HEADER SIGNALING PROTEIN 31-OCT-14 4RPW OBSLTE 19-SEP-18 4RPW 6BAF TITLE CRYSTAL STRUCTURE OF THE CHROMOPHORE-BINDING DOMAIN OF STIGMATELLA TITLE 2 AURANTIACA BACTERIOPHYTOCHROME (WILD-TYPE) IN THE PR STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTORECEPTOR-HISTIDINE KINASE BPHP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-328; COMPND 5 SYNONYM: SENSOR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STIGMATELLA AURANTIACA; SOURCE 3 ORGANISM_TAXID: 378806; SOURCE 4 STRAIN: DW4/3-1; SOURCE 5 GENE: STAUR_8015, STIAU_3396; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28C+ KEYWDS BACTERIOPHYTOCHROME, PHYTOCHROME, BILIVERDIN, MYXOBACTERIA, PAS, GAF, KEYWDS 2 LIGHT-MEDIATED SIGNAL TRANSDUCTION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.WOITOWICH,A.S.HALAVATY,K.D.GALLAGHER,A.C.NUGENT,H.PATEL,P.DUONG, AUTHOR 2 S.E.KOVALEVA,S.ST.PETER,W.B.OZAROWSKI,C.N.HERNANDEZ,E.A.STOJKOVIC REVDAT 4 19-SEP-18 4RPW 1 OBSLTE REVDAT 3 31-JAN-18 4RPW 1 AUTHOR JRNL REVDAT 2 24-JAN-18 4RPW 1 JRNL REVDAT 1 11-MAY-16 4RPW 0 JRNL AUTH N.C.WOITOWICH,A.S.HALAVATY,K.D.GALLAGHER,A.C.NUGENT,H.PATEL, JRNL AUTH 2 P.DUONG,S.E.KOVALEVA,S.ST.PETER,W.B.OZAROWSKI,C.N.HERNANDEZ, JRNL AUTH 3 E.A.STOJKOVIC JRNL TITL CRYSTAL STRUCTURE OF THE CHROMOPHORE-BINDING DOMAIN OF JRNL TITL 2 STIGMATELLA AURANTIACA BACTERIOPHYTOCHROME (WILD-TYPE) IN JRNL TITL 3 THE PR STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 23952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : -1.85000 REMARK 3 B33 (A**2) : 5.99000 REMARK 3 B12 (A**2) : -1.85000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.284 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2663 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2569 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3604 ; 1.909 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5896 ; 1.636 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 1.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;24.821 ;22.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;10.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;12.635 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2982 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -49.1108 25.1637 -35.5356 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.1750 REMARK 3 T33: 0.0937 T12: -0.0387 REMARK 3 T13: -0.0739 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 2.8140 L22: 3.4243 REMARK 3 L33: 2.6511 L12: 0.3902 REMARK 3 L13: -0.4106 L23: -0.5192 REMARK 3 S TENSOR REMARK 3 S11: -0.1635 S12: 0.0561 S13: -0.0265 REMARK 3 S21: 0.0179 S22: 0.0898 S23: -0.3890 REMARK 3 S31: -0.1399 S32: 0.2453 S33: 0.0736 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -46.6265 16.1466 -33.7381 REMARK 3 T TENSOR REMARK 3 T11: 0.3943 T22: 0.3042 REMARK 3 T33: 0.2737 T12: -0.0003 REMARK 3 T13: -0.0457 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.9028 L22: 6.2635 REMARK 3 L33: 1.8174 L12: 0.9026 REMARK 3 L13: -1.9924 L23: 0.7205 REMARK 3 S TENSOR REMARK 3 S11: -0.4023 S12: -0.2708 S13: -0.5567 REMARK 3 S21: 0.3294 S22: 0.2482 S23: -0.9556 REMARK 3 S31: 0.3869 S32: 0.4287 S33: 0.1541 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): -68.3240 3.9439 -21.