HEADER PROTEIN BINDING 14-NOV-14 4RTA TITLE CYSTAL STRUCTURE OF THE DPY30 FOR MLL/SET1 COMPASS H3K4 TRIMETHYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DPY-30 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DPY-30-LIKE PROTEIN, DPY-30L; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPY30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ROSSMANN FOLD, H3K4 METHYLATION, ASH2L, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.M.ZHANG,M.LI,W.R.CHANG REVDAT 2 08-NOV-23 4RTA 1 REMARK SEQADV REVDAT 1 07-OCT-15 4RTA 0 JRNL AUTH H.ZHANG,M.LI,Y.GAO,C.JIA,X.PAN,P.CAO,X.ZHAO,J.ZHANG,W.CHANG JRNL TITL STRUCTURAL IMPLICATIONS OF DPY30 OLIGOMERIZATION FOR JRNL TITL 2 MLL/SET1 COMPASS H3K4 TRIMETHYLATION. JRNL REF PROTEIN CELL V. 6 147 2015 JRNL REFN ISSN 1674-800X JRNL PMID 25542209 JRNL DOI 10.1007/S13238-014-0127-Z REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2162 - 3.3679 0.98 3118 155 0.1883 0.2129 REMARK 3 2 3.3679 - 2.6739 1.00 2993 166 0.2231 0.2498 REMARK 3 3 2.6739 - 2.3361 1.00 2977 151 0.2300 0.2865 REMARK 3 4 2.3361 - 2.1226 0.99 2918 146 0.2457 0.2567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1123 REMARK 3 ANGLE : 1.027 1523 REMARK 3 CHIRALITY : 0.042 177 REMARK 3 PLANARITY : 0.005 201 REMARK 3 DIHEDRAL : 17.046 450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 45 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7783 26.4956 -15.1215 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.6573 REMARK 3 T33: 0.4486 T12: -0.0178 REMARK 3 T13: -0.0404 T23: -0.1100 REMARK 3 L TENSOR REMARK 3 L11: 2.0290 L22: 2.0198 REMARK 3 L33: 7.9079 L12: 2.5516 REMARK 3 L13: 0.9704 L23: 0.7562 REMARK 3 S TENSOR REMARK 3 S11: -0.7303 S12: 1.5422 S13: -0.6415 REMARK 3 S21: -0.4812 S22: 0.5893 S23: -0.2779 REMARK 3 S31: 0.1797 S32: 0.8013 S33: 0.0219 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 53 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6922 29.9700 -5.6742 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.3157 REMARK 3 T33: 0.3303 T12: 0.0504 REMARK 3 T13: -0.0072 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.0382 L22: 4.7903 REMARK 3 L33: 9.3883 L12: 5.5457 REMARK 3 L13: 3.5739 L23: -3.6451 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: 0.1623 S13: -0.3431 REMARK 3 S21: -0.0538 S22: -0.0218 S23: 0.3467 REMARK 3 S31: -0.3110 S32: -0.0838 S33: 0.2104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 62 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8061 25.8760 8.8814 REMARK 3 T TENSOR REMARK 3 T11: 0.3757 T22: 0.2276 REMARK 3 T33: 0.3529 T12: 0.0105 REMARK 3 T13: -0.0371 T23: 0.0762 REMARK 3 L TENSOR REMARK 3 L11: 6.8913 L22: 6.1358 REMARK 3 L33: 8.3571 L12: 1.8510 REMARK 3 L13: 1.4098 L23: 3.6906 REMARK 3 S TENSOR REMARK 3 S11: 0.2508 S12: -0.4855 S13: -0.9028 REMARK 3 S21: 0.9058 S22: -0.0504 S23: -0.3371 REMARK 3 S31: 0.8889 S32: -0.1764 S33: -0.2233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 95 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2849 18.2878 -4.8477 REMARK 3 T TENSOR REMARK 3 T11: 0.5743 T22: 0.6802 REMARK 3 T33: 1.1705 T12: -0.0482 REMARK 3 T13: -0.0379 T23: -0.1834 REMARK 3 L TENSOR REMARK 3 L11: 8.1613 L22: 2.0964 REMARK 3 L33: 9.7222 L12: 3.1587 REMARK 3 L13: 6.7933 L23: 1.8842 REMARK 3 S TENSOR REMARK 3 S11: 0.4930 S12: 0.3368 S13: -2.0616 REMARK 3 S21: 0.1066 S22: -0.4970 S23: -1.4961 REMARK 3 S31: 2.0031 S32: -0.9107 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 24 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4187 49.3954 17.2670 REMARK 3 T TENSOR REMARK 3 T11: 1.0877 T22: 1.1438 REMARK 3 T33: 1.3097 T12: -0.0831 REMARK 3 T13: 0.0068 T23: -0.3325 REMARK 3 L TENSOR REMARK 3 L11: 0.6035 L22: 0.9897 REMARK 