HEADER LIGASE 06-NOV-14 4RR6 TITLE N-TERMINAL EDITING DOMAIN OF THREONYL-TRNA SYNTHETASE FROM AEROPYRUM TITLE 2 PERNIX WITH L-SER3AA (SNAPSHOT 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THREONINE--TRNA LIGASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-136; COMPND 5 SYNONYM: THREONYL-TRNA SYNTHETASE 2, THRRS 2; COMPND 6 EC: 6.1.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX K1; SOURCE 3 ORGANISM_TAXID: 272557; SOURCE 4 STRAIN: ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1; SOURCE 5 GENE: THRS2, APE_0117.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DTD-LIKE, PROOFREADING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AHMAD,S.MUTHUKUMAR,A.S.K.YERABHAM,V.KAMARTHAPU,R.SANKARANARAYANAN REVDAT 3 28-FEB-24 4RR6 1 REMARK REVDAT 2 22-NOV-17 4RR6 1 REMARK REVDAT 1 15-JUL-15 4RR6 0 JRNL AUTH S.AHMAD,S.MUTHUKUMAR,S.K.KUNCHA,S.B.ROUTH,A.S.YERABHAM, JRNL AUTH 2 T.HUSSAIN,V.KAMARTHAPU,S.P.KRUPARANI,R.SANKARANARAYANAN JRNL TITL SPECIFICITY AND CATALYSIS HARDWIRED AT THE RNA-PROTEIN JRNL TITL 2 INTERFACE IN A TRANSLATIONAL PROOFREADING ENZYME. JRNL REF NAT COMMUN V. 6 7552 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26113036 JRNL DOI 10.1038/NCOMMS8552 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1124 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1529 ; 1.621 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 135 ; 5.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;41.287 ;21.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 175 ;14.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 853 ; 0.009 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 688 ; 0.882 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1108 ; 1.632 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 436 ; 2.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 421 ; 4.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M MGCL2, 30% PEG4000, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.31950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.47800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.47800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.15975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.47800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.47800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.47925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.47800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.47800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.15975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.47800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.47800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.47925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.31950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 744 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 86 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 -113.13 -125.