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.2038 REMARK 3 T33: 0.1661 T12: 0.0617 REMARK 3 T13: 0.0824 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.5240 L22: 2.7466 REMARK 3 L33: 1.3298 L12: -0.5725 REMARK 3 L13: -0.5098 L23: 0.6257 REMARK 3 S TENSOR REMARK 3 S11: -0.1937 S12: -0.1329 S13: -0.2530 REMARK 3 S21: 0.3242 S22: 0.0124 S23: 0.4608 REMARK 3 S31: 0.0868 S32: -0.1417 S33: 0.1813 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): -72.3119 12.0983 -9.3806 REMARK 3 T TENSOR REMARK 3 T11: 0.5103 T22: 0.4915 REMARK 3 T33: 0.3269 T12: -0.1262 REMARK 3 T13: 0.2551 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 4.6253 L22: 10.3664 REMARK 3 L33: 1.3742 L12: -4.1870 REMARK 3 L13: -2.1713 L23: 1.1156 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: -0.5542 S13: 0.0897 REMARK 3 S21: 0.6828 S22: -0.1394 S23: -0.4183 REMARK 3 S31: 0.2732 S32: 0.1452 S33: 0.2694 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -63.5660 24.4167 -24.2821 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.2218 REMARK 3 T33: 0.0084 T12: 0.0834 REMARK 3 T13: -0.0110 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.2457 L22: 4.6580 REMARK 3 L33: 2.2616 L12: -0.1744 REMARK 3 L13: -0.6120 L23: -0.3038 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: -0.1441 S13: -0.0262 REMARK 3 S21: 0.3184 S22: -0.0224 S23: 0.0779 REMARK 3 S31: -0.2174 S32: -0.0591 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): -64.0677 22.9109 -24.4378 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.2360 REMARK 3 T33: 0.0588 T12: 0.0708 REMARK 3 T13: -0.0549 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.6364 L22: 2.4030 REMARK 3 L33: 0.8062 L12: 0.3322 REMARK 3 L13: -1.1350 L23: -0.2936 REMARK 3 S TENSOR REMARK 3 S11: -0.2065 S12: -0.0545 S13: 0.0795 REMARK 3 S21: 0.1953 S22: 0.1567 S23: 0.2354 REMARK 3 S31: -0.0986 S32: -0.0344 S33: 0.0499 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 288 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -63.0300 8.3427 -23.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.3156 T22: 0.1438 REMARK 3 T33: 0.0818 T12: 0.0667 REMARK 3 T13: 0.0650 T23: 0.0695 REMARK 3 L TENSOR REMARK 3 L11: 3.2362 L22: 3.9714 REMARK 3 L33: 5.2646 L12: 0.4381 REMARK 3 L13: 0.3419 L23: 2.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.2059 S12: -0.1564 S13: -0.3489 REMARK 3 S21: 0.2046 S22: -0.0404 S23: 0.2088 REMARK 3 S31: 0.1636 S32: -0.0517 S33: 0.2463 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -69.5715 23.8541 -17.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.4491 T22: 0.2964 REMARK 3 T33: 0.2579 T12: 0.0771 REMARK 3 T13: 0.0802 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 18.2384 L22: 2.1532 REMARK 3 L33: 7.6726 L12: -2.3593 REMARK 3 L13: -0.6604 L23: -3.5098 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.3752 S13: -0.4162 REMARK 3 S21: 0.3152 S22: 0.4277 S23: 0.4284 REMARK 3 S31: -0.5119 S32: -0.7299 S33: -0.4073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 2OOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25-28 MG ML-1 IN 10 MM TRIS REMARK 280 HCL (PH 8.0) AND 10 MM NACL. CRYSTALLIZATION CONDITIONS: 65 MM REMARK 280 TRIS-HCL, PH 8.5, 5.2% (W/V) PEG 8000, 35% (W/V) GLYCEROL , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.98400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.49200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.49200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.98400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -64.98400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 GLU A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 320 REMARK 465 GLY A 321 REMARK 465 ASN A 322 REMARK 465 GLU A 323 REMARK 465 ASP A 324 REMARK 465 TYR A 325 REMARK 465 ASP A 326 REMARK 465 GLN A 327 REMARK 465 ARG A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 18 CBC BLA A 401 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 130 -75.45 -26.29 REMARK 500 PHE A 134 -6.45 81.35 REMARK 500 ARG A 295 78.53 -156.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RQ9 RELATED DB: PDB DBREF 4RPW A 1 328 UNP Q097N3 Q097N3_STIAD 1 328 SEQADV 4RPW MET A -19 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW GLY A -18 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW SER A -17 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW SER A -16 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -15 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -14 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -13 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -12 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -11 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A -10 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW SER A -9 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW SER A -8 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW GLY A -7 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW LEU A -6 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW VAL A -5 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW PRO A -4 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW ARG A -3 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW GLY A -2 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW SER A -1 UNP Q097N3 EXPRESSION TAG SEQADV 4RPW HIS A 0 UNP Q097N3 EXPRESSION TAG SEQRES 1 A 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 348 LEU VAL PRO ARG GLY SER HIS MET SER THR GLU ALA SER SEQRES 3 A 348 ARG SER GLY LYS GLN GLU VAL ASP LEU THR ASN CYS ASP SEQRES 4 A 348 ARG GLU PRO ILE HIS ILE PRO GLY ALA ILE GLN PRO HIS SEQRES 5 A 348 GLY VAL LEU LEU VAL LEU SER GLU PRO GLY LEU VAL LEU SEQRES 6 A 348 THR HIS ALA SER GLU ASN ALA PRO ALA VAL LEU GLY ASN SEQRES 7 A 348 SER ALA GLU GLN LEU LEU GLY ALA PRO LEU GLY HIS PHE SEQRES 8 A 348 ILE GLU PRO SER VAL ARG GLU PRO LEU GLU ALA ASP LEU SEQRES 9 A 348 ARG SER ALA ARG LEU LYS GLN LEU ASN PRO LEU LYS VAL SEQRES 10 A 348 VAL TRP ARG VAL ASP GLY VAL ASP ARG PHE PHE ASP GLY SEQRES 11 A 348 ILE ALA HIS ARG HIS GLN GLY ARG LEU ILE LEU GLU LEU SEQRES 12 A 348 GLU PRO SER SER HIS ARG GLU ALA VAL PRO PHE LEU SER SEQRES 13 A 348 PHE PHE HIS ALA VAL ARG ASP GLY LEU SER ARG LEU ARG SEQRES 14 A 348 ASP ALA ARG ASP LEU GLN GLU LEU CYS GLU ALA VAL VAL SEQRES 15 A 348 GLN GLU VAL ARG GLY LEU THR GLY PHE ASP ARG ALA ILE SEQRES 16 A 348 ILE TYR ARG PHE ASP ALA GLU TRP ASN GLY SER VAL ILE SEQRES 17 A 348 ALA GLU ALA ARG ASP ALA ARG ALA ASP PRO TYR LEU GLY SEQRES 18 A 348 LEU