HEADER HYDROLASE 29-OCT-14 4ROU TITLE AUTO-INHIBITION MECHANISM OF HUMAN MITOCHONDRIAL RNASE P PROTEIN TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL RIBONUCLEASE P PROTEIN 3; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: MITOCHONDRIAL RNASE P PROTEIN 3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, MITOCHONDRIA EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,X.LIU,X.YANG,Y.SHEN REVDAT 2 20-MAR-24 4ROU 1 REMARK LINK REVDAT 1 04-NOV-15 4ROU 0 JRNL AUTH F.LI,X.LIU,X.YANG,Y.SHEN JRNL TITL AUTO-INHIBITION MECHANISM OF HUMAN MITOCHONDRIAL RNASE P JRNL TITL 2 PROTEIN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1360 - 4.9291 0.94 2607 146 0.2476 0.2657 REMARK 3 2 4.9291 - 3.9130 1.00 2649 132 0.2014 0.2444 REMARK 3 3 3.9130 - 3.4186 1.00 2625 151 0.2294 0.2697 REMARK 3 4 3.4186 - 3.1061 1.00 2619 135 0.2634 0.3465 REMARK 3 5 3.1061 - 2.8835 1.00 2603 119 0.2865 0.3033 REMARK 3 6 2.8835 - 2.7135 0.98 2554 129 0.2879 0.3569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3975 REMARK 3 ANGLE : 0.937 5382 REMARK 3 CHIRALITY : 0.044 603 REMARK 3 PLANARITY : 0.005 679 REMARK 3 DIHEDRAL : 14.089 1372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.3955 0.5977 -3.7382 REMARK 3 T TENSOR REMARK 3 T11: 0.3924 T22: 0.1809 REMARK 3 T33: 0.3532 T12: 0.1117 REMARK 3 T13: -0.0126 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.0944 L22: 0.8081 REMARK 3 L33: 2.5632 L12: 0.5107 REMARK 3 L13: -0.9706 L23: -0.3626 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.0263 S13: -0.1126 REMARK 3 S21: -0.0143 S22: -0.0380 S23: -0.0328 REMARK 3 S31: 0.0128 S32: -0.1276 S33: 0.1081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ROU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.713 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES PH 7.5, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.09350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.09350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.14350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 274 REMARK 465 ILE B 275 REMARK 465 VAL B 276 REMARK 465 PRO B 277 REMARK 465 VAL B 330 REMARK 465 PRO B 331 REMARK 465 GLY B 332 REMARK 465 LYS B 333 REMARK 465 GLN B 334 REMARK 465 ASP B 375 REMARK 465 VAL B 376 REMARK 465 ILE B 377 REMARK 465 ASP B 378 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ASP B 381 REMARK 465 GLN B 382 REMARK 465 TYR B 383 REMARK 465 ARG B 384 REMARK 465 LYS B 385 REMARK 465 THR B 386 REMARK 465 THR B 387 REMARK 465 PRO B 388 REMARK 465 GLN B 389 REMARK 465 GLU B 390 REMARK 465 SER B 453 REMARK 465 GLN B 454 REMARK 465 ARG B 498 REMARK 465 ASP B 499 REMARK 465 LEU B 500 REMARK 465 MET B 501 REMARK 