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3S A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RR7 RELATED DB: PDB REMARK 900 RELATED ID: 4RR8 RELATED DB: PDB REMARK 900 RELATED ID: 4RR9 RELATED DB: PDB REMARK 900 RELATED ID: 4RRA RELATED DB: PDB REMARK 900 RELATED ID: 4RRB RELATED DB: PDB REMARK 900 RELATED ID: 4RRC RELATED DB: PDB REMARK 900 RELATED ID: 4RRD RELATED DB: PDB REMARK 900 RELATED ID: 4RRF RELATED DB: PDB REMARK 900 RELATED ID: 4RRG RELATED DB: PDB REMARK 900 RELATED ID: 4RRH RELATED DB: PDB REMARK 900 RELATED ID: 4RRI RELATED DB: PDB REMARK 900 RELATED ID: 4RRJ RELATED DB: PDB REMARK 900 RELATED ID: 4RRK RELATED DB: PDB REMARK 900 RELATED ID: 4RRL RELATED DB: PDB REMARK 900 RELATED ID: 4RRM RELATED DB: PDB REMARK 900 RELATED ID: 4RRQ RELATED DB: PDB REMARK 900 RELATED ID: 4RRR RELATED DB: PDB DBREF 4RR6 A 1 136 UNP Q9YFY3 SYT2_AERPE 1 136 SEQRES 1 A 136 MET ARG LEU LEU TYR LEU HIS ALA ASP ARG PHE GLU TYR SEQRES 2 A 136 LYS THR VAL LYS PRO ALA LEU LYS ASN PRO PRO ASP PRO SEQRES 3 A 136 PRO GLY GLU ALA SER PHE GLY GLU ALA LEU VAL VAL PHE SEQRES 4 A 136 THR THR VAL GLU ASP GLY ASP GLY PRO GLN THR VAL MET SEQRES 5 A 136 TYR ALA ALA SER ASP ILE ALA SER HIS SER SER ARG LEU SEQRES 6 A 136 LYS VAL THR THR VAL ILE LEU TYR PRO TYR ALA HIS LEU SEQRES 7 A 136 SER SER ARG LEU ALA LYS PRO MET ALA ALA HIS LYS ARG SEQRES 8 A 136 LEU ILE GLU LEU GLU GLY ALA LEU ARG THR LYS PHE PRO SEQRES 9 A 136 GLY HIS VAL HIS ARG ALA PRO PHE GLY TRP TYR LYS SER SEQRES 10 A 136 PHE SER ILE ALA CYS LYS GLY HIS PRO LEU ALA GLU LEU SEQRES 11 A 136 SER ARG SER PHE THR GLU HET A3S A 500 25 HETNAM A3S SERINE-3'-AMINOADENOSINE HETSYN A3S N'-L-SERYL-3'-AMINO-(3'-DEOXY)-ADENOSINE FORMUL 2 A3S C13 H19 N7 O5 FORMUL 3 HOH *153(H2 O) HELIX 1 1 GLY A 47 LEU A 65 1 19 HELIX 2 2 LYS A 84 THR A 101 1 18 SHEET 1 A 3 GLU A 29 PHE A 32 0 SHEET 2 A 3 ARG A 2 PRO A 18 -1 N PHE A 11 O PHE A 32 SHEET 3 A 3 TRP A 114 CYS A 122 -1 O ALA A 121 N ASP A 9 SHEET 1 B 5 HIS A 106 ARG A 109 0 SHEET 2 B 5 THR A 69 PRO A 74 1 N VAL A 70 O HIS A 108 SHEET 3 B 5 ALA A 35 THR A 41 1 N VAL A 38 O ILE A 71 SHEET 4 B 5 ARG A 2 PRO A 18 -1 N LEU A 6 O VAL A 37 SHEET 5 B 5 GLU A 129 SER A 133 -1 O LEU A 130 N TYR A 5 SITE 1 AC1 21 ALA A 19 THR A 40 VAL A 42 PRO A 74 SITE 2 AC1 21 TYR A 75 ALA A 76 HIS A 77 LEU A 82 SITE 3 AC1 21 ALA A 83 PHE A 112 GLY A 113 TRP A 114 SITE 4 AC1 21 TYR A 115 LYS A 116 GLU A 129 HOH A 601 SITE 5 AC1 21 HOH A 603 HOH A 616 HOH A 630 HOH A 631 SITE 6 AC1 21 HOH A 673 CRYST1 46.956 46.956 112.639 