3 L33: 2.5053 L12: 0.6964 REMARK 3 L13: -1.1970 L23: -1.5313 REMARK 3 S TENSOR REMARK 3 S11: 0.2710 S12: -0.0923 S13: 0.6636 REMARK 3 S21: 0.9192 S22: -0.1592 S23: 1.1494 REMARK 3 S31: -0.4736 S32: -0.7548 S33: -0.0557 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 48 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8422 39.2749 13.2248 REMARK 3 T TENSOR REMARK 3 T11: 0.4250 T22: 0.3335 REMARK 3 T33: 0.3204 T12: 0.0110 REMARK 3 T13: -0.0694 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.1644 L22: 2.2329 REMARK 3 L33: 2.0633 L12: 2.7345 REMARK 3 L13: -9.8811 L23: 6.8622 REMARK 3 S TENSOR REMARK 3 S11: 0.2390 S12: -0.5381 S13: 0.4758 REMARK 3 S21: 0.4370 S22: 0.2114 S23: -0.2264 REMARK 3 S31: 0.8171 S32: 0.2305 S33: -0.4666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 62 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8606 29.7231 -3.7792 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.2743 REMARK 3 T33: 0.3130 T12: 0.0453 REMARK 3 T13: 0.0771 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 9.5477 L22: 8.6067 REMARK 3 L33: 9.2142 L12: 0.1240 REMARK 3 L13: 3.5182 L23: 1.5145 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: 0.7996 S13: -0.3570 REMARK 3 S21: -0.2764 S22: 0.0327 S23: -0.8739 REMARK 3 S31: 0.0196 S32: 0.5408 S33: -0.1077 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 96 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1104 39.3506 9.6849 REMARK 3 T TENSOR REMARK 3 T11: 0.7441 T22: 0.6624 REMARK 3 T33: 1.0348 T12: 0.1519 REMARK 3 T13: -0.0979 T23: -0.1088 REMARK 3 L TENSOR REMARK 3 L11: 2.0410 L22: 2.0126 REMARK 3 L33: 2.0194 L12: 1.9904 REMARK 3 L13: -3.5843 L23: 8.3275 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -1.0694 S13: -0.2315 REMARK 3 S21: 1.5191 S22: 1.0000 S23: -2.4248 REMARK 3 S31: 1.1494 S32: 2.5631 S33: -0.8511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.123 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3G36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M COCADYLATE SODIUM, SODIUM FORMATE REMARK 280 4.2M, PH 5.9, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.60100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.78950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.78950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.30050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.78950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.78950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.90150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.78950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.78950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.30050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.78950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.78950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.90150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.60100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 44.78950 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 44.78950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 13.30050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 MET A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 PRO A 17 REMARK 465 HIS A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 TYR A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 ILE A 30 REMARK 465 VAL A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 GLU A 34 REMARK 465 LYS A 35 REMARK 465 ILE A 36 REMARK 465 ASN A 37 REMARK 465 ALA A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 40 REMARK 465 SER A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 PRO A 103 REMARK 465 HIS A 104 REMARK 465 ARG A 105 REMARK 465 ASP A 106 