465 ARG B 502 REMARK 465 ASP B 503 REMARK 465 HIS B 504 REMARK 465 LYS B 505 REMARK 465 ALA B 506 REMARK 465 CYS B 507 REMARK 465 LEU B 508 REMARK 465 PRO B 509 REMARK 465 VAL B 529 REMARK 465 ASN B 530 REMARK 465 ARG B 531 REMARK 465 PHE B 532 REMARK 465 PRO B 533 REMARK 465 GLY B 534 REMARK 465 SER B 535 REMARK 465 LYS B 536 REMARK 465 LEU B 537 REMARK 465 THR B 538 REMARK 465 GLU B 562 REMARK 465 ASP B 563 REMARK 465 LEU B 564 REMARK 465 VAL B 565 REMARK 465 GLU B 566 REMARK 465 ARG B 567 REMARK 465 CYS B 568 REMARK 465 SER B 569 REMARK 465 CYS B 570 REMARK 465 GLU B 571 REMARK 465 LYS B 582 REMARK 465 THR B 583 REMARK 465 ASP A 274 REMARK 465 ILE A 275 REMARK 465 VAL A 276 REMARK 465 VAL A 330 REMARK 465 PRO A 331 REMARK 465 GLY A 332 REMARK 465 LYS A 333 REMARK 465 GLN A 334 REMARK 465 ASP A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 ASP A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 465 ASP A 381 REMARK 465 GLN A 382 REMARK 465 TYR A 383 REMARK 465 ARG A 384 REMARK 465 LYS A 385 REMARK 465 THR A 386 REMARK 465 THR A 387 REMARK 465 PRO A 388 REMARK 465 GLN A 389 REMARK 465 GLU A 390 REMARK 465 ARG A 498 REMARK 465 ASP A 499 REMARK 465 LEU A 500 REMARK 465 MET A 501 REMARK 465 ARG A 502 REMARK 465 ASP A 503 REMARK 465 HIS A 504 REMARK 465 LYS A 505 REMARK 465 ALA A 506 REMARK 465 CYS A 507 REMARK 465 LEU A 508 REMARK 465 PRO A 509 REMARK 465 ASN A 530 REMARK 465 ARG A 531 REMARK 465 PHE A 532 REMARK 465 PRO A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 LYS A 536 REMARK 465 LEU A 537 REMARK 465 THR A 538 REMARK 465 GLU A 562 REMARK 465 ASP A 563 REMARK 465 LEU A 564 REMARK 465 VAL A 565 REMARK 465 GLU A 566 REMARK 465 ARG A 567 REMARK 465 CYS A 568 REMARK 465 SER A 569 REMARK 465 CYS A 570 REMARK 465 GLU A 571 REMARK 465 LYS A 582 REMARK 465 THR A 583 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 292 CG1 CG2 CD1 REMARK 470 LYS B 336 CG CD CE NZ REMARK 470 GLN B 338 CG CD OE1 NE2 REMARK 470 PHE B 339 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 GLU B 366 CG CD OE1 OE2 REMARK 470 LEU B 368 CG CD1 CD2 REMARK 470 LEU B 391 CG CD1 CD2 REMARK 470 LYS B 415 CG CD CE NZ REMARK 470 PHE B 417 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 424 CG CD OE1 NE2 REMARK 470 LEU B 425 CG CD1 CD2 REMARK 470 GLN B 432 CG CD OE1 NE2 REMARK 470 ARG B 436 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 451 CG CD NE CZ NH1 NH2 REMARK 470 SER B 452 OG REMARK 470 SER B 456 OG REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 458 CG OD1 OD2 REMARK 470 GLU B 461 CG CD OE1 OE2 REMARK 470 GLU B 462 CG CD OE1 OE2 REMARK 470 ASP B 473 CG OD1 OD2 REMARK 470 GLU B 477 CG CD OE1 