HEADER DNA BINDING PROTEIN/DNA 07-NOV-14 4RSB OBSLTE 01-JUN-16 4RSB 5K5Q TITLE STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDING PROTEIN- TITLE 2 CENTROMERE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPA; COMPND 3 CHAIN: C, D, A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (32-MER); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (32-MER); COMPND 11 CHAIN: N; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SP. NOB8H2; SOURCE 3 ORGANISM_TAXID: 84600; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PADR FAMILY, DNA SEGREGATION/CENTROMERE BINDING, PARB, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,J.LEE,N.B.CHINNAM,D.BARILLA REVDAT 2 01-JUN-16 4RSB 1 OBSLTE REVDAT 1 16-SEP-15 4RSB 0 JRNL AUTH M.A.SCHUMACHER,N.K.TONTHAT,J.LEE,F.A.RODRIGUEZ-CASTANEDA, JRNL AUTH 2 N.B.CHINNAM,A.K.KALLIOMAA-SANFORD,I.W.NG,M.T.BARGE,P.L.SHAW, JRNL AUTH 3 D.BARILLA JRNL TITL STRUCTURES OF ARCHAEAL DNA SEGREGATION MACHINERY REVEAL JRNL TITL 2 BACTERIAL AND EUKARYOTIC LINKAGES. JRNL REF SCIENCE V. 349 1120 2015 JRNL REFN ISSN 0036-8075 JRNL PMID 26339031 JRNL DOI 10.1126/SCIENCE.AAA9046 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 22197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4430 REMARK 3 NUCLEIC ACID ATOMS : 1306 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.45700 REMARK 3 B22 (A**2) : -2.07100 REMARK 3 B33 (A**2) : -19.38600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 36.63200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.191 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.971 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.296 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.229 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-14. REMARK 100 THE RCSB ID CODE IS RCSB087735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.018 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4RS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG200, PHOSPHATE/CITRATE, SODIUM REMARK 280 CHLORIDE, PH 4.2, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.32500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.32500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASPA DIMERS BIND TO DNA AND FORM A SUPERHELIX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, P, N, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, P, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, N, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN C 93 REMARK 465 VAL D 92 REMARK 465 GLN D 93 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 GLN E 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 35 O HOH A 203 1.90 REMARK 500 CB VAL C 89 NH1 ARG D 86 1.94 REMARK 500 CG1 VAL C 89 NH1 ARG D 86 1.99 REMARK 500 N1 DA N 15 O4 DT N 16 2.12 REMARK 500 O4 DT P 10 N6 DA N 41 2.15 REMARK 500 CG2 VAL C 89 NH1 ARG D 86 2.19 REMARK 500 N1 DA P 35 O4 DT N 16 2.19 REMARK 500 C7 DT N 16 N6 DA N 17 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 201 O HOH B 202 4545 1.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL C 89 CA VAL C 89 CB -0.265 REMARK 500 VAL C 89 CB VAL C 89 CG1 0.365 REMARK 500 VAL C 89 CB VAL C 89 CG2 0.293 REMARK 500 ARG D 86 CZ ARG D 86 NH2 0.084 REMARK 500 DA N 17 O3' DT N 18 P -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL C 89 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 VAL C 89 CG1 - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 VAL C 89 CA - CB - CG1 ANGL. DEV. = -20.0 DEGREES REMARK 500 ARG D 86 NH1 - CZ - NH2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG D 86 NE - CZ - NH1 ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG D 86 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT P 38 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DA N 14 C5' - C4' - O4' ANGL. DEV. = 8.1 DEGREES REMARK 500 DA N 14 C2' - C3' - O3' ANGL. DEV. = -17.3 DEGREES REMARK 500 DA N 15 O5' - P - OP2 ANGL. DEV. = 13.1 DEGREES REMARK 500 DA N 15 C5' - C4' - C3' ANGL. DEV. = -13.3 DEGREES REMARK 500 DA N 15 O3' - P - OP2 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA N 15 O3' - P - OP1 ANGL. DEV. = -33.0 DEGREES REMARK 500 DT N 16 O5' - P - OP1 ANGL. DEV. = 8.3 DEGREES REMARK 500 DT N 16 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DT N 16 O3' - P - OP1 ANGL. DEV. = -22.1 DEGREES REMARK 500 DT N 18 O4' - C4' - C3' ANGL. DEV. = 3.9 DEGREES REMARK 500 DT N 18 C5' - C4' - C3' ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 5 65.32 178.28 REMARK 500 LYS C 8 -50.07 -130.21 REMARK 500 TYR C 9 53.89 -114.46 REMARK 500 PHE C 11 -42.88 -131.42 REMARK 500 LYS C 24 -78.65 -67.14 REMARK 500 LYS C 62 61.67 -111.20 REMARK 500 ILE C 85 -70.20 -77.96 REMARK 500 ILE D 4 -75.84 -116.20 REMARK 500 THR D 6 -155.33 -111.05 REMARK 500 GLU D 35 -86.69 -53.15 REMARK 500 TYR D 41 -70.96 -46.79 REMARK 500 GLN D 42 -27.32 -39.90 REMARK 500 ALA D 78 -70.65 -61.73 REMARK 500 ILE D 85 -71.08 -73.47 REMARK 500 ARG D 86 -36.33 -39.09 REMARK 500 GLU D 90 -29.69 -34.14 REMARK 500 THR A 6 94.12 -67.09 REMARK 500 TYR A 9 71.05 -108.77 REMARK 500 ILE A 10 -80.78 -77.19 REMARK 500 ILE A 19 -75.93 -62.84 REMARK 500 LEU A 22 1.40 -58.60 REMARK 500 ILE B 4 -63.02 -94.17 REMARK 500 TYR B 9 79.51 -112.50 REMARK 500 PHE B 11 -62.28 -99.07 REMARK 500 GLU B 60 87.65 -177.08 REMARK 500 ALA B 78 -83.12 -56.74 REMARK 500 THR B 79 -35.76 -38.96 REMARK 500 VAL B 92 -80.09 -40.50 REMARK 500 SER E 5 47.28 -175.37 REMARK 500 LYS E 8 -78.62 -110.88 REMARK 500 LYS F 3 94.19 -64.13 REMARK 500 PHE F 11 -65.06 -97.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT P 14 0.08 SIDE CHAIN REMARK 500 DG P 26 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RS7 RELATED DB: PDB REMARK 900 RELATED ID: 4RS8 RELATED DB: PDB REMARK 900 RELATED ID: 4RSF RELATED DB: PDB DBREF 4RSB C 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB D 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB A 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB B 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB E 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB F 2 93 UNP O93706 O93706_9CREN 2 93 DBREF 4RSB P 7 38 PDB 4RSB 4RSB 7 38 DBREF 4RSB N 13 44 PDB 4RSB 4RSB 13 44 SEQRES 1 C 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 C 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 C 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 C 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 C 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 C 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 C 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 C 92 GLN SEQRES 1 D 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 D 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 D 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 D 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 D 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 D 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 D 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 D 92 GLN SEQRES 1 A 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 A 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 A 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 A 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 A 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 A 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 A 