HEADER TRANSFERASE 31-OCT-14 4RQB TITLE CRYSTAL STRUCTURE OF A HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE (TARGET TITLE 2 ID NYSGRC-029686) FROM STAPHYLOCOCCUS AUREUS (TETRAGONAL SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 451516; SOURCE 4 STRAIN: USA300_TCH1516; SOURCE 5 GENE: HPT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS PRTASE, NYSGRC, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 2 (NYSGRC) REVDAT 3 06-DEC-23 4RQB 1 REMARK REVDAT 2 20-SEP-23 4RQB 1 REMARK SEQADV LINK REVDAT 1 26-NOV-14 4RQB 0 JRNL AUTH A.GHOSH,A.AHMED,R.BHOSHLE,R.SEIDEL,M.STEAD,R.TORO, JRNL AUTH 2 V.L.SCHRAMM,S.C.ALMO, JRNL AUTH 3 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF A HYPOXANTHINE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE (TARGET ID NYSGRC-029686) FROM JRNL TITL 3 STAPHYLOCOCCUS AUREUS (TETRAGONAL SPACE GROUP) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2857 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2970 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2933 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4009 ; 2.096 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6800 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;37.039 ;25.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;16.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3237 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 575 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 1.992 ; 1.986 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1461 ; 1.985 ; 1.984 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 3.342 ; 2.960 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 3.168 ; 2.429 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 7 REMARK 3 RESIDUE RANGE : A 8 A 80 REMARK 3 RESIDUE RANGE : A 81 A 157 REMARK 3 RESIDUE RANGE : A 158 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9736 50.2554 4.4755 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0119 REMARK 3 T33: 0.0836 T12: -0.0078 REMARK 3 T13: 0.0335 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.9712 L22: 0.4198 REMARK 3 L33: 0.7125 L12: 0.0267 REMARK 3 L13: 0.4026 L23: 0.1933 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0549 S13: -0.0047 REMARK 3 S21: 0.0117 S22: 0.0200 S23: 0.0224 REMARK 3 S31: -0.0633 S32: -0.0243 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 10 REMARK 3 RESIDUE RANGE : B 11 B 57 REMARK 3 RESIDUE RANGE : B 58 B 104 REMARK 3 RESIDUE RANGE : B 105 B 183 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4460 54.2372 -14.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.0962 REMARK 3 T33: 0.0696 T12: -0.0046 REMARK 3 T13: 0.0440 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.7445 L22: 1.0178 REMARK 3 L33: 0.8129 L12: -0.4019 REMARK 3 L13: -0.0340 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: 0.2064 S13: 0.0986 REMARK 3 S21: -0.1575 S22: -0.1105 S23: -0.1193 REMARK 3 S31: -0.1544 S32: 0.0434 S33: 0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. UNMODELED DENSITIES PRESENT NEAR THR112 OF BOTH REMARK 3 PROTOMERS (CHAIN A AND B) REMARK 4 REMARK 4 4RQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4RQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 1.26 M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.39500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.62200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.62200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.19750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.62200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.62200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.59250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.62200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.62200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.19750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.62200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.62200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.59250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 MSE B 3 REMARK 465 ASN B 4 REMARK 465 SER B 5 REMARK 465 SER B 184 REMARK 465 ASN B 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 66 CB SER B 66 OG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 52 CG - SE - CE ANGL. DEV. = -25.5 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 131 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 58.29 -97.25 REMARK 500 GLU A 108 -100.58 -125.66 REMARK 500 GLU A 167 -3.37 74.14 REMARK 500 TYR A 169 -5.56 85.12 REMARK 500 SER A 184 -178.63 -69.18 REMARK 500 ASP B 62 58.64 -99.92 REMARK 500 GLU B 108 -97.01 -127.96 REMARK 500 ASP B 155 45.70 -88.81 REMARK 500 GLU B 167 -9.00 73.33 REMARK 500 TYR B 169 -1.84 80.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029686 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4RQA RELATED DB: PDB DBREF 4RQB A 1 185 UNP A8YZK8 A8YZK8_STAAT 1 185 DBREF 4RQB B 1 185 UNP A8YZK8 A8YZK8_STAAT 1 185 SEQADV 4RQB SER A 0 UNP A8YZK8 EXPRESSION TAG SEQADV 4RQB SER B 0 UNP A8YZK8 EXPRESSION TAG SEQRES 1 A 186 SER MSE GLU MSE ASN SER VAL MSE HIS ASN ASP LEU LYS SEQRES 2 A 186 GLU VAL LEU LEU THR GLU GLU ASP ILE GLN ASN ILE CYS SEQRES 3 A 186 LYS GLU LEU GLY ALA GLN LEU THR LYS ASP TYR GLN GLY SEQRES 4 A 186 LYS PRO LEU VAL CYS VAL GLY ILE LEU LYS GLY SER ALA SEQRES 5 A 186 MSE PHE MSE SER ASP LEU ILE LYS ARG ILE ASP THR HIS SEQRES 6 A 186 LEU SER ILE ASP PHE MSE ASP VAL SER SER TYR HIS GLY SEQRES 7 A 186 GLY THR GLU SER THR GLY GLU VAL GLN ILE ILE LYS ASP SEQRES 8 A 186 LEU GLY SER SER ILE GLU ASN LYS ASP VAL LEU ILE ILE SEQRES 9 A 186 GLU ASP ILE LEU GLU THR GLY THR THR LEU LYS SER ILE SEQRES 10 A 186 THR GLU LEU LEU GLN SER ARG LYS VAL ASN SER LEU GLU SEQRES 11 A 186 ILE VAL THR LEU LEU ASP LYS PRO ASN ARG ARG LYS ALA SEQRES 12 A 186 ASP ILE GLU ALA LYS TYR VAL GLY LYS LYS ILE PRO ASP SEQRES 13 A 186 GLU PHE VAL VAL GLY TYR GLY LEU ASP TYR ARG GLU LEU SEQRES 14 A 186 TYR ARG ASN LEU PRO TYR ILE GLY THR LEU LYS PRO GLU SEQRES 15 A 186 VAL TYR SER ASN SEQRES 1 B 186 SER MSE GLU MSE ASN SER VAL MSE HIS ASN ASP LEU LYS SEQRES 2 B 186 GLU VAL LEU LEU THR GLU GLU ASP ILE GLN ASN ILE CYS SEQRES 3 B 186 LYS GLU LEU GLY ALA GLN LEU THR LYS ASP TYR GLN GLY SEQRES 4 B 186 LYS PRO LEU VAL CYS VAL GLY ILE LEU LYS GLY SER ALA SEQRES 5 B 186 MSE PHE MSE SER ASP LEU ILE LYS ARG ILE ASP THR HIS SEQRES 6 B 186 LEU SER ILE ASP PHE MSE ASP VAL SER SER TYR HIS GLY SEQRES 7 B 186 GLY THR GLU SER THR GLY GLU VAL GLN ILE ILE LYS ASP SEQRES 8 B 186 LEU GLY SER SER ILE GLU ASN LYS ASP VAL LEU ILE ILE SEQRES 9 B 186 GLU ASP ILE LEU GLU THR GLY THR THR LEU LYS SER ILE SEQRES 10 B 186 THR GLU LEU LEU GLN SER ARG LYS VAL ASN SER LEU GLU SEQRES 11 B 186 ILE VAL THR LEU LEU ASP LYS PRO ASN ARG ARG LYS ALA SEQRES 12 B 186 ASP ILE GLU ALA LYS TYR VAL GLY LYS LYS ILE PRO ASP SEQRES 13 B 186 GLU PHE VAL VAL GLY TYR GLY LEU ASP TYR ARG GLU LEU SEQRES 14 B 186 TYR ARG ASN LEU PRO TYR ILE GLY