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008878 0.00000 TER 1069 GLU A 136 HETATM 1070 O5' A3S A 500 15.309 -2.473 -5.832 1.00 23.59 O HETATM 1071 C5' A3S A 500 14.951 -3.842 -6.055 1.00 22.10 C HETATM 1072 C4' A3S A 500 14.770 -4.529 -4.739 1.00 20.87 C HETATM 1073 O4' A3S A 500 16.029 -4.460 -4.016 1.00 22.14 O HETATM 1074 C1' A3S A 500 15.731 -3.927 -2.691 1.00 19.29 C HETATM 1075 N9 A3S A 500 16.516 -2.630 -2.522 1.00 19.82 N HETATM 1076 C4 A3S A 500 16.374 -1.793 -1.492 1.00 20.70 C HETATM 1077 N3 A3S A 500 15.547 -1.814 -0.437 1.00 20.75 N HETATM 1078 C2 A3S A 500 15.634 -0.838 0.474 1.00 20.28 C HETATM 1079 N1 A3S A 500 16.537 0.120 0.350 1.00 19.99 N HETATM 1080 C6 A3S A 500 17.392 0.208 -0.690 1.00 19.93 C HETATM 1081 N6 A3S A 500 18.280 1.209 -0.787 1.00 21.54 N HETATM 1082 C5 A3S A 500 17.315 -0.793 -1.649 1.00 21.16 C HETATM 1083 N7 A3S A 500 17.969 -1.029 -2.794 1.00 20.99 N HETATM 1084 C8 A3S A 500 17.502 -2.169 -3.327 1.00 20.40 C HETATM 1085 C2' A3S A 500 14.221 -4.000 -2.501 1.00 20.08 C HETATM 1086 O2' A3S A 500 13.833 -5.299 -2.072 1.00 22.66 O HETATM 1087 C3' A3S A 500 13.759 -3.732 -3.927 1.00 21.34 C HETATM 1088 N8 A3S A 500 12.430 -4.255 -4.093 1.00 21.78 N HETATM 1089 N A3S A 500 9.094 -3.960 -2.950 1.00 23.21 N HETATM 1090 CA A3S A 500 10.042 -4.195 -4.081 1.00 23.37 C HETATM 1091 CB A3S A 500 9.397 -3.748 -5.418 1.00 24.27 C HETATM 1092 OG A3S A 500 8.333 -4.681 -5.763 1.00 26.19 O HETATM 1093 C A3S A 500 11.376 -3.509 -3.896 1.00 22.56 C HETATM 1094 O A3S A 500 11.466 -2.184 -3.612 1.00 22.85 O HETATM 1095 O HOH A 601 6.540 -4.539 -2.967 1.00 25.19 O HETATM 1096 O HOH A 602 2.341 -12.183 13.790 1.00 26.25 O HETATM 1097 O HOH A 603 11.312 -5.783 -1.328 1.00 29.26 O HETATM 1098 O HOH A 604 12.575 -8.297 -2.327 1.00 27.13 O HETATM 1099 O HOH A 605 30.232 3.195 -6.684 1.00 31.51 O HETATM 1100 O HOH A 606 12.473 -12.192 9.883 1.00 30.24 O HETATM 1101 O HOH A 607 14.905 6.513 18.048 1.00 25.55 O HETATM 1102 O HOH A 608 11.101 -13.768 12.366 1.00 23.45 O HETATM 1103 O HOH A 609 8.315 -9.626 -11.171 1.00 28.21 O HETATM 1104 O HOH A 610 1.472 3.804 11.519 1.00 24.64 O HETATM 1105 O HOH A 611 -2.167 8.963 9.084 1.00 27.24 O HETATM 1106 O HOH A 612 14.450 5.413 -5.183 1.00 26.59 O HETATM 1107 O HOH A 613 17.669 -11.191 14.039 1.00 29.05 O HETATM 1108 O HOH A 614 6.345 6.652 19.036 1.00 31.32 O HETATM 1109 O HOH A 615 -0.117 -11.726 12.506 1.00 32.34 O HETATM 1110 O HOH A 616 20.250 0.175 -3.992 1.00 32.74 O HETATM 1111 O HOH A 617 13.072 10.632 13.197 1.00 23.28 O HETATM 1112 O HOH A 618 10.050 -15.347 -6.357 1.00 28.68 O HETATM 1113 O HOH A 619 0.537 -9.806 16.597 1.00 28.65 O HETATM 1114 O HOH A 620 24.499 2.098 4.485 1.00 31.22 O HETATM 1115 O HOH A 621 28.291 7.956 -2.244 1.00 38.46 