HEADER TRANSCRIPTION 30-OCT-14 4RPO TITLE PCPR INDUCER BINDING DOMAIN (COMPLEX WITH 2,4,6-TRICHLOROPHENOL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCP DEGRADATION TRANSCRIPTIONAL ACTIVATION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 85-307; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM CHLOROPHENOLICUM; SOURCE 3 ORGANISM_TAXID: 46429; SOURCE 4 GENE: PCPR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSR FAMILY TRANSCRIPTIONAL REGULATOR, INDUCER BINDING DOMAIN, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.HAYES,T.W.MOURAL,K.M.LEWIS,D.ONOFREI,L.XUN,C.KANG REVDAT 2 20-SEP-23 4RPO 1 REMARK REVDAT 1 26-NOV-14 4RPO 0 JRNL AUTH R.P.HAYES,T.W.MOURAL,K.M.LEWIS,D.ONOFREI,L.XUN,C.KANG JRNL TITL STRUCTURES OF THE INDUCER-BINDING DOMAIN OF JRNL TITL 2 PENTACHLOROPHENOL-DEGRADING GENE REGULATOR PCPR FROM JRNL TITL 3 SPHINGOBIUM CHLOROPHENOLICUM. JRNL REF INT J MOL SCI V. 15 20736 2014 JRNL REFN ESSN 1422-0067 JRNL PMID 25397598 JRNL DOI 10.3390/IJMS151120736 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 86287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6224 - 4.6977 1.00 6027 136 0.1471 0.1707 REMARK 3 2 4.6977 - 3.7291 1.00 6029 144 0.1441 0.1540 REMARK 3 3 3.7291 - 3.2578 1.00 6030 118 0.1677 0.2097 REMARK 3 4 3.2578 - 2.9600 1.00 6044 144 0.1852 0.2312 REMARK 3 5 2.9600 - 2.7479 1.00 6018 137 0.1946 0.2015 REMARK 3 6 2.7479 - 2.5859 1.00 6038 152 0.2064 0.2747 REMARK 3 7 2.5859 - 2.4564 1.00 5972 141 0.1998 0.2785 REMARK 3 8 2.4564 - 2.3494 1.00 6046 146 0.1998 0.2279 REMARK 3 9 2.3494 - 2.2590 1.00 5990 144 0.2012 0.2553 REMARK 3 10 2.2590 - 2.1810 1.00 6027 120 0.2095 0.2327 REMARK 3 11 2.1810 - 2.1128 1.00 6040 151 0.2115 0.2579 REMARK 3 12 2.1128 - 2.0524 1.00 6000 142 0.2211 0.2437 REMARK 3 13 2.0524 - 1.9984 1.00 6015 144 0.2272 0.2550 REMARK 3 14 1.9984 - 1.9500 1.00 6059 133 0.2351 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7240 REMARK 3 ANGLE : 1.143 9852 REMARK 3 CHIRALITY : 0.054 1090 REMARK 3 PLANARITY : 0.006 1289 REMARK 3 DIHEDRAL : 13.917 2661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86296 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RNS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM TARTRATE DIBASIC REMARK 280 DIHYDRATE, 20% W/V PEG 4,000, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.87550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.00289 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.70500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 84.87550 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 49.00289 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.70500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 84.87550 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 49.00289 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.70500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 98.00579 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 73.41000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 98.00579 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 73.41000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 98.00579 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 73.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 85 REMARK 465 SER A 86 REMARK 465 GLU A 87 REMARK 465 LEU A 88 REMARK 465 ARG B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 LEU B 88 REMARK 465 ARG C 85 REMARK 465 SER C 86 REMARK 465 GLU C 87 REMARK 465 LEU C 88 REMARK 465 ARG C 89 REMARK 465 GLU C 307 REMARK 465 ARG D 85 REMARK 465 SER D 86 REMARK 465 GLU D 87 REMARK 465 LEU D 88 REMARK 465 GLU D 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG D 134 O HOH D 617 1.83 REMARK 500 OD1 ASP A 91 O HOH A 585 1.87 REMARK 500 NH1 ARG D 253 OD1 ASN D 257 1.94 REMARK 500 O HOH A 604 O HOH A 634 1.95 REMARK 500 