HEADER LIGASE 28-OCT-14 4ROJ TITLE CRYSTAL STRUCTURE OF THE VAV2 SH2 DOMAIN IN COMPLEX WITH TXNIP TITLE 2 PHOSPHORYLATED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR VAV2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 667-782; COMPND 5 SYNONYM: VAV-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THIOREDOXIN-INTERACTING PROTEIN; COMPND 9 CHAIN: D, E, F; COMPND 10 FRAGMENT: UNP RESIDUES 327-338; COMPND 11 SYNONYM: THIOREDOXIN-BINDING PROTEIN 2, VITAMIN D3 UP-REGULATED COMPND 12 PROTEIN 1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL GENOMICS, SH2 DOMAIN, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 06-DEC-23 4ROJ 1 REMARK REVDAT 2 20-SEP-23 4ROJ 1 SEQADV SSBOND LINK REVDAT 1 10-DEC-14 4ROJ 0 JRNL AUTH Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF THE VAV2 SH2 DOMAIN IN COMPLEX WITH JRNL TITL 2 TXNIP PHOSPHORYLATED PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2939 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2660 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4000 ; 1.681 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6147 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 7.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;31.625 ;24.698 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;27.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3314 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1378 ; 2.328 ; 1.886 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1377 ; 2.317 ; 1.883 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1725 ; 3.418 ; 2.795 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 667 A 769 REMARK 3 ORIGIN FOR THE GROUP (A): 83.2692 15.5076 11.4813 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0663 REMARK 3 T33: 0.0210 T12: -0.0462 REMARK 3 T13: 0.0150 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.5097 L22: 3.5321 REMARK 3 L33: 6.7412 L12: 1.0305 REMARK 3 L13: -2.4820 L23: -0.5246 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: 0.0689 S13: -0.1497 REMARK 3 S21: -0.0592 S22: -0.0763 S23: -0.1936 REMARK 3 S31: 0.1660 S32: 0.0922 S33: 0.1641 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 667 B 769 REMARK 3 ORIGIN FOR THE GROUP (A): 84.9025 44.9715 -12.8994 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.1356 REMARK 3 T33: 0.0222 T12: 0.0903 REMARK 3 T13: -0.0231 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.9475 L22: 4.7128 REMARK 3 L33: 5.6051 L12: -1.3394 REMARK 3 L13: 1.2087 L23: -1.2913 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: -0.0790 S13: 0.0912 REMARK 3 S21: -0.0299 S22: 0.0226 S23: -0.2402 REMARK 3 S31: -0.0812 S32: 0.2937 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 667 C 769 REMARK 3 ORIGIN FOR THE GROUP (A): 104.9248 36.3724 14.3309 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: 0.0682 REMARK 3 T33: 0.0129 T12: -0.0396 REMARK 3 T13: 0.0045 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 4.7341 L22: 3.1826 REMARK 3 L33: 5.3388 L12: 0.7732 REMARK 3 L13: 1.9717 L23: 1.4047 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 0.0426 S13: 0.1144 REMARK 3 S21: 