HEADER LIGASE 28-OCT-14 4ROI OBSLTE 14-OCT-15 4ROI 5DZD TITLE CRYSTAL STRUCTURE OF WW4 DOMAIN OF ITCH IN COMPLEX WITH TXNIP PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ITCHY HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 475-514; COMPND 5 SYNONYM: ITCH, ATROPHIN-1-INTERACTING PROTEIN 4, AIP4, NFE2- COMPND 6 ASSOCIATED POLYPEPTIDE 1, NAPP1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THIOREDOXIN-INTERACTING PROTEIN; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 327-338; COMPND 13 SYNONYM: THIOREDOXIN-BINDING PROTEIN 2, VITAMIN D3 UP-REGULATED COMPND 14 PROTEIN 1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITCH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CUSTOM; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 2 14-OCT-15 4ROI 1 OBSLTE REVDAT 1 10-DEC-14 4ROI 0 JRNL AUTH Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF WW4 DOMAIN OF ITCH IN COMPLEX WITH JRNL TITL 2 TXNIP PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 841 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 757 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1159 ; 2.048 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1755 ; 1.045 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 104 ; 6.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;20.979 ;22.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 124 ;10.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 122 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 943 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 190 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 400 ; 3.289 ; 1.730 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 398 ; 3.257 ; 1.722 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 497 ; 5.242 ; 2.555 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARP/WARP WAS USED FOR AUTOMATED MODEL REMARK 3 BUILDING. REFINEMENT RESTRAINTS FOR THE ACETYL AND AMIDE REMARK 3 PROTECTED PEPTIDE TERMINI WERE PREPARED WITH JLIGAND. COOT WAS REMARK 3 USED FOR INTERACTIVE MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED REMARK 3 WITH MOLPROBITY. REMARK 4 REMARK 4 4ROI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB087599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 37.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.300 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YSF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M SODIUM FORMATE, 0.1 M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.23800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.33400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.85700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.33400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.61900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.33400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.85700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.33400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.61900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.23800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 52.66800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 52.66800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.23800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 715 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 468 REMARK 465 ARG A 469 REMARK 465 ARG A 470 REMARK 465 ALA A 471 REMARK 465 SER A 472 REMARK 465 VAL A 473 REMARK 465 GLU A 474 REMARK 465 LEU A 475 REMARK 465 ASN A 476 REMARK 465 GLU A 477 REMARK 465 GLY B 468 REMARK 465 ARG B 469 REMARK 465 ARG B 470 REMARK 465 ALA B 471 REMARK 465 SER B 472 REMARK 465 VAL B 473 REMARK 465 GLU B 474 REMARK 465 LEU B 475 REMARK 465 ACE D 326 REMARK 465 THR D 327 REMARK 465 PRO D 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 SER A 514 C O CB OG REMARK 470 GLU B 477 CG CD OE1 OE2 REMARK 470 LYS B 478 NZ REMARK 470 GLU D 329 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 333 UNK UNX D 401 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 487 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 502 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 502 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 501 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 508 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROF RELATED DB: PDB REMARK 900 RELATED ID: 4ROH RELATED DB: PDB REMARK 900 RELATED ID: 4ROJ RELATED DB: PDB DBREF 4ROI A 475 514 UNP Q96J02 ITCH_HUMAN 475 514 DBREF 4ROI B 475 514 UNP Q96J02 ITCH_HUMAN 475 514 DBREF 4ROI C 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 DBREF 4ROI D 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 SEQADV 4ROI GLY A 468 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ARG A 469 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ARG A 470 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ALA A 471 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI SER A 472 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI VAL A 473 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI GLU A 474 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI GLY B 468 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ARG B 469 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ARG B 470 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ALA B 471 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI SER B 472 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI VAL B 473 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI GLU B 474 UNP Q96J02 EXPRESSION TAG SEQADV 4ROI ACE C 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROI NH2 C 339 UNP Q9H3M7 AMIDATION SEQADV 4ROI ACE D 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROI NH2 D 339 UNP Q9H3M7 AMIDATION SEQRES 1 A 47 GLY ARG ARG ALA SER VAL GLU LEU ASN GLU LYS PRO LEU SEQRES 2 A 47 PRO GLU GLY TRP GLU MET ARG PHE THR VAL ASP GLY ILE SEQRES 3 A 47 PRO TYR PHE VAL ASP HIS ASN ARG ARG THR THR THR TYR SEQRES 4 A 47 ILE ASP PRO ARG THR GLY LYS SER SEQRES 1 B 47 GLY ARG ARG ALA SER VAL GLU LEU ASN GLU LYS PRO LEU SEQRES 2 B 47 PRO GLU GLY TRP GLU MET ARG PHE THR VAL ASP GLY ILE SEQRES 3 B 47 PRO TYR PHE VAL ASP HIS ASN ARG ARG THR THR THR TYR SEQRES 4 B 47 ILE ASP PRO ARG THR GLY LYS SER SEQRES 1 C 14 ACE THR PRO GLU ALA PRO PRO CYS TYR MET ASP VAL ILE SEQRES 2 C 14 NH2 SEQRES 1 D 14 ACE THR PRO GLU ALA PRO PRO CYS TYR MET ASP VAL ILE SEQRES 2 D 14 NH2 HET ACE C 326 3 HET NH2 C 339 1 HET NH2 D 339 1 HET UNX A 601 1 HET UNX A 602 1 HET UNX A 603 1 HET UNX B 601 1 HET UNX B 602 1 HET UNX B 603 1 HET UNX D 401 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 ACE C2 H4 O FORMUL 3 NH2 2(H2 N) FORMUL 5 UNX 7(X) FORMUL 12 HOH *73(H2 O) HELIX 1 1 CYS C 333 ILE C 338 1 6 HELIX 2 2 CYS D 333 ILE D 338 1 6 SHEET 1 A 3 TRP A 484 PHE A 488 0 SHEET 2 A 3 PRO A 494 ASP A 498 -1 O VAL A 497 N GLU A 485 SHEET 3 A 3 THR A 503 THR A 505 -1 O THR A 503 N ASP A 498 SHEET 1 B 3 TRP B 484 PHE B 488 0 SHEET 2 B 3 PRO B 494 ASP B 498 -1 O VAL B 497 N GLU B 485 SHEET 3 B 3 THR B 503 THR B 505 -1 O THR B 505 N PHE B 496 SSBOND 1 CYS C 333 CYS D 333 1555 1555 2.02 LINK C ACE C 326 N THR C 327 1555 1555 1.33 LINK C ILE C 338 N NH2 C 339 1555 1555 1.34 LINK C ILE D 338 N NH2 D 339 1555 1555 1.35 CRYST1 52.668 52.668 82.476 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012125 0.00000