OD1 ASP A 286 O HOH A 566 1.96 REMARK 500 O HOH B 638 O HOH B 643 1.96 REMARK 500 O HOH B 548 O HOH D 603 1.98 REMARK 500 NE ARG B 253 O HOH B 566 2.00 REMARK 500 O HOH A 593 O HOH A 612 2.03 REMARK 500 O HOH C 524 O HOH C 531 2.05 REMARK 500 O HOH D 600 O HOH D 612 2.07 REMARK 500 OD1 ASN D 205 O HOH D 582 2.08 REMARK 500 OE1 GLU D 269 O HOH D 602 2.09 REMARK 500 O HOH B 624 O HOH D 591 2.09 REMARK 500 OE1 GLU A 274 O HOH A 629 2.10 REMARK 500 O HOH C 601 O HOH C 621 2.11 REMARK 500 NH2 ARG A 225 OE2 GLU B 120 2.11 REMARK 500 O HOH D 560 O HOH D 628 2.13 REMARK 500 O HOH C 571 O HOH C 581 2.13 REMARK 500 OE2 GLU C 203 O HOH C 549 2.14 REMARK 500 NE ARG C 134 O HOH C 596 2.15 REMARK 500 NE2 GLN D 302 O HOH D 567 2.16 REMARK 500 O HOH B 563 O HOH B 565 2.16 REMARK 500 O HOH A 601 O HOH A 630 2.16 REMARK 500 O HOH D 563 O HOH D 633 2.19 REMARK 500 NE ARG D 225 O HOH D 545 2.19 REMARK 500 O3 GOL A 403 O HOH A 625 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 173 CB CYS A 173 SG -0.101 REMARK 500 CYS C 173 CB CYS C 173 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 158 -75.38 -149.62 REMARK 500 LEU A 186 58.73 -113.01 REMARK 500 ASP A 242 32.01 -90.81 REMARK 500 PRO A 267 40.22 -85.85 REMARK 500 SER B 158 -76.05 -150.83 REMARK 500 ASP B 242 47.52 -88.07 REMARK 500 ALA C 123 64.81 -154.75 REMARK 500 SER C 158 -82.52 -146.42 REMARK 500 ALA C 159 109.52 -54.96 REMARK 500 LEU C 186 57.72 -119.91 REMARK 500 ALA C 201 -5.59 -142.79 REMARK 500 ASN C 257 -75.06 -53.98 REMARK 500 PRO C 267 33.31 -80.99 REMARK 500 ALA D 123 62.55 -152.27 REMARK 500 SER D 158 -60.27 -141.48 REMARK 500 ASP D 242 46.43 -90.02 REMARK 500 PHE D 301 54.95 -90.90 REMARK 500 PRO D 304 172.98 -58.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T6C A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T6C B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T6C C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T6C D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RNS RELATED DB: PDB REMARK 900 PCPR INDUCER BINDING DOMAIN (APO-FORM) REMARK 900 RELATED ID: 4RPN RELATED DB: PDB REMARK 900 PCPR INDUCER BINDING DOMAIN (COMPLEX WITH PENTACHLOROPHENOL) DBREF 4RPO A 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPO B 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPO C 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPO D 85 307 UNP P52679 PCPR_SPHCR 85 307 SEQRES 1 A 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 A 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 A 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 A 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 A 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 A 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 A 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 A 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 A 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 A 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 A 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 A 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 A 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 A 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 A 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 A 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 A 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 A 223 ALA GLU SEQRES 1 B 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 B 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 B 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 B 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 B 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 B 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 B 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 B 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 