0.0887 S22: -0.0002 S23: -0.0788 REMARK 3 S31: -0.1079 S32: -0.0501 S33: 0.0861 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARP/WARP WAS USED FOR AUTOMATED MODEL REMARK 3 BUILDING. JLIGAND WAS USED TO PREPARE RESTRAINTS FOR THE AMIDE REMARK 3 TERMINUS OF THE PEPTIDE. COOT WAS USED FOR INTERACTIVE MODEL REMARK 3 BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. REMARK 4 REMARK 4 4ROJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG550-MME, 0.1 M AMMONIUM REMARK 280 SULFATE, 0.1 M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.64867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.29733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.47300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 134.12167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.82433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.64867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.29733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 134.12167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.47300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.82433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 666 REMARK 465 ARG A 770 REMARK 465 GLU A 771 REMARK 465 ARG A 772 REMARK 465 SER A 773 REMARK 465 ALA A 774 REMARK 465 SER A 775 REMARK 465 ARG A 776 REMARK 465 ALA A 777 REMARK 465 SER A 778 REMARK 465 SER A 779 REMARK 465 ARG A 780 REMARK 465 SER A 781 REMARK 465 PRO A 782 REMARK 465 GLY B 666 REMARK 465 ARG B 770 REMARK 465 GLU B 771 REMARK 465 ARG B 772 REMARK 465 SER B 773 REMARK 465 ALA B 774 REMARK 465 SER B 775 REMARK 465 ARG B 776 REMARK 465 ALA B 777 REMARK 465 SER B 778 REMARK 465 SER B 779 REMARK 465 ARG B 780 REMARK 465 SER B 781 REMARK 465 PRO B 782 REMARK 465 GLY C 666 REMARK 465 ARG C 770 REMARK 465 GLU C 771 REMARK 465 ARG C 772 REMARK 465 SER C 773 REMARK 465 ALA C 774 REMARK 465 SER C 775 REMARK 465 ARG C 776 REMARK 465 ALA C 777 REMARK 465 SER C 778 REMARK 465 SER C 779 REMARK 465 ARG C 780 REMARK 465 SER C 781 REMARK 465 PRO C 782 REMARK 465 ACE D 326 REMARK 465 THR D 327 REMARK 465 PRO D 328 REMARK 465 GLU D 329 REMARK 465 ALA D 330 REMARK 465 ACE E 326 REMARK 465 THR E 327 REMARK 465 PRO E 328 REMARK 465 GLU E 329 REMARK 465 ALA E 330 REMARK 465 NH2 E 339 REMARK 465 ACE F 326 REMARK 465 THR F 327 REMARK 465 PRO F 328 REMARK 465 GLU F 329 REMARK 465 ALA F 330 REMARK 465 ILE F 338 REMARK 465 NH2 F 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 LYS A 757 CD CE NZ REMARK 470 GLN A 758 CG CD OE1 NE2 REMARK 470 LYS A 764 CE NZ REMARK 470 LYS B 688 CG CD CE NZ REMARK 470 LYS B 718 NZ REMARK 470 LYS B 757 CG CD CE NZ REMARK 470 GLN B 758 CG CD OE1 NE2 REMARK 470 LYS B 764 CE NZ REMARK 470 LYS C 688 CD CE NZ REMARK 470 LYS C 718 CE NZ REMARK 470 ASN C 727 CG OD1 ND2 REMARK 470 GLN C 758 CG CD OE1 NE2 REMARK 470 LYS C 764 NZ REMARK 470 ILE E 338 CA C O CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 680 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 680 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 680 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG C 680 