334 TYR TYR C . n C 2 10 MET 10 335 335 MET MET C . n C 2 11 ASP 11 336 336 ASP ASP C . n C 2 12 VAL 12 337 337 VAL VAL C . n C 2 13 ILE 13 338 338 ILE ILE C . n C 2 14 NH2 14 339 339 NH2 NH2 C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 UNX 1 601 1 UNX UNX A . E 3 UNX 1 602 2 UNX UNX A . F 3 UNX 1 603 4 UNX UNX A . G 3 UNX 1 604 5 UNX UNX A . H 3 UNX 1 605 7 UNX UNX A . I 3 UNX 1 606 8 UNX UNX A . J 3 UNX 1 607 10 UNX UNX A . K 3 UNX 1 608 11 UNX UNX A . L 3 UNX 1 402 9 UNX UNX B . M 3 UNX 1 402 3 UNX UNX C . N 3 UNX 1 403 6 UNX UNX C . O 4 HOH 1 701 2 HOH HOH A . O 4 HOH 2 702 3 HOH HOH A . O 4 HOH 3 703 4 HOH HOH A . O 4 HOH 4 704 6 HOH HOH A . O 4 HOH 5 705 7 HOH HOH A . O 4 HOH 6 706 8 HOH HOH A . O 4 HOH 7 707 9 HOH HOH A . O 4 HOH 8 708 11 HOH HOH A . O 4 HOH 9 709 12 HOH HOH A . O 4 HOH 10 710 13 HOH HOH A . O 4 HOH 11 711 14 HOH HOH A . O 4 HOH 12 712 15 HOH HOH A . O 4 HOH 13 713 16 HOH HOH A . O 4 HOH 14 714 17 HOH HOH A . O 4 HOH 15 715 20 HOH HOH A . O 4 HOH 16 716 21 HOH HOH A . O 4 HOH 17 717 22 HOH HOH A . O 4 HOH 18 718 24 HOH HOH A . O 4 HOH 19 719 27 HOH HOH A . O 4 HOH 20 720 30 HOH HOH A . O 4 HOH 21 721 31 HOH HOH A . O 4 HOH 22 722 33 HOH HOH A . O 4 HOH 23 723 35 HOH HOH A . O 4 HOH 24 724 36 HOH HOH A . O 4 HOH 25 725 40 HOH HOH A . O 4 HOH 26 726 43 HOH HOH A . O 4 HOH 27 727 44 HOH HOH A . O 4 HOH 28 728 46 HOH HOH A . O 4 HOH 29 729 47 HOH HOH A . O 4 HOH 30 730 48 HOH HOH A . O 4 HOH 31 731 49 HOH HOH A . O 4 HOH 32 732 51 HOH HOH A . O 4 HOH 33 733 52 HOH HOH A . O 4 HOH 34 734 57 HOH HOH A . O 4 HOH 35 735 58 HOH HOH A . O 4 HOH 36 736 59 HOH HOH A . O 4 HOH 37 737 60 HOH HOH A . O 4 HOH 38 738 62 HOH HOH A . O 4 HOH 39 739 63 HOH HOH A . O 4 HOH 40 740 64 HOH HOH A . O 4 HOH 41 741 66 HOH HOH A . O 4 HOH 42 742 67 HOH HOH A . O 4 HOH 43 743 68 HOH HOH A . O 4 HOH 44 744 69 HOH HOH A . O 4 HOH 45 745 74 HOH HOH A . O 4 HOH 46 746 75 HOH HOH A . O 4 HOH 47 747 76 HOH HOH A . O 4 HOH 48 748 78 HOH HOH A . O 4 HOH 49 749 79 HOH HOH A . P 4 HOH 1 501 10 HOH HOH B . P 4 HOH 2 502 19 HOH HOH B . P 4 HOH 3 503 23 HOH HOH B . P 4 HOH 4 504 39 HOH HOH B . P 4 HOH 5 505 53 HOH HOH B . P 4 HOH 6 506 54 HOH HOH B . P 4 HOH 7 507 71 HOH HOH B . P 4 HOH 8 508 72 HOH HOH B . Q 4 HOH 1 501 26 HOH HOH C . Q 4 HOH 2 502 28 HOH HOH C . Q 4 HOH 3 503 77 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16610 ? 1 MORE -83 ? 