B 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 B 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 B 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 B 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 B 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 B 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 B 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 B 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 B 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 B 223 ALA GLU SEQRES 1 C 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 C 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 C 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 C 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 C 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 C 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 C 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 C 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 C 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 C 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 C 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 C 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 C 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 C 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 C 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 C 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 C 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 C 223 ALA GLU SEQRES 1 D 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 D 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 D 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 D 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 D 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 D 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 D 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 D 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 D 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 D 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 D 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 D 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 D 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 D 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 D 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 D 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 D 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 D 223 ALA GLU HET T6C A 401 10 HET GOL A 402 6 HET GOL A 403 6 HET T6C B 401 10 HET T6C C 401 10 HET DMS D 401 4 HET T6C D 402 10 HETNAM T6C 2,4,6-TRICHLOROPHENOL HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 T6C 4(C6 H3 CL3 O) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 10 DMS C2 H6 O S FORMUL 12 HOH *565(H2 O) HELIX 1 1 SER A 104 LEU A 112 1 9 HELIX 2 2 LEU A 115 ALA A 123 1 9 HELIX 3 3 PRO A 137 SER A 144 1 8 HELIX 4 4 PRO A 180 GLY A 185 1 6 HELIX 5 5 ASP A 187 CYS A 194 1 8 HELIX 6 6 ALA A 201 HIS A 206 5 6 HELIX 7 7 VAL A 207 LEU A 219 1 13 HELIX 8 8 PRO A 220 GLU A 222 5 3 HELIX 9 9 ASN A 230 THR A 241 1 12 HELIX 10 10 SER A 249 ASN A 257 1 9 HELIX 11 11 ARG A 282 ASP A 284 5 3 HELIX 12 12 ASP A 286 LYS A 298 1 13 HELIX 13 13 SER B 104 ALA B 123 1 20 HELIX 14 14 PRO B 137 SER B 144 1 8 HELIX 15 15 HIS B 179 THR B 183 5 5 HELIX 16 16 ASP B 187 CYS B 194 1 8 HELIX 17 17 ALA B 201 ASN B 205 5 5 HELIX 18 18 HIS B 206 VAL B 207 5 2 HELIX 19 19 HIS B 208 LEU B 219 1 12 HELIX 20 20 PRO B 220 GLU B 222 5 3 HELIX 21 21 ASN B 230 THR B 241 1 12 HELIX 22 22 SER B 249 ASN B 257 1 9 HELIX 23 23 ARG B 282 ASP B 284 5 3 HELIX 24 24 ASP B 286 LYS B 298 1 13 HELIX 25 25 SER C 104 ALA C 123 1 20 HELIX 26 26 PRO C 137 SER C 144 1 8 HELIX 27 27 HIS C 179 THR C 183 5 5 HELIX 28 28 ASP C 187 CYS C 194 1 8 HELIX 29 29 ALA C 201 HIS C 206 5 6 