OE2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 470 ARG B 541 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 572 CG1 CG2 REMARK 470 LYS B 575 CG CD CE NZ REMARK 470 HIS B 580 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 581 CG CD OE1 NE2 REMARK 470 PRO A 277 CG CD REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLN A 347 CG CD OE1 NE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 GLN A 359 CG CD OE1 NE2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 ASN A 396 CG OD1 ND2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 MET A 416 CG SD CE REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 ARG A 451 CG CD NE CZ NH1 NH2 REMARK 470 SER A 452 OG REMARK 470 SER A 453 OG REMARK 470 GLN A 454 CG CD OE1 NE2 REMARK 470 SER A 456 OG REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 458 CG OD1 OD2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 GLU A 462 CG CD OE1 OE2 REMARK 470 ASP A 473 CG OD1 OD2 REMARK 470 GLU A 477 CG CD OE1 OE2 REMARK 470 ASP A 478 CG OD1 OD2 REMARK 470 ASP A 510 CG OD1 OD2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 VAL A 529 CG1 CG2 REMARK 470 ARG A 541 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 561 CG OD1 OD2 REMARK 470 VAL A 572 CG1 CG2 REMARK 470 GLN A 581 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 294 NH2 ARG A 421 1655 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 361 N - CA - CB ANGL. DEV. = -26.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 347 77.60 57.46 REMARK 500 LYS B 415 54.06 -100.48 REMARK 500 PHE B 417 75.55 -118.00 REMARK 500 ASP B 458 -122.29 58.45 REMARK 500 GLN A 347 71.45 56.10 REMARK 500 SER A 361 -176.18 -69.69 REMARK 500 SER A 452 78.11 53.59 REMARK 500 TRP A 455 57.78 -149.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 348 SG REMARK 620 2 CYS B 351 SG 142.4 REMARK 620 3 HIS B 557 NE2 110.5 80.2 REMARK 620 4 CYS B 578 SG 110.2 89.8 124.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 348 SG REMARK 620 2 CYS A 351 SG 102.2 REMARK 620 3 HIS A 557 NE2 108.5 91.9 REMARK 620 4 CYS A 578 SG 112.0 122.8 117.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 DBREF 4ROU B 274 583 UNP O15091 MRRP3_HUMAN 274 583 DBREF 4ROU A 274 583 UNP O15091 MRRP3_HUMAN 274 583 SEQRES 1 B 310 ASP ILE VAL PRO MET LEU GLU THR LEU LYS ALA PHE PHE SEQRES 2 B 310 ASP PHE GLY LYS ASP ILE LYS ASP ASP ASN TYR SER ASN SEQRES 3 B 310 LYS LEU LEU ASP ILE LEU SER TYR LEU ARG ASN ASN GLN SEQRES 4 B 310 LEU TYR PRO GLY GLU SER PHE ALA HIS SER ILE LYS THR SEQRES 5 B 310 TRP PHE GLU SER VAL PRO GLY LYS GLN TRP LYS GLY GLN SEQRES 6 B 310 PHE THR THR VAL ARG LYS SER GLY GLN CYS SER GLY CYS SEQRES 7 B 310 GLY LYS THR ILE GLU SER ILE