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 MET B 6 REMARK 465 LEU B 7 REMARK 465 GLU B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 ASN B 16 REMARK 465 PRO B 17 REMARK 465 HIS B 18 REMARK 465 SER B 19 REMARK 465 GLU B 20 REMARK 465 TYR B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 ILE B 36 REMARK 465 ASN B 37 REMARK 465 ALA B 38 REMARK 465 GLU B 39 REMARK 465 LYS B 40 REMARK 465 SER B 41 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 PRO B 103 REMARK 465 HIS B 104 REMARK 465 ARG B 105 REMARK 465 ASP B 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 321 O HOH A 322 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 19.62 53.77 REMARK 500 ASN A 99 -161.58 -160.90 REMARK 500 ASP B 97 14.10 54.18 REMARK 500 ASP B 97 13.63 54.18 REMARK 500 ARG B 98 59.83 -91.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 201 DBREF 4RTA A 1 99 UNP Q9C005 DPY30_HUMAN 1 99 DBREF 4RTA B 1 99 UNP Q9C005 DPY30_HUMAN 1 99 SEQADV 4RTA LEU A 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA GLU A 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ARG A 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA PRO A 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA HIS A 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ARG A 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ASP A 106 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA LEU B 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA GLU B 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ARG B 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA PRO B 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA HIS B 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ARG B 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RTA ASP B 106 UNP Q9C005 EXPRESSION TAG SEQRES 1 A 106 MET GLU PRO GLU GLN MET LEU GLU GLY GLN THR GLN VAL SEQRES 2 A 106 ALA GLU ASN PRO HIS SER GLU TYR GLY LEU THR ASP ASN SEQRES 3 A 106 VAL GLU ARG ILE VAL GLU ASN GLU LYS ILE ASN ALA GLU SEQRES 4 A 106 LYS SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO SEQRES 5 A 106 THR ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU SEQRES 6 A 106 LEU GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO SEQRES 7 A 106 ASN PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN SEQRES 8 A 106 LYS ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS SEQRES 9 A 106 ARG ASP SEQRES 1 B 106 MET GLU PRO GLU GLN MET LEU GLU GLY GLN THR GLN VAL SEQRES 2 B 106 ALA GLU ASN PRO HIS SER GLU TYR GLY LEU THR ASP ASN SEQRES 3 B 106 VAL GLU ARG ILE VAL GLU ASN GLU LYS ILE ASN ALA GLU SEQRES 4 B 106 LYS SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO SEQRES 5 B 106 THR ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU SEQRES 6 B 106 LEU GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO SEQRES 7 B 106 ASN PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN SEQRES 8 B 106 LYS ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS SEQRES 9 B 106 ARG ASP HET FMT A 201 3 HET FMT A 202 3 HET FMT B 201 3 HETNAM FMT FORMIC ACID FORMUL 3 FMT 3(C H2 O2) FORMUL 6 HOH *57(H2 O) HELIX 1 1 PRO A 52 VAL A 61 1 10 HELIX 2 2 VAL A 61 ARG A 76 1 16 HELIX 3 3 ASN A 79 GLU A 96 1 18 HELIX 4 4 ILE B 30 LYS B 35 1 6 HELIX 5 5 ASP B 47 LEU B 51 5 5 HELIX 6 6 PRO B 52 VAL B 61 1 10 HELIX 7 7 VAL B 61 ARG B 76 1 16 HELIX 8 8 ASN B 79 GLU B 96 1 18 SITE 1 AC1 7 ASN A 79 PRO A 80 ILE A 81 GLU A 82 SITE 2 AC1 7 HOH A 303 HOH A 328 LYS B 92 SITE 1 AC2 7 GLU A 96 ASP A 97 ASN A 99 HOH A 301 SITE 2 AC2 7 HOH A 318 PRO B 80 FMT B 201 SITE 1 AC3 6 LYS A 92 FMT A 202 ASN B 79 PRO B 80 SITE 2 AC3 6 ILE B 81 GLU B 82 CRYST1 89.579 89.579 53.202 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018796 0.00000