HIS PHE PRO ALA SER ASP ILE PRO ARG GLN ALA ARG SEQRES 19 A 348 GLU LEU TYR GLN LEU ASN TRP LEU ARG ILE ILE PRO THR SEQRES 20 A 348 ILE ASP TYR GLN PRO ALA ARG VAL ARG ALA LEU PRO GLY SEQRES 21 A 348 HIS GLY GLU PRO LEU ASP LEU SER PHE SER VAL LEU ARG SEQRES 22 A 348 SER VAL SER PRO ILE HIS LEU GLU TYR LEU HIS ASN MET SEQRES 23 A 348 GLY VAL GLN ALA SER MET SER ILE SER LEU MET LYS ASP SEQRES 24 A 348 GLY LYS LEU TRP GLY LEU ILE SER CYS THR GLN VAL SER SEQRES 25 A 348 GLY THR ARG TYR VAL PRO TYR GLU VAL ARG THR ALA CYS SEQRES 26 A 348 GLU PHE LEU GLY GLU VAL MET SER SER LEU LEU ALA ALA SEQRES 27 A 348 LYS GLU GLY ASN GLU ASP TYR ASP GLN ARG HET BLA A 401 43 HET PG4 A 402 26 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET GOL A 411 6 HET GOL A 412 6 HET GOL A 413 6 HETNAM BLA BILIVERDINE IX ALPHA HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BLA C33 H34 N4 O6 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 GOL 11(C3 H8 O3) FORMUL 15 HOH *69(H2 O) HELIX 1 1 ASN A 17 GLU A 21 5 5 HELIX 2 2 ASN A 51 LEU A 56 1 6 HELIX 3 3 SER A 59 LEU A 64 1 6 HELIX 4 4 PRO A 67 ILE A 72 5 6 HELIX 5 5 GLU A 73 SER A 86 1 14 HELIX 6 6 LEU A 89 ASN A 93 5 5 HELIX 7 7 PHE A 134 ALA A 151 1 18 HELIX 8 8 ASP A 153 GLY A 170 1 18 HELIX 9 9 PRO A 205 ILE A 209 5 5 HELIX 10 10 PRO A 210 ASN A 220 1 11 HELIX 11 11 SER A 256 MET A 266 1 11 HELIX 12 12 PRO A 298 ALA A 317 1 20 SHEET 1 A 7 ALA A 28 ILE A 29 0 SHEET 2 A 7 ALA A 233 ALA A 237 -1 O ALA A 233 N ILE A 29 SHEET 3 A 7 LEU A 45 SER A 49 -1 N ALA A 48 O ARG A 236 SHEET 4 A 7 VAL A 34 LEU A 38 -1 N LEU A 35 O SER A 49 SHEET 5 A 7 ARG A 118 PRO A 125 -1 O LEU A 119 N LEU A 38 SHEET 6 A 7 PHE A 107 HIS A 115 -1 N ASP A 109 O GLU A 124 SHEET 7 A 7 LEU A 95 VAL A 98 -1 N LEU A 95 O GLY A 110 SHEET 1 B 6 HIS A 203 PHE A 204 0 SHEET 2 B 6 GLY A 185 ARG A 192 -1 N GLY A 185 O PHE A 204 SHEET 3 B 6 ARG A 173 PHE A 179 -1 N ARG A 178 O SER A 186 SHEET 4 B 6 LYS A 281 GLN A 290 -1 O SER A 287 N ILE A 175 SHEET 5 B 6 ALA A 270 LYS A 278 -1 N LEU A 276 O TRP A 283 SHEET 6 B 6 LEU A 222 ILE A 225 -1 N ILE A 225 O SER A 271 CISPEP 1 GLU A 40 PRO A 41 0 1.95 CISPEP 2 ASN A 93 PRO A 94 0 0.62 SITE 1 AC1 20 CYS A 18 TYR A 199 PHE A 204 ASP A 208 SITE 2 AC1 20 ILE A 209 PRO A 210 ALA A 213 TYR A 217 SITE 3 AC1 20 ARG A 253 VAL A 255 SER A 256 ILE A 258 SITE 4 AC1 20 HIS A 259 TYR A 262 MET A 266 SER A 271 SITE 5 AC1 20 SER A 273 HOH A 534 HOH A 543 HOH A 554 SITE 1 AC2 5 ILE A 25 VAL A 235 ARG A 236 ALA A 237 SITE 2 AC2 5 GLY A 242 SITE 1 AC3 3 ASP A 109 SER A 127 PHE A 134 SITE 1 AC4 5 ILE A 228 ASP A 229 LEU A 260 GLU A 261 SITE 2 AC4 5 HIS A 264 SITE 1 AC5 3 ARG A 149 ASP A 279 ALA A 317 SITE 1 AC6 3 HIS A 70 ARG A 77 HOH A 504 SITE 1 AC7 3 LYS A 90 LEU A 219 TRP A 221 SITE 1 AC8 3 ARG A 114 HIS A 115 PHE A 249 SITE 1 AC9 2 ARG A 295 GOL A 413 SITE 1 BC1 5 TRP A 183 ARG A 211 ARG A 214 GLN A 218 SITE 2 BC1 5 GOL A 411 SITE 1 BC2 3 TRP A 183 ARG A 211 GOL A 410 SITE 1 BC3 3 HIS A 115 ASP A 246 SER A 248 SITE 1 BC4 3 GLY A 167 GLY A 170 GOL A 409 CRYST1 131.471 131.471 97.476 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007606 0.004391 0.000000 0.00000 SCALE2 0.000000 0.008783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010259 0.00000