1 'SSA (A^2)' 20850 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 62.2600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 62.2600000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 723 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id O _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2015-10-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data collection' http://www.hkl-xray.com/ ? ? 2 HKL . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'molecular replacement' http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC5 . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 DENZO . ? ? ? ? 'data reduction' ? ? ? 7 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? 9 REFMAC 5.8.0073 ? ? ? ? refinement ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 333 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 UNK _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 UNX _pdbx_validate_close_contact.auth_seq_id_2 402 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 487 ? ? CZ A ARG 487 ? ? NH1 A ARG 487 ? ? 124.11 120.30 3.81 0.50 N 2 1 NE A ARG 487 ? ? CZ A ARG 487 ? ? NH2 A ARG 487 ? ? 117.08 120.30 -3.22 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 446 ? NZ ? A LYS 15 NZ 2 1 Y 1 A SER 450 ? OG ? A SER 19 OG 3 1 Y 1 A ASN 451 ? CG ? A ASN 20 CG 4 1 Y 1 A ASN 451 ? OD1 ? A ASN 20 OD1 5 1 Y 1 A ASN 451 ? ND2 ? A ASN 20 ND2 6 1 Y 1 A GLN 472 ? C ? A GLN 41 C 7 1 Y 1 A GLN 472 ? O ? A GLN 41 O 8 1 Y 1 A GLN 472 ? CB ? A GLN 41 CB 9 1 Y 1 A GLN 472 ? CG ? A GLN 41 CG 10 1 Y 1 A GLN 472 ? CD ? A GLN 41 CD 11 1 Y 1 A GLN 472 ? OE1 ? A GLN 41 OE1 12 1 Y 1 A GLN 472 ? NE2 ? A GLN 41 NE2 13 1 Y 1 A GLU 477 ? N ? A GLU 46 N 14 1 Y 1 A GLU 477 ? CB ? A GLU 46 CB 15 1 Y 1 A GLU 477 ? CG ? A GLU 46 CG 16 1 Y 1 A GLU 477 ? CD ? A GLU 46 CD 17 1 Y 1 A GLU 477 ? OE1 ? A GLU 46 OE1 18 1 Y 1 A GLU 477 ? OE2 ? A GLU 46 OE2 19 1 Y 1 A LYS 513 ? CG ? A LYS 82 CG 20 1 Y 1 A LYS 513 ? CD ? A LYS 82 CD 21 1 Y 1 A LYS 513 ? CE ? A LYS 82 CE 22 1 Y 1 A LYS 513 ? NZ ? A LYS 82 NZ 23 1 Y 1 B VAL 337 ? CG1 ? B VAL 12 CG1 24 1 Y 1 B VAL 337 ? CG2 ? B VAL 12 CG2 25 1 Y 1 C THR 327 ? OG1 ? C THR 2 OG1 26 1 Y 1 C THR 327 ? CG2 ? C THR 2 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 432 ? A GLY 1 2 1 Y 1 A GLU 433 ? A GLU 2 3 1 Y 1 A PHE 434 ? A PHE 3 4 1 Y 1 A ASP 435 ? A ASP 4 5 1 Y 1 A PRO 436 ? A PRO 5 6 1 Y 1 A LEU 437 ? A LEU 6 7 1 Y 1 A GLY 473 ? A GLY 42 8 1 Y 1 A GLN 474 ? A GLN 43 9 1 Y 1 A LEU 475 ? A LEU 44 10 1 Y 1 A ASN 476 ? A ASN 45 11 1 Y 1 A ASN 518 ? A ASN 87 12 1 Y 1 A GLY 519 ? A GLY 88 13 1 Y 1 A PRO 520 ? A PRO 89 14 1 Y 1 A GLN 521 ? A GLN 90 15 1 Y 1 C ACE 326 ? C ACE 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #