HEADER TRANSCRIPTION REGULATOR 05-NOV-14 4RQW TITLE CRYSTAL STRUCTURE OF MYC3 N-TERMINAL JAZ-BINDING DOMAIN [44-238] FROM TITLE 2 ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR MYC3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MYC3 N-TERMINAL JAZ-BINDING DOMAIN (UNP RESIDUES 44-238); COMPND 5 SYNONYM: BASIC HELIX-LOOP-HELIX PROTEIN 5, ATBHLH5, BHLH 5, PROTEIN COMPND 6 ALTERED TRYPTOPHAN REGULATION 2, TRANSCRIPTION FACTOR ATR2, COMPND 7 TRANSCRIPTION FACTOR EN 36, BHLH TRANSCRIPTION FACTOR BHLH005; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G46760, ATR2, BHLH5, EN36, MYC3, MZA15.18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO KEYWDS HELIX-SHEET-HELIX FOLD, TRANSCRIPTION FACTOR, JAZ REPRESSORS, KEYWDS 2 NUCLEAR, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR J.KE,F.ZHANG,X.E.ZHOU,J.BRUNZELLE,M.ZHOU,H.E.XU,K.MELCHER,S.Y.HE REVDAT 4 30-OCT-24 4RQW 1 REMARK LINK REVDAT 3 16-SEP-15 4RQW 1 JRNL REVDAT 2 26-AUG-15 4RQW 1 JRNL REVDAT 1 12-AUG-15 4RQW 0 JRNL AUTH F.ZHANG,J.YAO,J.KE,L.ZHANG,V.Q.LAM,X.F.XIN,X.E.ZHOU,J.CHEN, JRNL AUTH 2 J.BRUNZELLE,P.R.GRIFFIN,M.ZHOU,H.E.XU,K.MELCHER,S.Y.HE JRNL TITL STRUCTURAL BASIS OF JAZ REPRESSION OF MYC TRANSCRIPTION JRNL TITL 2 FACTORS IN JASMONATE SIGNALLING. JRNL REF NATURE V. 525 269 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 26258305 JRNL DOI 10.1038/NATURE14661 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1371 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.839 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2592 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3501 ; 1.272 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.169 ;25.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;18.106 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1964 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 3.389 ; 6.052 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1624 ; 5.223 ; 9.026 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1283 ; 4.188 ; 6.328 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11017 ;10.473 ;56.646 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2 M NACL, 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.62700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.92850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.30950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.92850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.62700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.30950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 44 REMARK 465 PRO A 45 REMARK 465 GLN A 46 REMARK 465 PHE A 47 REMARK 465 ASN A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 102 REMARK 465 LYS A 103 REMARK 465 GLU A 104 REMARK 465 LYS A 105 REMARK 465 LYS A 106 REMARK 465 LYS A 107 REMARK 465 ASN A 108 REMARK 465 ASN A 109 REMARK 465 THR A 110 REMARK 465 GLY A 132 REMARK 465 ILE A 133 REMARK 465 GLY A 134 REMARK 465 VAL A 135 REMARK 465 SER A 136 REMARK 465 ASP A 137 REMARK 465 GLU A 138 REMARK 465 SER A 139 REMARK 465 ASN A 140 REMARK 465 PHE A 237 REMARK 465 ASN A 238 REMARK 465 GLN B 44 REMARK 465 PRO B 45 REMARK 465 GLN B 46 REMARK 465 PHE B 47 REMARK 465 ASN B 48 REMARK 465 GLU B 49 REMARK 465 HIS B 77 REMARK 465 ASP B 78 REMARK 465 PHE B 79 REMARK 465 ASP B 80 REMARK 465 SER B 81 REMARK 465 SER B 82 REMARK 465 THR B 83 REMARK 465 GLY B 84 REMARK 465 ASP B 85 REMARK 465 GLU B 101 REMARK 465 ASP B 102 REMARK 465 LYS B 103 REMARK 465 GLU B 104 REMARK 465 LYS B 105 REMARK 465 LYS B 106 REMARK 465 LYS B 107 REMARK 465 ASN B 108 REMARK 465 ASN B 109 REMARK 465 THR B 110 REMARK 465 GLY B 132 REMARK 465 ILE B 133 REMARK 465 GLY B 134 REMARK 465 VAL B 135 REMARK 465 SER B 136 REMARK 465 ASP B 137 REMARK 465 GLU B 138 REMARK 465 SER B 139 REMARK 465 ASN B 140 REMARK 465 ASP B 141 REMARK 465 ASN B 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 -134.07 48.08 REMARK 500 SER A 130 73.47 -114.17 REMARK 500 PHE A 235 -5.64 -142.18 REMARK 500 ASP B 226 37.69 -76.56 REMARK 500 LEU B 227 -72.07 -51.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 53 OE1 REMARK 620 2 ASP A 94 OD1 84.6 REMARK 620 3 GLU A 124 OE1 174.7 100.7 REMARK 620 4 HOH A 421 O 98.8 149.0 76.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 146 OD2 REMARK 620 2 ASP A 146 OD1 42.2 REMARK 620 3 GLU B 114 OE2 119.9 79.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RRU RELATED DB: PDB DBREF 4RQW A 44 238 UNP Q9FIP9 MYC3_ARATH 44 238 DBREF 4RQW B 44 238 UNP Q9FIP9 MYC3_ARATH 44 238 SEQRES 1 A 195 GLN PRO GLN PHE ASN GLU ASP THR LEU GLN GLN ARG LEU SEQRES 2 A 195 GLN ALA LEU ILE GLU SER ALA GLY GLU ASN TRP THR TYR SEQRES 3 A 195 ALA ILE PHE TRP GLN ILE SER HIS ASP PHE ASP SER SER SEQRES 4 A 195 THR GLY ASP ASN THR VAL ILE LEU GLY TRP GLY ASP GLY SEQRES 5 A 195 TYR TYR LYS GLY GLU GLU ASP LYS GLU LYS LYS LYS ASN SEQRES 6 A 195 ASN THR ASN THR ALA GLU GLN GLU HIS ARG LYS ARG VAL SEQRES 7 A 195 ILE ARG GLU LEU ASN SER LEU ILE SER GLY GLY ILE GLY SEQRES 8 A 195 VAL SER ASP GLU SER ASN ASP GLU GLU VAL THR ASP THR SEQRES 9 A 195 GLU TRP PHE PHE LEU VAL SER MSE THR GLN SER PHE VAL SEQRES 10 A 195 ASN GLY VAL GLY LEU PRO GLY GLU SER PHE LEU ASN SER SEQRES 11 A 195 ARG VAL ILE TRP LEU SER GLY SER GLY ALA LEU THR GLY SEQRES 12 A 195 SER GLY CYS GLU ARG ALA GLY GLN GLY GLN ILE TYR GLY SEQRES 13 A 195 LEU LYS THR MSE VAL CYS ILE ALA THR GLN ASN GLY VAL SEQRES 14 A 195 VAL GLU LEU GLY SER SER GLU VAL ILE SER GLN SER SER SEQRES 15 A 195 ASP LEU MSE HIS LYS VAL ASN ASN LEU PHE ASN PHE ASN SEQRES 1 B 195 GLN PRO GLN PHE ASN GLU ASP THR LEU GLN GLN ARG LEU SEQRES 2 B 195 GLN ALA LEU ILE GLU SER ALA GLY GLU ASN TRP THR TYR SEQRES 3 B 195 ALA ILE PHE TRP GLN ILE SER HIS ASP PHE ASP SER SER SEQRES 4 B 195 THR GLY ASP ASN THR VAL ILE LEU GLY TRP GLY ASP GLY SEQRES 5 B 195 TYR TYR LYS GLY GLU GLU ASP LYS GLU LYS LYS LYS ASN SEQRES 6 B 195 ASN THR ASN THR ALA GLU GLN GLU HIS ARG LYS ARG VAL SEQRES 7 B 195 ILE ARG GLU LEU ASN SER LEU ILE SER GLY GLY ILE GLY SEQRES 8 B 195 VAL SER ASP GLU SER ASN ASP GLU GLU VAL THR ASP THR SEQRES 9 B 195 GLU TRP PHE PHE LEU VAL SER MSE THR GLN SER PHE VAL SEQRES 10 B 195 ASN GLY VAL GLY LEU PRO GLY GLU SER PHE LEU ASN SER SEQRES 11 B 195 ARG VAL ILE TRP LEU SER GLY SER GLY ALA LEU THR GLY SEQRES 12 B 195 SER GLY CYS GLU ARG ALA GLY GLN GLY GLN ILE TYR GLY SEQRES 13 B 195 LEU LYS THR MSE VAL CYS ILE ALA THR GLN ASN GLY VAL SEQRES 14 B 195 VAL GLU LEU GLY SER SER GLU VAL ILE SER GLN SER SER SEQRES 15 B 195 ASP LEU MSE HIS LYS VAL ASN ASN LEU PHE ASN PHE ASN MODRES 4RQW MSE A 155 MET SELENOMETHIONINE MODRES 4RQW MSE A 203 MET SELENOMETHIONINE MODRES 4RQW MSE A 228 MET SELENOMETHIONINE MODRES 4RQW MSE B 155 MET SELENOMETHIONINE MODRES 4RQW MSE B 203 MET SELENOMETHIONINE MODRES 4RQW MSE B 228 MET SELENOMETHIONINE HET MSE A 155 8 HET MSE A 203 8 HET MSE A 228 8 HET MSE B 155 8 HET MSE B 203 8 HET MSE B 228 8 HET CA A 301 1 HET CA A 302 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *57(H2 O) HELIX 1 1 THR A 51 SER A 62 1 12 HELIX 2 2 THR A 112 SER A 130 1 19 HELIX 3 3 THR A 145 MSE A 155 1 11 HELIX 4 4 VAL A 163 ASN A 172 1 10 HELIX 5 5 GLY A 180 GLY A 188 1 9 HELIX 6 6 CYS A 189 TYR A 198 1 10 HELIX 7 7 ASP A 226 ASN A 236 1 11 HELIX 8 8 THR B 51 SER B 62 1 12 HELIX 9 9 THR B 112 SER B 130 1 19 HELIX 10 10 THR B 145 MSE B 155 1 11 HELIX 11 11 VAL B 163 ASN B 172 1 10 HELIX 12 12 GLY B 180 SER B 187 1 8 HELIX 13 13 CYS B 189 TYR B 198 1 10 HELIX 14 14 ASP B 226 ASN B 236 1 11 SHEET 1 A 6 SER A 158 VAL A 160 0 SHEET 2 A 6 ASP A 85 TYR A 97 -1 N LEU A 90 O PHE A 159 SHEET 3 A 6 TYR A 69 ASP A 80 -1 N GLN A 74 O GLY A 91 SHEET 4 A 6 GLY A 211 SER A 217 -1 O VAL A 212 N TRP A 73 SHEET 5 A 6 THR A 202 THR A 208 -1 N THR A 208 O GLY A 211 SHEET 6 A 6 VAL A 175 SER A 179 -1 N LEU A 178 O MSE A 203 SHEET 1 B 6 SER B 158 VAL B 160 0 SHEET 2 B 6 ILE B 89 TYR B 97 -1 N LEU B 90 O PHE B 159 SHEET 3 B 6 TYR B 69 SER B 76 -1 N GLN B 74 O GLY B 91 SHEET 4 B 6 GLY B 211 SER B 217 -1 O VAL B 212 N TRP B 73 SHEET 5 B 6 THR B 202 THR B 208 -1 N THR B 208 O GLY B 211 SHEET 6 B 6 VAL B 175 SER B 179 -1 N LEU B 178 O MSE B 203 LINK C SER A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N THR A 156 1555 1555 1.33 LINK C THR A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N VAL A 204 1555 1555 1.33 LINK C LEU A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N HIS A 229 1555 1555 1.33 LINK C SER B 154 N MSE B 155 1555 1555 1.33 LINK C MSE B 155 N THR B 156 1555 1555 1.32 LINK C THR B 202 N MSE B 203 1555 1555 1.34 LINK C MSE B 203 N VAL B 204 1555 1555 1.32 LINK C LEU B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N HIS B 229 1555 1555 1.33 LINK OE1 GLN A 53 CA CA A 301 1555 1555 2.29 LINK OD1 ASP A 94 CA CA A 301 1555 1555 2.44 LINK OE1 GLU A 124 CA CA A 301 1555 1555 2.51 LINK OD2 ASP A 146 CA CA A 302 1555 1555 2.91 LINK OD1 ASP A 146 CA CA A 302 1555 1555 3.15 LINK CA CA A 301 O HOH A 421 1555 1555 2.73 LINK CA CA A 302 OE2 GLU B 114 1555 1555 2.54 CISPEP 1 SER A 130 GLY A 131 0 0.15 CISPEP 2 ALA B 63 GLY B 64 0 -0.04 CISPEP 3 SER B 130 GLY B 131 0 -2.85 SITE 1 AC1 4 GLN A 53 ASP A 94 GLU A 124 HOH A 421 SITE 1 AC2 2 ASP A 146 GLU B 114 CRYST1 57.254 76.619 85.857 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011647 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.879841 -0.100293 0.464566 -4.42178 1 MTRIX2 2 -0.088854 -0.994958 -0.046516 97.68858 1 MTRIX3 2 0.466888 -0.000352 -0.884316 37.44390 1