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 A 92 GLN SEQRES 1 B 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 B 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 B 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 B 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 B 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 B 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 B 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 B 92 GLN SEQRES 1 P 32 DA DA DA DT DT DG DC DT DC DT DA DT DG SEQRES 2 P 32 DT DT DA DA DT DC DG DC DA DG DA DG DC SEQRES 3 P 32 DA DT DA DT DT DT SEQRES 1 N 32 DA DA DA DT DA DT DG DC DT DC DT DA DT SEQRES 2 N 32 DG DA DT DT DA DA DC DA DT DA DG DA DG SEQRES 3 N 32 DC DA DA DT DT DT SEQRES 1 E 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 E 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 E 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 E 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 E 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 E 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 E 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 E 92 GLN SEQRES 1 F 92 GLY LYS ILE SER THR ASP LYS TYR ILE PHE LEU THR PRO SEQRES 2 F 92 ARG ALA TYR ILE ILE VAL HIS LEU LEU LYS VAL GLY LYS SEQRES 3 F 92 ALA LYS ALA SER GLU ILE SER GLU ASN THR GLN ILE PRO SEQRES 4 F 92 TYR GLN THR VAL ILE GLN ASN ILE ARG TRP LEU LEU ALA SEQRES 5 F 92 GLU GLY TYR VAL VAL LYS GLU GLN LYS GLY GLU GLU ILE SEQRES 6 F 92 TYR TYR LYS LEU THR ASP LYS GLY LYS GLN LEU ALA THR SEQRES 7 F 92 ALA GLU LEU GLU LYS ILE ARG LYS LEU VAL GLU VAL VAL SEQRES 8 F 92 GLN HET PO4 A 101 5 HET PO4 B 101 5 HETNAM PO4 PHOSPHATE ION FORMUL 9 PO4 2(O4 P 3-) FORMUL 11 HOH *5(H2 O) HELIX 1 1 THR C 13 GLY C 26 1 14 HELIX 2 2 LYS C 29 THR C 37 1 9 HELIX 3 3 PRO C 40 GLY C 55 1 16 HELIX 4 4 THR C 71 VAL C 92 1 22 HELIX 5 5 THR D 13 GLY D 26 1 14 HELIX 6 6 LYS D 29 GLN D 38 1 10 HELIX 7 7 PRO D 40 GLU D 54 1 15 HELIX 8 8 THR D 71 GLU D 90 1 20 HELIX 9 9 THR A 13 VAL A 25 1 13 HELIX 10 10 LYS A 29 THR A 37 1 9 HELIX 11 11 PRO A 40 GLU A 54 1 15 HELIX 12 12 THR A 71 VAL A 91 1 21 HELIX 13 13 THR B 13 GLY B 26 1 14 HELIX 14 14 LYS B 29 GLN B 38 1 10 HELIX 15 15 PRO B 40 GLU B 54 1 15 HELIX 16 16 THR B 71 GLN B 93 1 23 HELIX 17 17 THR E 13 GLY E 26 1 14 HELIX 18 18 LYS E 29 THR E 37 1 9 HELIX 19 19 PRO E 40 GLU E 54 1 15 HELIX 20 20 THR E 71 VAL E 91 1 21 HELIX 21 21 THR F 13 VAL F 25 1 13 HELIX 22 22 LYS F 29 GLN F 38 1 10 HELIX 23 23 PRO F 40 GLU F 54 1 15 HELIX 24 24 THR F 71 GLN F 93 1 23 SHEET 1 A 3 LYS C 27 ALA C 28 0 SHEET 2 A 3 ILE C 66 LEU C 70 -1 O TYR C 68 N ALA C 28 SHEET 3 A 3 VAL C 57 GLN C 61 -1 N VAL C 58 O LYS C 69 SHEET 1 B 2 VAL D 57 LYS D 62 0 SHEET 2 B 2 GLU D 65 LEU D 70 -1 O LYS D 69 N VAL D 58 SHEET 1 C 3 LYS A 27 ALA A 28 0 SHEET 2 C 3 GLU A 65 LEU A 70 -1 O TYR A 68 N ALA A 28 SHEET 3 C 3 VAL A 57 LYS A 62 -1 N GLU A 60 O TYR A 67 SHEET 1 D 3 LYS B 27 ALA B 28 0 SHEET 2 D 3 TYR B 68 LEU B 70 -1 O TYR B 68 N ALA B 28 SHEET 3 D 3 VAL B 57 VAL B 58 -1 N VAL B 58 O LYS B 69 SHEET 1 E 2 GLN B 61 LYS B 62 0 SHEET 2 E 2 GLU B 65 ILE B 66 -1 O GLU B 65 N LYS B 62 SHEET 1 F 2 VAL E 57 LYS E 62 0 SHEET 2 F 2 GLU E 65 LEU E 70 -1 O GLU E 65 N LYS E 62 SHEET 1 G 3 LYS F 27 ALA F 28 0 SHEET 2 G 3 TYR F 68 LEU F 70 -1 O TYR F 68 N ALA F 28 SHEET 3 G 3 VAL F 57 LYS F 59 -1 N VAL F 58 O LYS F 69 SITE 1 AC1 3 LYS A 8 THR A 37 GLN A 38 SITE 1 AC2 4 LYS B 8 TYR B 17 THR B 37 GLN B 38 CRYST1 154.650 56.920 103.800 90.00 112.30 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006466 0.000000 0.002652 0.00000 SCALE2 0.000000 0.017569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010413 0.00000