THR LEU LYS PRO GLU SEQRES 15 B 186 VAL TYR SER ASN MODRES 4RQB MSE A 3 MET SELENOMETHIONINE MODRES 4RQB MSE A 7 MET SELENOMETHIONINE MODRES 4RQB MSE A 52 MET SELENOMETHIONINE MODRES 4RQB MSE A 54 MET SELENOMETHIONINE MODRES 4RQB MSE A 70 MET SELENOMETHIONINE MODRES 4RQB MSE B 7 MET SELENOMETHIONINE MODRES 4RQB MSE B 52 MET SELENOMETHIONINE MODRES 4RQB MSE B 54 MET SELENOMETHIONINE MODRES 4RQB MSE B 70 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 7 8 HET MSE A 52 13 HET MSE A 54 8 HET MSE A 70 8 HET MSE B 7 8 HET MSE B 52 13 HET MSE B 54 8 HET MSE B 70 8 HET SO4 A 201 5 HET UNL A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET GOL A 205 6 HET SO4 B 201 5 HET CL B 202 1 HET GOL B 203 6 HET GOL B 204 6 HET UNL B 205 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 13 HOH *67(H2 O) HELIX 1 1 SER A 5 ASN A 9 5 5 HELIX 2 2 THR A 17 GLN A 37 1 21 HELIX 3 3 GLY A 49 LYS A 59 1 11 HELIX 4 4 GLY A 110 SER A 122 1 13 HELIX 5 5 PRO A 137 ARG A 140 5 4 HELIX 6 6 LYS A 179 SER A 184 1 6 HELIX 7 7 MSE B 7 ASN B 9 5 3 HELIX 8 8 THR B 17 GLN B 37 1 21 HELIX 9 9 GLY B 49 LYS B 59 1 11 HELIX 10 10 GLY B 110 SER B 122 1 13 HELIX 11 11 PRO B 137 ARG B 140 5 4 HELIX 12 12 PRO B 180 TYR B 183 5 4 SHEET 1 A 3 LEU A 11 LEU A 16 0 SHEET 2 A 3 ILE A 175 LEU A 178 -1 O ILE A 175 N LEU A 16 SHEET 3 A 3 VAL A 158 VAL A 159 -1 N VAL A 159 O GLY A 176 SHEET 1 B 6 GLU A 80 LYS A 89 0 SHEET 2 B 6 LEU A 65 GLY A 77 -1 N ASP A 71 O LYS A 89 SHEET 3 B 6 LEU A 41 ILE A 46 1 N CYS A 43 O SER A 66 SHEET 4 B 6 ASP A 99 LEU A 107 1 O ILE A 103 N VAL A 44 SHEET 5 B 6 SER A 127 ASP A 135 1 O GLU A 129 N ILE A 102 SHEET 6 B 6 TYR A 148 LYS A 152 1 O GLY A 150 N THR A 132 SHEET 1 C 3 LEU B 11 LEU B 16 0 SHEET 2 C 3 ILE B 175 LEU B 178 -1 O THR B 177 N LYS B 12 SHEET 3 C 3 VAL B 158 VAL B 159 -1 N VAL B 159 O GLY B 176 SHEET 1 D 6 GLU B 80 LYS B 89 0 SHEET 2 D 6 LEU B 65 GLY B 77 -1 N GLY B 77 O GLU B 80 SHEET 3 D 6 LEU B 41 ILE B 46 1 N CYS B 43 O SER B 66 SHEET 4 D 6 ASP B 99 LEU B 107 1 O ILE B 103 N VAL B 44 SHEET 5 D 6 SER B 127 ASP B 135 1 O SER B 127 N VAL B 100 SHEET 6 D 6 TYR B 148 LYS B 152 1 O GLY B 150 N THR B 132 LINK C GLU A 2 N MSE A 3 1555 1555 1.34 LINK C MSE A 3 N ASN A 4 1555 1555 1.34 LINK C VAL A 6 N MSE A 7 1555 1555 1.34 LINK C MSE A 7 N HIS A 8 1555 1555 1.31 LINK C ALA A 51 N MSE A 52 1555 1555 1.31 LINK C MSE A 52 N PHE A 53 1555 1555 1.32 LINK C PHE A 53 N MSE A 54 1555 1555 1.30 LINK C MSE A 54 N SER A 55 1555 1555 1.30 LINK C PHE A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N ASP A 71 1555 1555 1.33 LINK C VAL B 6 N MSE B 7 1555 1555 1.34 LINK C MSE B 7 N HIS B 8 1555 1555 1.34 LINK C ALA B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N PHE B 53 1555 1555 1.30 LINK C PHE B 53 N MSE B 54 1555 1555 1.32 LINK C MSE B 54 N SER B 55 1555 1555 1.33 LINK C PHE B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N ASP B 71 1555 1555 1.33 CISPEP 1 LEU A 47 LYS A 48 0 -3.64 CISPEP 2 LEU B 47 LYS B 48 0 -1.72 SITE 1 AC1 5 LEU A 47 LYS A 48 GLY A 49 ASP A 164 SITE 2 AC1 5 ARG A 170 SITE 1 AC2 4 SER A 74 TYR A 75 HIS A 76 HOH A 320 SITE 1 AC3 3 PRO A 137 ILE A 153 PRO A 154 SITE 1 AC4 4 ASN A 138 ARG A 139 PRO A 154 ASP A 155 SITE 1 AC5 5 LYS B 48 GLY B 49 ASP B 164 ARG B 170 SITE 2 AC5 5 HOH B 322 SITE 1 AC6 1 HIS B 76 SITE 1 AC7 3 LYS A 34 LEU B 41 SER B 66 SITE 1 AC8 3 ASN B 138 PRO B 154 ASP B 155 CRYST1 109.244 109.244 100.790 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009922 0.00000