GLN LEU SER PRO GLU GLU SEQRES 8 B 310 TYR GLU CYS LEU LYS GLY LYS ILE MET ARG ASP VAL ILE SEQRES 9 B 310 ASP GLY GLY ASP GLN TYR ARG LYS THR THR PRO GLN GLU SEQRES 10 B 310 LEU LYS ARG PHE GLU ASN PHE ILE LYS SER ARG PRO PRO SEQRES 11 B 310 PHE ASP VAL VAL ILE ASP GLY LEU ASN VAL ALA LYS MET SEQRES 12 B 310 PHE PRO LYS VAL ARG GLU SER GLN LEU LEU LEU ASN VAL SEQRES 13 B 310 VAL SER GLN LEU ALA LYS ARG ASN LEU ARG LEU LEU VAL SEQRES 14 B 310 LEU GLY ARG LYS HIS MET LEU ARG ARG SER SER GLN TRP SEQRES 15 B 310 SER ARG ASP GLU MET GLU GLU VAL GLN LYS GLN ALA SER SEQRES 16 B 310 CYS PHE PHE ALA ASP ASP ILE SER GLU ASP ASP PRO PHE SEQRES 17 B 310 LEU LEU TYR ALA THR LEU HIS SER GLY ASN HIS CYS ARG SEQRES 18 B 310 PHE ILE THR ARG ASP LEU MET ARG ASP HIS LYS ALA CYS SEQRES 19 B 310 LEU PRO ASP ALA LYS THR GLN ARG LEU PHE PHE LYS TRP SEQRES 20 B 310 GLN GLN GLY HIS GLN LEU ALA ILE VAL ASN ARG PHE PRO SEQRES 21 B 310 GLY SER LYS LEU THR PHE GLN ARG ILE LEU SER TYR ASP SEQRES 22 B 310 THR VAL VAL GLN THR THR GLY ASP SER TRP HIS ILE PRO SEQRES 23 B 310 TYR ASP GLU ASP LEU VAL GLU ARG CYS SER CYS GLU VAL SEQRES 24 B 310 PRO THR LYS TRP LEU CYS LEU HIS GLN LYS THR SEQRES 1 A 310 ASP ILE VAL PRO MET LEU GLU THR LEU LYS ALA PHE PHE SEQRES 2 A 310 ASP PHE GLY LYS ASP ILE LYS ASP ASP ASN TYR SER ASN SEQRES 3 A 310 LYS LEU LEU ASP ILE LEU SER TYR LEU ARG ASN ASN GLN SEQRES 4 A 310 LEU TYR PRO GLY GLU SER PHE ALA HIS SER ILE LYS THR SEQRES 5 A 310 TRP PHE GLU SER VAL PRO GLY LYS GLN TRP LYS GLY GLN SEQRES 6 A 310 PHE THR THR VAL ARG LYS SER GLY GLN CYS SER GLY CYS SEQRES 7 A 310 GLY LYS THR ILE GLU SER ILE GLN LEU SER PRO GLU GLU SEQRES 8 A 310 TYR GLU CYS LEU LYS GLY LYS ILE MET ARG ASP VAL ILE SEQRES 9 A 310 ASP GLY GLY ASP GLN TYR ARG LYS THR THR PRO GLN GLU SEQRES 10 A 310 LEU LYS ARG PHE GLU ASN PHE ILE LYS SER ARG PRO PRO SEQRES 11 A 310 PHE ASP VAL VAL ILE ASP GLY LEU ASN VAL ALA LYS MET SEQRES 12 A 310 PHE PRO LYS VAL ARG GLU SER GLN LEU LEU LEU ASN VAL SEQRES 13 A 310 VAL SER GLN LEU ALA LYS ARG ASN LEU ARG LEU LEU VAL SEQRES 14 A 310 LEU GLY ARG LYS HIS MET LEU ARG ARG SER SER GLN TRP SEQRES 15 A 310 SER ARG ASP GLU MET GLU GLU VAL GLN LYS GLN ALA SER SEQRES 16 A 310 CYS PHE PHE ALA ASP ASP ILE SER GLU ASP ASP PRO PHE SEQRES 17 A 310 LEU LEU TYR ALA THR LEU HIS SER GLY ASN HIS CYS ARG SEQRES 18 A 310 PHE ILE THR ARG ASP LEU MET ARG ASP HIS LYS ALA CYS SEQRES 19 A 310 LEU PRO ASP ALA LYS THR GLN ARG LEU PHE PHE LYS TRP SEQRES 20 A 310 GLN GLN GLY HIS GLN LEU ALA ILE VAL ASN ARG PHE PRO SEQRES 21 A 310 GLY SER LYS LEU THR PHE GLN ARG ILE LEU SER TYR ASP SEQRES 22 A 310 THR VAL VAL GLN THR THR GLY ASP SER TRP HIS ILE PRO SEQRES 23 A 310 TYR