O HETATM 1116 O HOH A 622 12.900 -11.457 18.825 1.00 24.77 O HETATM 1117 O HOH A 623 3.418 -21.009 -2.312 1.00 27.61 O HETATM 1118 O HOH A 624 18.948 14.787 5.942 1.00 27.40 O HETATM 1119 O HOH A 625 15.347 12.187 -1.452 1.00 35.26 O HETATM 1120 O HOH A 626 -5.066 -9.792 13.756 1.00 38.32 O HETATM 1121 O HOH A 627 11.149 -9.421 19.007 1.00 29.28 O HETATM 1122 O HOH A 628 30.597 1.194 -2.196 1.00 35.72 O HETATM 1123 O HOH A 629 -3.841 -10.227 3.261 1.00 46.87 O HETATM 1124 O HOH A 630 17.908 -1.731 -7.169 1.00 35.66 O HETATM 1125 O HOH A 631 11.226 -2.267 -7.354 1.00 32.25 O HETATM 1126 O HOH A 632 18.955 -8.985 18.328 1.00 41.82 O HETATM 1127 O HOH A 633 7.526 -2.195 21.548 1.00 31.16 O HETATM 1128 O HOH A 634 21.644 8.551 6.273 1.00 30.60 O HETATM 1129 O HOH A 635 21.786 9.989 2.717 1.00 37.52 O HETATM 1130 O HOH A 636 25.777 2.932 -0.495 1.00 30.22 O HETATM 1131 O HOH A 637 19.649 -9.625 11.952 1.00 41.26 O HETATM 1132 O HOH A 638 26.117 -5.936 10.005 1.00 40.42 O HETATM 1133 O HOH A 639 -4.868 5.009 7.044 1.00 19.08 O HETATM 1134 O HOH A 640 8.210 8.415 2.697 1.00 28.38 O HETATM 1135 O HOH A 641 27.611 3.205 6.690 1.00 41.25 O HETATM 1136 O HOH A 642 20.171 9.966 4.699 1.00 32.96 O HETATM 1137 O HOH A 643 23.256 -8.915 -7.698 1.00 45.22 O HETATM 1138 O HOH A 644 21.896 -6.283 -9.505 1.00 45.08 O HETATM 1139 O HOH A 645 -0.457 -6.480 16.248 1.00 37.85 O HETATM 1140 O HOH A 646 26.219 9.258 7.822 1.00 36.34 O HETATM 1141 O HOH A 647 27.952 -2.001 10.594 1.00 43.95 O HETATM 1142 O HOH A 648 11.928 -0.507 23.716 1.00 43.15 O HETATM 1143 O HOH A 649 2.161 -12.703 -7.325 1.00 38.61 O HETATM 1144 O HOH A 650 5.589 -18.134 -2.796 1.00 44.53 O HETATM 1145 O HOH A 651 -3.543 -2.080 18.201 1.00 46.92 O HETATM 1146 O HOH A 652 28.340 -1.127 4.551 1.00 49.62 O HETATM 1147 O HOH A 653 0.663 -10.668 -3.256 1.00 36.75 O HETATM 1148 O HOH A 654 11.967 2.119 22.201 1.00 42.42 O HETATM 1149 O HOH A 655 -3.083 -11.737 5.747 1.00 45.73 O HETATM 1150 O HOH A 656 -1.191 -9.789 14.578 1.00 35.97 O HETATM 1151 O HOH A 657 -3.349 -14.886 7.421 1.00 50.80 O HETATM 1152 O HOH A 658 0.346 0.644 25.215 1.00 44.67 O HETATM 1153 O HOH A 659 27.657 12.811 10.289 1.00 64.89 O HETATM 1154 O HOH A 660 6.572 -10.542 -13.447 1.00 25.78 O HETATM 1155 O HOH A 661 8.984 -14.220 10.693 1.00 22.12 O HETATM 1156 O HOH A 662 6.732 -17.328 -4.831 1.00 42.65 O HETATM 1157 O HOH A 663 11.314 4.435 -7.591 1.00 28.35 O HETATM 1158 O HOH A 664 17.563 -9.968 20.489 1.00 34.63 O HETATM 1159 O HOH A 665 16.654 6.723 20.558 1.00 29.59 O HETATM 1160 O HOH A 666 12.182 6.967 19.858 1.00 44.70 O HETATM 1161 O HOH A 667 0.234 -13.001 -1.512 1.00 57.53 O HETATM 1162 O HOH A 668 9.428 -14.703 2.853 1.00 32.78 O HETATM 1163 O HOH A 669 22.042 -4.878 15.070 1.00 36.26 O HETATM 1164 O HOH A 670 -6.633 -5.458 13.951 1.00 43.14 O HETATM 1165 O HOH A 671 13.114 -14.467 8.120 1.00 49.85 O HETATM 1166 O HOH A 672 20.885 12.714 5.867 1.00 50.25 O HETATM 1167 O HOH A 673 13.934 -1.610 -8.224 1.00 34.39 O HETATM 1168 O HOH A 674 5.736 -3.243 22.864 1.00 38.92 O HETATM 1169 O HOH A 675 13.822 12.093 4.459 1.00 42.39 O HETATM 1170 O HOH A 676 21.975 5.234 17.758 1.00 38.62 O HETATM 1171 O HOH A 677 3.388 7.320 17.156 1.00 41.78 O HETATM 1172 O HOH A 678 20.531 1.227 -6.187 1.00 39.20 O HETATM 1173 O HOH A 679 -5.562 -4.704 18.632 1.00 47.34 O HETATM 1174 O HOH A 680 15.521 10.366 5.080 1.00 41.28 O HETATM 1175 O HOH A 681 11.904 -13.401 5.344 1.00 46.25 O HETATM 1176 O HOH A 682 24.030 -12.112 -3.527 1.00 52.60 O HETATM 1177 O HOH A 683 8.402 12.722 7.135 1.00 32.79 O HETATM 1178 O HOH A 684 -0.918 12.289 12.417 1.00 42.93 O HETATM 1179 O HOH A 685 -6.835 -7.929 11.504 1.00 53.82 O HETATM 1180 O HOH A 686 11.647 -17.686 -7.162 1.00 33.86 O HETATM 1181 O HOH A 687 2.000 -2.244 24.011 1.00 47.26 O HETATM 1182 O HOH A 688 27.900 4.268 -8.162 1.00 47.62 O HETATM 1183 O HOH A 689 27.223 -1.336 -1.000 1.00 43.45 O HETATM 1184 O HOH A 690 13.561 -15.558 2.036 1.00 55.79 O HETATM 1185 O HOH A 691 24.377 -6.988 8.597 1.00 51.14 O HETATM 1186 O HOH A 692 25.852 -10.627 -8.188 1.00 53.41 O HETATM 1187 O HOH A 693 -1.100 11.820 19.655 1.00 45.16 O HETATM 1188 O HOH A 694 9.595 1.518 23.108 1.00 43.84 O HETATM 1189 O HOH A 695 2.846 -11.015 -9.610 1.00 38.82 O HETATM 1190 O HOH A 696 13.278 -9.689 -13.305 1.00 45.27 O HETATM 1191 O HOH A 697 5.643 4.492 23.246 1.00 46.57 O HETATM 1192 O HOH A 698 0.230 -11.055 20.821 1.00 45.42 O HETATM 1193 O HOH A 699 28.755 14.086 7.604 1.00 48.02 O HETATM 1194 O HOH A 700 28.019 5.659 6.982 1.00 50.85 O HETATM 1195 O HOH A 701 26.455 10.606 14.780 1.00 44.38 O HETATM 1196 O HOH A 702 20.089 -16.273 -2.510 1.00 63.61 O HETATM 1197 O HOH A 703 12.576 -20.319 -0.696 1.00 47.05 O HETATM 1198 O HOH A 704 -5.564 -2.371 19.804 1.00 70.94 O HETATM 1199 O HOH A 705 15.121 -13.622 9.503 1.00 57.73 O HETATM 1200 O HOH A 706 -0.901 -16.284 8.036 1.00 60.87 O HETATM 1201 O HOH A 707 8.852 -1.715 23.590 1.00 49.66 O HETATM 1202 O HOH A 708 3.667 -4.288 21.576 1.00 47.41 O HETATM 1203 O HOH A 709 19.323 -1.156 -9.073 1.00 64.53 O HETATM 1204 O HOH A 710 17.160 0.755 -7.662 1.00 54.29 O HETATM 1205 O HOH A 711 14.774 -13.733 3.779 1.00 32.64 O HETATM 1206 O HOH A 712 7.499 -9.293 -16.128 1.00 36.67 O HETATM 1207 O HOH A 713 8.698 -18.836 -3.496 1.00 45.92 O HETATM 1208 O HOH A 714 25.439 -8.869 6.834 1.00 53.30 O HETATM 1209 O HOH A 715 27.339 4.404 12.994 1.00 46.37 O HETATM 1210 O HOH A 716 14.860 1.689 -8.589 1.00 56.87 O HETATM 