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 680 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 677 40.48 -82.15 REMARK 500 ASN A 677 42.57 -83.92 REMARK 500 ASN A 714 64.98 37.04 REMARK 500 ASN A 714 -112.97 49.36 REMARK 500 ASP A 726 -133.47 56.90 REMARK 500 GLN A 758 -1.98 83.92 REMARK 500 ASN B 677 44.26 -87.63 REMARK 500 ASN B 714 -128.17 58.04 REMARK 500 ASP B 726 -130.12 48.90 REMARK 500 GLN B 758 53.83 39.30 REMARK 500 LEU B 759 57.97 -144.77 REMARK 500 ASN C 677 35.63 -83.92 REMARK 500 ASN C 677 39.71 -86.96 REMARK 500 ASN C 714 -119.12 51.95 REMARK 500 ASN C 714 69.35 26.49 REMARK 500 ASP C 715 -6.91 85.43 REMARK 500 ASP C 726 -136.12 53.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROF RELATED DB: PDB REMARK 900 RELATED ID: 4ROH RELATED DB: PDB REMARK 900 RELATED ID: 4ROI RELATED DB: PDB DBREF 4ROJ A 667 782 UNP P52735 VAV2_HUMAN 667 782 DBREF 4ROJ B 667 782 UNP P52735 VAV2_HUMAN 667 782 DBREF 4ROJ C 667 782 UNP P52735 VAV2_HUMAN 667 782 DBREF 4ROJ D 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 DBREF 4ROJ E 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 DBREF 4ROJ F 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 SEQADV 4ROJ GLY A 666 UNP P52735 EXPRESSION TAG SEQADV 4ROJ GLY B 666 UNP P52735 EXPRESSION TAG SEQADV 4ROJ GLY C 666 UNP P52735 EXPRESSION TAG SEQADV 4ROJ ACE D 326 UNP Q9H3M7 EXPRESSION TAG SEQADV 4ROJ NH2 D 339 UNP Q9H3M7 EXPRESSION TAG SEQADV 4ROJ ACE E 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROJ NH2 E 339 UNP Q9H3M7 AMIDATION SEQADV 4ROJ ACE F 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROJ NH2 F 339 UNP Q9H3M7 AMIDATION SEQRES 1 A 117 GLY ASP TYR THR ALA TYR PRO TRP PHE ALA GLY ASN MET SEQRES 2 A 117 GLU ARG GLN GLN THR ASP ASN LEU LEU LYS SER HIS ALA SEQRES 3 A 117 SER GLY THR TYR LEU ILE ARG GLU ARG PRO ALA GLU ALA SEQRES 4 A 117 GLU ARG PHE ALA ILE SER ILE LYS PHE ASN ASP GLU VAL SEQRES 5 A 117 LYS HIS ILE LYS VAL VAL GLU LYS ASP ASN TRP ILE HIS SEQRES 6 A 117 ILE THR GLU ALA LYS LYS PHE ASP SER LEU LEU GLU LEU SEQRES 7 A 117 VAL GLU TYR TYR GLN CYS HIS SER LEU LYS GLU SER PHE SEQRES 8 A 117 LYS GLN LEU ASP THR THR LEU LYS TYR PRO TYR LYS SER SEQRES 9 A 117 ARG GLU ARG SER ALA SER ARG ALA SER SER ARG SER PRO SEQRES 1 B 117 GLY ASP TYR THR ALA TYR PRO TRP PHE ALA GLY ASN MET SEQRES 2 B 117 GLU ARG GLN GLN THR ASP ASN LEU LEU LYS SER HIS ALA SEQRES 3 B 117 SER GLY THR TYR LEU ILE ARG GLU ARG PRO ALA GLU ALA SEQRES 4 B 117 GLU ARG PHE ALA ILE SER ILE LYS PHE ASN ASP GLU VAL SEQRES 5 B 117 LYS HIS ILE LYS VAL VAL GLU LYS ASP ASN TRP ILE HIS SEQRES 6 B 117 ILE THR GLU ALA LYS LYS PHE ASP SER LEU LEU GLU LEU SEQRES 7 B 117 VAL GLU TYR TYR GLN CYS HIS SER LEU LYS GLU SER PHE SEQRES 8 B 117 LYS GLN LEU ASP THR THR LEU LYS TYR PRO TYR LYS SER SEQRES 9 B 117 ARG GLU ARG SER ALA SER ARG ALA SER SER ARG SER PRO SEQRES 1 C 117 GLY ASP TYR THR ALA TYR PRO TRP PHE ALA GLY ASN MET SEQRES 2 C 117 GLU ARG GLN GLN THR ASP ASN LEU LEU LYS SER HIS ALA SEQRES 3 C 117 SER GLY THR TYR LEU ILE ARG GLU ARG PRO ALA GLU ALA SEQRES 4 C 117 GLU ARG PHE ALA ILE SER ILE LYS PHE ASN ASP GLU VAL SEQRES 5 C 117 LYS HIS ILE LYS VAL VAL GLU LYS ASP ASN TRP ILE HIS SEQRES 6 C 117 ILE THR GLU ALA LYS LYS PHE ASP SER LEU LEU GLU LEU SEQRES 7 C 117 VAL GLU TYR TYR GLN CYS HIS SER LEU LYS GLU SER PHE SEQRES 8 C 117 LYS GLN LEU ASP THR THR LEU LYS TYR PRO TYR LYS SER SEQRES 9 C 117 ARG GLU ARG SER ALA SER ARG ALA SER SER ARG SER PRO SEQRES 1 D 14 ACE THR PRO GLU ALA PRO PRO CYS PTR MET ASP VAL ILE SEQRES 2 D 14 NH2 SEQRES 1 E 14 ACE THR PRO GLU ALA PRO PRO CYS PTR MET ASP VAL ILE SEQRES 2 E 14 NH2 SEQRES 1 F 14 ACE THR PRO GLU ALA PRO PRO CYS PTR MET ASP VAL ILE SEQRES 2 F 14 NH2 MODRES 4ROJ PTR D 334 TYR O-PHOSPHOTYROSINE MODRES 4ROJ PTR E 334 TYR O-PHOSPHOTYROSINE MODRES 4ROJ PTR F 334 TYR O-PHOSPHOTYROSINE HET PTR D 334 16 HET NH2 D 339 1 HET PTR E 334 16 HET PTR F 334 16 HET UNX A 801 1 HET UNX A 802 1 HET UNX A 803 1 HET UNX A 804 1 HET UNX B 801 1 HET UNX B 802 1 HET UNX B 803 1 HET UNX B 804 1 HET UNX B 805 1 HET UNX C 801 1 HET UNX C 802 1 HET UNX C 803 1 HET UNX C 804 1 HET UNX F 401 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM NH2 AMINO GROUP HETNAM UNX UNKNOWN ATOM OR ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 4 PTR 3(C9 H12 N O6 P) FORMUL 4 NH2 H2 N FORMUL 7 UNX 14(X) FORMUL 21 HOH *145(H2 O) HELIX 1 1 GLU A 679 LYS A 688 1 10 HELIX 2 2 SER A 739 HIS A 750 1 12 HELIX 3 3 SER A 751 SER A 755 5 5 HELIX 4 4 GLU B 679 LYS B 688 1 10 HELIX 5 5 SER B 739 HIS B 750 1 12 HELIX 6 6 SER B 751 SER B 755 5 5 HELIX 7 7 GLU C 679 SER C 689 1 11 HELIX 8 8 SER C 739 HIS C 750 1 12 HELIX 9 9 SER C 751 SER C 755 5 5 SHEET 1 A 6 LYS A 735 PHE A 737 0 SHEET 2 A 6 TRP A 728 THR A 732 -1 N ILE A 729 O PHE A 737 SHEET 3 A 6 GLU A 716 LYS A 725 -1 N VAL A 723 O HIS A 730 SHEET 4 A 6 PHE A 707 PHE A 713 -1 N ILE A 711 O LYS A 718 SHEET 5 A 6 THR A 694 GLU A 699 -1 N THR A 694 O LYS A 712 SHEET 6 A 6 TYR A 765 PRO A 766 1 O TYR A 765 N TYR A 695 SHEET 1 B 6 LYS B 735 PHE B 737 0 SHEET 2 B 6 TRP B 728 THR B 732 -1 N ILE B 729 O PHE B 737 SHEET 3 B 6 GLU B 716 LYS B 725 -1 N VAL B 723 O HIS B 730 SHEET 4 B 6 PHE B 707 PHE B 713 -1 N ILE B 711 O LYS B 718 SHEET 5 B 6 THR B 694 GLU B 699 -1 N LEU B 696 O SER B 710 SHEET 6 B 6 TYR B 765 PRO B 766 1 O TYR B 765 N TYR B 695 SHEET 1 C 6 LYS C 735 PHE C 737 0 SHEET 2 C 6 TRP C 728 THR C 732 -1 N ILE C 729 O PHE C 737 SHEET 3 C 6 GLU C 716 LYS C 725 -1 N VAL C 723 O HIS C 730 SHEET 4 C 6 PHE C 707 PHE C 713 -1 N ILE C 711 O LYS C 718 SHEET 5 C 6 THR C 694 GLU C 699 -1 N LEU C 696 O SER C 710 SHEET 6 C 6 TYR C 765 PRO C 766 1 O TYR C 765 N TYR C 695 SSBOND 1 CYS A 749 CYS E 333 5664 1555 2.08 SSBOND 2 CYS B 749 CYS F 333 1555 8565 2.04 SSBOND 3 CYS C 749 CYS D 333 1555 1555 2.07 LINK C CYS D 333 N PTR D 334 1555 1555 1.33 LINK C PTR D 334 N MET D 335 1555 1555 1.34 LINK C ILE D 338 N NH2 D 339 1555 1555 1.41 LINK C CYS E 333 N PTR E 334 1555 1555 1.32 LINK C PTR E 334 N MET E 335 1555 1555 1.34 LINK C CYS F 333 N PTR F 334 1555 1555 1.32 LINK C PTR F 334 N MET F 335 1555 1555 1.33 CRYST1 99.764 99.764 160.946 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010024 0.005787 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006213 0.00000