ASP GLU ASP LEU VAL GLU ARG CYS SER CYS GLU VAL SEQRES 24 A 310 PRO THR LYS TRP LEU CYS LEU HIS GLN LYS THR HET ZN B 601 1 HET CL B 602 1 HET ZN A 601 1 HET CL A 602 1 HET CL A 603 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 3(CL 1-) FORMUL 8 HOH *9(H2 O) HELIX 1 1 MET B 278 LYS B 290 1 13 HELIX 2 2 ASP B 294 ASN B 311 1 18 HELIX 3 3 GLY B 316 GLU B 328 1 13 HELIX 4 4 SER B 361 MET B 373 1 13 HELIX 5 5 LYS B 392 SER B 400 1 9 HELIX 6 6 GLY B 410 LYS B 415 1 6 HELIX 7 7 ARG B 421 LYS B 435 1 15 HELIX 8 8 HIS B 447 ARG B 450 5 4 HELIX 9 9 ASP B 458 LYS B 465 1 8 HELIX 10 10 GLU B 477 GLY B 490 1 14 HELIX 11 11 ALA B 511 GLN B 525 1 15 HELIX 12 12 MET A 278 LYS A 290 1 13 HELIX 13 13 ASP A 294 ASN A 311 1 18 HELIX 14 14 GLY A 316 GLU A 328 1 13 HELIX 15 15 SER A 361 ARG A 374 1 14 HELIX 16 16 LYS A 392 SER A 400 1 9 HELIX 17 17 GLY A 410 ALA A 414 1 5 HELIX 18 18 ARG A 421 LYS A 435 1 15 HELIX 19 19 HIS A 447 ARG A 450 5 4 HELIX 20 20 SER A 456 LYS A 465 1 10 HELIX 21 21 GLU A 477 GLY A 490 1 14 HELIX 22 22 ALA A 511 GLN A 525 1 15 SHEET 1 A 4 LYS B 336 THR B 340 0 SHEET 2 A 4 LYS B 575 HIS B 580 -1 O CYS B 578 N GLN B 338 SHEET 3 A 4 SER B 555 TYR B 560 -1 N ILE B 558 O LEU B 577 SHEET 4 A 4 GLN B 550 THR B 551 -1 N GLN B 550 O HIS B 557 SHEET 1 B 4 SER B 468 ALA B 472 0 SHEET 2 B 4 LEU B 440 ARG B 445 1 N VAL B 442 O SER B 468 SHEET 3 B 4 VAL B 406 ASP B 409 1 N ILE B 408 O LEU B 441 SHEET 4 B 4 ARG B 494 ILE B 496 1 O ARG B 494 N VAL B 407 SHEET 1 C 4 LYS A 336 THR A 340 0 SHEET 2 C 4 LYS A 575 HIS A 580 -1 O TRP A 576 N THR A 340 SHEET 3 C 4 SER A 555 TYR A 560 -1 N ILE A 558 O LEU A 577 SHEET 4 C 4 GLN A 550 THR A 551 -1 N GLN A 550 O HIS A 557 SHEET 1 D 4 SER A 468 ALA A 472 0 SHEET 2 D 4 LEU A 440 ARG A 445 1 N VAL A 442 O SER A 468 SHEET 3 D 4 VAL A 406 ASP A 409 1 N ILE A 408 O LEU A 441 SHEET 4 D 4 ARG A 494 ILE A 496 1 O ARG A 494 N VAL A 407 LINK SG CYS B 348 ZN ZN B 601 1555 1555 2.28 LINK SG CYS B 351 ZN ZN B 601 1555 1555 2.29 LINK NE2 HIS B 557 ZN ZN B 601 1555 1555 2.51 LINK SG CYS B 578 ZN ZN B 601 1555 1555 2.45 LINK SG CYS A 348 ZN ZN A 601 1555 1555 2.52 LINK SG CYS A 351 ZN ZN A 601 1555 1555 2.45 LINK NE2 HIS A 557 ZN ZN A 601 1555 1555 2.16 LINK SG CYS A 578 ZN ZN A 601 1555 1555 2.38 CISPEP 1 GLY B 346 GLN B 347 0 8.02 CISPEP 2 ARG B 451 SER B 452 0 -1.83 CISPEP 3 ARG B 457 ASP B 458 0 -9.34 CISPEP 4 GLY A 346 GLN A 347 0 2.16 CISPEP 5 ARG A 451 SER A 452 0 -4.36 CISPEP 6 SER A 453 GLN A 454 0 12.03 SITE 1 AC1 4 CYS B 348 CYS B 351 HIS B 557 CYS B 578 SITE 1 AC2 4 CYS A 348 CYS A 351 HIS A 557 CYS A 578 CRYST1 66.434 78.287 114.187 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008758 0.00000