HELIX 30 30 VAL C 207 LEU C 219 1 13 HELIX 31 31 PRO C 220 GLU C 222 5 3 HELIX 32 32 ASN C 230 THR C 241 1 12 HELIX 33 33 SER C 249 GLY C 259 1 11 HELIX 34 34 ARG C 282 ASP C 284 5 3 HELIX 35 35 ASP C 286 LYS C 298 1 13 HELIX 36 36 SER D 104 ALA D 123 1 20 HELIX 37 37 PRO D 137 SER D 144 1 8 HELIX 38 38 HIS D 179 THR D 183 5 5 HELIX 39 39 ASP D 187 CYS D 194 1 8 HELIX 40 40 ALA D 201 ASN D 205 5 5 HELIX 41 41 HIS D 206 VAL D 207 5 2 HELIX 42 42 HIS D 208 LEU D 219 1 12 HELIX 43 43 PRO D 220 GLU D 222 5 3 HELIX 44 44 ASN D 230 THR D 241 1 12 HELIX 45 45 SER D 249 ASN D 257 1 9 HELIX 46 46 ARG D 282 ASP D 284 5 3 HELIX 47 47 ASP D 286 ILE D 299 1 14 SHEET 1 A10 ILE A 161 GLU A 169 0 SHEET 2 A10 ILE A 273 HIS A 280 -1 O VAL A 275 N PHE A 167 SHEET 3 A10 ILE A 149 GLY A 152 -1 N GLY A 152 O LYS A 276 SHEET 4 A10 ASN A 98 ALA A 102 1 N ALA A 102 O PHE A 151 SHEET 5 A10 ARG A 127 VAL A 131 1 O THR A 129 N PHE A 99 SHEET 6 A10 ILE B 224 THR B 228 1 O THR B 227 N GLY A 130 SHEET 7 A10 ARG B 195 VAL B 199 1 N ILE B 198 O PHE B 226 SHEET 8 A10 VAL B 243 PRO B 248 1 O ILE B 244 N ARG B 195 SHEET 9 A10 TYR B 171 ARG B 176 -1 N VAL B 172 O ILE B 247 SHEET 10 A10 LEU B 261 PHE B 264 -1 O PHE B 264 N CYS B 173 SHEET 1 B10 LEU A 261 PHE A 264 0 SHEET 2 B10 TYR A 171 ARG A 176 -1 N CYS A 173 O PHE A 264 SHEET 3 B10 VAL A 243 PRO A 248 -1 O LEU A 245 N VAL A 174 SHEET 4 B10 ARG A 195 VAL A 199 1 N ARG A 195 O ILE A 244 SHEET 5 B10 ILE A 224 THR A 228 1 O PHE A 226 N ILE A 198 SHEET 6 B10 ARG B 127 VAL B 131 1 O GLY B 130 N THR A 227 SHEET 7 B10 ASN B 98 ALA B 102 1 N PHE B 99 O THR B 129 SHEET 8 B10 ILE B 149 GLY B 152 1 O PHE B 151 N ALA B 102 SHEET 9 B10 ILE B 273 HIS B 280 -1 O LYS B 276 N GLY B 152 SHEET 10 B10 ILE B 161 GLU B 169 -1 N LYS B 162 O TRP B 279 SHEET 1 C10 ILE C 161 GLU C 169 0 SHEET 2 C10 ILE C 273 HIS C 280 -1 O VAL C 275 N PHE C 167 SHEET 3 C10 ILE C 149 GLY C 152 -1 N GLY C 152 O LYS C 276 SHEET 4 C10 ASN C 98 ALA C 102 1 N ALA C 102 O PHE C 151 SHEET 5 C10 ARG C 127 VAL C 131 1 O THR C 129 N ILE C 101 SHEET 6 C10 ILE D 224 THR D 228 1 O THR D 227 N GLY C 130 SHEET 7 C10 ARG D 195 VAL D 199 1 N ILE D 198 O PHE D 226 SHEET 8 C10 VAL D 243 PRO D 248 1 O ILE D 244 N ARG D 195 SHEET 9 C10 TYR D 171 ARG D 176 -1 N VAL D 172 O ILE D 247 SHEET 10 C10 LEU D 261 PHE D 264 -1 O PHE D 264 N CYS D 173 SHEET 1 D 3 LEU C 245 PRO C 248 0 SHEET 2 D 3 TYR C 171 ARG C 176 -1 N VAL C 172 O ILE C 247 SHEET 3 D 3 LEU C 261 PHE C 264 -1 O PHE C 264 N CYS C 173 SHEET 1 E 7 HIS C 196 VAL C 199 0 SHEET 2 E 7 ILE C 224 THR C 228 1 O ARG C 225 N HIS C 196 SHEET 3 E 7 ARG D 127 VAL D 131 1 O GLY D 130 N THR C 227 SHEET 4 E 7 ASN D 98 ALA D 102 1 N PHE D 99 O THR D 129 SHEET 5 E 7 ILE D 149 GLY D 152 1 O PHE D 151 N ALA D 102 SHEET 6 E 7 ILE D 273 HIS D 280 -1 O LYS D 276 N GLY D 152 SHEET 7 E 7 ILE D 161 GLU D 169 -1 N LYS D 162 O TRP D 279 SITE 1 AC1 11 SER A 104 PHE A 106 GLY A 107 PHE A 151 SITE 2 AC1 11 GLY A 152 PHE A 167 GLU A 169 HIS A 206 SITE 3 AC1 11 PHE A 231 PRO A 248 HOH A 505 SITE 1 AC2 6 TRP A 254 PHE A 255 ASN A 257 ARG A 258 SITE 2 AC2 6 GLU B 239 ARG B 258 SITE 1 AC3 4 ALA A 109 ARG A 114 TRP A 254 HOH A 625 SITE 1 AC4 10 SER B 104 PHE B 106 GLY B 107 PHE B 151 SITE 2 AC4 10 GLY B 152 PHE B 167 GLU B 169 HIS B 206 SITE 3 AC4 10 PHE B 231 HOH B 502 SITE 1 AC5 10 SER C 104 PHE C 106 GLY C 107 PHE C 151 SITE 2 AC5 10 GLY C 152 PHE C 167 GLU C 169 HIS C 206 SITE 3 AC5 10 PHE C 231 HOH C 501 SITE 1 AC6 3 ALA D 109 ARG D 114 TRP D 254 SITE 1 AC7 9 SER D 104 GLY D 107 PHE D 151 GLY D 152 SITE 2 AC7 9 PHE D 167 GLU D 169 HIS D 206 PHE D 231 SITE 3 AC7 9 HOH D 522 CRYST1 169.751 169.751 110.115 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005891 0.003401 0.000000 0.00000 SCALE2 0.000000 0.006802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009081 0.00000