1211 O HOH A 717 1.147 12.718 11.060 1.00 47.60 O HETATM 1212 O HOH A 718 14.968 11.170 2.168 1.00 57.68 O HETATM 1213 O HOH A 719 0.642 -9.649 -9.802 1.00 45.09 O HETATM 1214 O HOH A 720 28.746 11.109 -2.263 1.00 51.43 O HETATM 1215 O HOH A 721 29.294 -1.096 6.776 1.00 57.75 O HETATM 1216 O HOH A 722 20.996 -1.741 -10.909 1.00 64.52 O HETATM 1217 O HOH A 723 13.806 -0.414 25.295 1.00 48.89 O HETATM 1218 O HOH A 724 -3.144 -5.112 19.170 1.00 63.21 O HETATM 1219 O HOH A 725 1.752 -14.057 0.257 1.00 48.03 O HETATM 1220 O HOH A 726 -5.700 -12.132 -0.461 1.00 62.32 O HETATM 1221 O HOH A 727 -9.372 -5.988 2.370 1.00 54.92 O HETATM 1222 O HOH A 728 21.919 -14.179 -12.775 1.00 57.42 O HETATM 1223 O HOH A 729 25.509 -6.851 2.308 1.00 47.85 O HETATM 1224 O HOH A 730 24.091 -8.148 11.330 1.00 54.75 O HETATM 1225 O HOH A 731 -7.641 -3.752 20.749 1.00 51.80 O HETATM 1226 O HOH A 732 4.330 6.710 24.181 1.00 47.35 O HETATM 1227 O HOH A 733 -8.373 -5.403 18.909 1.00 58.77 O HETATM 1228 O HOH A 734 -4.845 6.596 17.044 1.00 46.08 O HETATM 1229 O HOH A 735 24.283 -8.335 4.556 1.00 50.18 O HETATM 1230 O HOH A 736 -1.541 -0.789 25.325 1.00 52.41 O HETATM 1231 O HOH A 737 24.779 4.959 17.710 1.00 57.30 O HETATM 1232 O HOH A 738 20.325 -0.471 -13.551 1.00 55.81 O HETATM 1233 O HOH A 739 8.376 3.481 24.850 1.00 51.43 O HETATM 1234 O HOH A 740 17.177 -14.512 4.907 1.00 54.27 O HETATM 1235 O HOH A 741 20.624 -17.417 -0.222 1.00 56.43 O HETATM 1236 O HOH A 742 18.007 -3.686 -9.805 1.00 51.23 O HETATM 1237 O HOH A 743 -6.302 -0.610 16.026 1.00 59.38 O HETATM 1238 O HOH A 744 11.674 11.674 0.000 0.50 43.18 O HETATM 1239 O HOH A 745 -8.610 2.000 12.799 1.00 24.40 O HETATM 1240 O HOH A 746 11.871 -15.148 -13.166 1.00 45.00 O HETATM 1241 O HOH A 747 7.009 -13.865 -13.818 1.00 50.81 O HETATM 1242 O HOH A 748 23.973 -7.989 -1.807 1.00 39.44 O HETATM 1243 O HOH A 749 18.096 -7.176 -12.856 1.00 53.60 O HETATM 1244 O HOH A 750 8.848 8.844 0.003 0.50 23.59 O HETATM 1245 O HOH A 751 26.166 -3.100 -4.046 1.00 28.95 O HETATM 1246 O HOH A 752 -9.419 -5.987 7.067 1.00 50.68 O HETATM 1247 O HOH A 753 -2.926 6.305 19.847 1.00 45.59 O CONECT 1070 1071 CONECT 1071 1070 1072 CONECT 1072 1071 1073 1087 CONECT 1073 1072 1074 CONECT 1074 1073 1075 1085 CONECT 1075 1074 1076 1084 CONECT 1076 1075 1077 1082 CONECT 1077 1076 1078 CONECT 1078 1077 1079 CONECT 1079 1078 1080 CONECT 1080 1079 1081 1082 CONECT 1081 1080 CONECT 1082 1076 1080 1083 CONECT 1083 1082 1084 CONECT 1084 1075 1083 CONECT 1085 1074 1086 1087 CONECT 1086 1085 CONECT 1087 1072 1085 1088 CONECT 1088 1087 1093 CONECT 1089 1090 CONECT 1090 1089 1091 1093 CONECT 1091 1090 1092 CONECT 1092 1091 CONECT 1093 1088 1090 1094 CONECT 1094 1093 MASTER 336 0 1 2 8 0 6 6 1246 1 25 11 END