HEADER LYASE 14-NOV-14 4RTB TITLE X-RAY STRUCTURE OF THE FEFE-HYDROGENASE MATURASE HYDG FROM TITLE 2 CARBOXYDOTHERMUS HYDROGENOFORMANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: CHY_1549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RADICAL SAM ENZYME, CO/CN SYNTHASE, FEFE-HYDROGENASE MATURASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NICOLET,A.PAGNIER,L.ZEPPIERI,L.MARTIN,P.AMARA,J.C.FONTECILLA-CAMPS REVDAT 3 20-SEP-23 4RTB 1 REMARK SEQADV REVDAT 2 25-FEB-15 4RTB 1 JRNL REVDAT 1 28-JAN-15 4RTB 0 JRNL AUTH Y.NICOLET,A.PAGNIER,L.ZEPPIERI,L.MARTIN,P.AMARA, JRNL AUTH 2 J.C.FONTECILLA-CAMPS JRNL TITL CRYSTAL STRUCTURE OF HYDG FROM CARBOXYDOTHERMUS JRNL TITL 2 HYDROGENOFORMANS: A TRIFUNCTIONAL [FEFE]-HYDROGENASE JRNL TITL 3 MATURASE. JRNL REF CHEMBIOCHEM V. 16 397 2015 JRNL REFN ISSN 1439-4227 JRNL PMID 25504963 JRNL DOI 10.1002/CBIC.201402661 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.870 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 34046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7910 - 6.3798 1.00 2725 146 0.1814 0.2332 REMARK 3 2 6.3798 - 5.0656 1.00 2713 147 0.2181 0.2179 REMARK 3 3 5.0656 - 4.4258 1.00 2717 137 0.1726 0.2245 REMARK 3 4 4.4258 - 4.0214 1.00 2744 141 0.1935 0.2153 REMARK 3 5 4.0214 - 3.7333 1.00 2724 142 0.2156 0.2694 REMARK 3 6 3.7333 - 3.5132 1.00 2705 147 0.2326 0.2678 REMARK 3 7 3.5132 - 3.3373 0.99 2714 144 0.2614 0.2736 REMARK 3 8 3.3373 - 3.1921 0.99 2709 146 0.2745 0.2647 REMARK 3 9 3.1921 - 3.0692 0.99 2681 143 0.3081 0.3291 REMARK 3 10 3.0692 - 2.9633 0.99 2732 138 0.3250 0.3454 REMARK 3 11 2.9633 - 2.8707 1.00 2712 136 0.3629 0.3781 REMARK 3 12 2.8707 - 2.7887 0.92 2482 121 0.4263 0.5092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3436 REMARK 3 ANGLE : 0.819 4669 REMARK 3 CHIRALITY : 0.030 541 REMARK 3 PLANARITY : 0.004 593 REMARK 3 DIHEDRAL : 18.915 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6071 -10.3539 14.4003 REMARK 3 T TENSOR REMARK 3 T11: 1.0034 T22: 0.9175 REMARK 3 T33: 0.8920 T12: -0.1766 REMARK 3 T13: 0.0274 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 0.6794 L22: 1.7436 REMARK 3 L33: 2.4231 L12: 0.7628 REMARK 3 L13: 0.8939 L23: 0.8726 REMARK 3 S TENSOR REMARK 3 S11: -0.5207 S12: 0.2191 S13: -0.4522 REMARK 3 S21: -0.2075 S22: 0.2130 S23: 0.3960 REMARK 3 S31: 0.3036 S32: -0.1326 S33: -0.4670 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0600 -2.6599 -3.7008 REMARK 3 T TENSOR REMARK 3 T11: 1.1799 T22: 0.7713 REMARK 3 T33: 0.7793 T12: -0.2531 REMARK 3 T13: -0.1170 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 0.1600 REMARK 3 L33: 0.0601 L12: 0.2025 REMARK 3 L13: 0.1472 L23: 0.0330 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.3474 S13: -0.0486 REMARK 3 S21: -0.6584 S22: 0.0780 S23: -0.0892 REMARK 3 S31: 0.1921 S32: -0.7318 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4174 14.2923 22.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.7227 T22: 0.9129 REMARK 3 T33: 0.6328 T12: -0.0145 REMARK 3 T13: 0.0054 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.3135 L22: 1.0565 REMARK 3 L33: 1.0585 L12: 0.3178 REMARK 3 L13: -0.1439 L23: -0.7632 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: -0.2704 S13: 0.0039 REMARK 3 S21: 0.1969 S22: -0.0126 S23: 0.0117 REMARK 3 S31: -0.0769 S32: 0.4108 S33: 0.0047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2478 1.3461 13.6549 REMARK 3 T TENSOR REMARK 3 T11: 0.8134 T22: 0.7064 REMARK 3 T33: 0.6555 T12: 0.0335 REMARK 3 T13: 0.0216 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 1.3884 L22: 1.5644 REMARK 3 L33: 1.1276 L12: 0.7237 REMARK 3 L13: 0.7221 L23: -0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.1946 S13: -0.2350 REMARK 3 S21: -0.2205 S22: 0.1768 S23: 0.1388 REMARK 3 S31: 0.4703 S32: -0.1201 S33: -0.0037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6241 11.7150 12.2678 REMARK 3 T TENSOR REMARK 3 T11: 0.6536 T22: 0.9030 REMARK 3 T33: 0.6085 T12: -0.0558 REMARK 3 T13: 0.0203 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 6.4098 L22: 3.9355 REMARK 3 L33: 1.9966 L12: 2.3318 REMARK 3 L13: 0.6823 L23: 2.5203 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.5715 S13: -0.8643 REMARK 3 S21: 0.3377 S22: 0.4066 S23: -0.4530 REMARK 3 S31: 0.2742 S32: 0.5832 S33: 0.5757 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5395 24.1676 1.1433 REMARK 3 T TENSOR REMARK 3 T11: 0.6480 T22: 0.6068 REMARK 3 T33: 0.6936 T12: -0.0556 REMARK 3 T13: 0.0975 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 4.7708 L22: 1.6874 REMARK 3 L33: 1.2672 L12: 0.6051 REMARK 3 L13: 2.2385 L23: 0.3073 REMARK 3 S TENSOR REMARK 3 S11: 0.1020 S12: -1.0399 S13: 0.4626 REMARK 3 S21: -0.1692 S22: -0.2889 S23: 0.0971 REMARK 3 S31: -0.0810 S32: -0.2770 S33: -0.2005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 418 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2880 31.5842 -7.5681 REMARK 3 T TENSOR REMARK 3 T11: 1.0282 T22: 1.0274 REMARK 3 T33: 0.9422 T12: 0.0143 REMARK 3 T13: 0.0778 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2231 L22: 0.2962 REMARK 3 L33: 0.1937 L12: -0.2779 REMARK 3 L13: -0.0141 L23: 0.0634 REMARK 3 S TENSOR REMARK 3 S11: 0.7186 S12: 0.5781 S13: 0.0279 REMARK 3 S21: -1.2982 S22: -0.4600 S23: 0.1392 REMARK 3 S31: -0.4409 S32: 0.1685 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7428 REMARK 200 MONOCHROMATOR : SI(000) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.789 REMARK 200 RESOLUTION RANGE LOW (A) : 47.784 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AND SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1R30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1M, HEPES 100 MM PH REMARK 280 7.5, 0.5% PEG 8000 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.11500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.90000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.11500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.70000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.90000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 338 REMARK 465 LYS A 339 REMARK 465 GLY A 340 REMARK 465 GLU A 341 REMARK 465 GLU A 342 REMARK 465 SER A 350 REMARK 465 ARG A 380 REMARK 465 THR A 381 REMARK 465 GLY A 382 REMARK 465 LYS A 383 REMARK 465 THR A 384 REMARK 465 PHE A 385 REMARK 465 MET A 386 REMARK 465 GLY A 387 REMARK 465 LEU A 388 REMARK 465 ALA A 389 REMARK 465 ASP A 390 REMARK 465 ARG A 391 REMARK 465 GLY A 392 REMARK 465 GLN A 393 REMARK 465 ILE A 394 REMARK 465 LYS A 395 REMARK 465 ASP A 396 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 LYS A 453 REMARK 465 ASP A 454 REMARK 465 VAL A 455 REMARK 465 PHE A 456 REMARK 465 ILE A 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 HIS A 0 ND1 CD2 CE1 NE2 REMARK 470 MET A 1 SD CE REMARK 470 ARG A 11 CD NE CZ NH1 NH2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 38 CD OE1 OE2 REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 ARG A 99 NE CZ NH1 NH2 REMARK 470 GLU A 112 CD OE1 OE2 REMARK 470 LYS A 171 CD CE NZ REMARK 470 GLU A 174 CD OE1 OE2 REMARK 470 LYS A 177 CD CE NZ REMARK 470 LYS A 178 CD CE NZ REMARK 470 ARG A 197 CZ NH1 NH2 REMARK 470 GLU A 198 CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 254 CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 307 NE CZ NH1 NH2 REMARK 470 GLN A 310 CD OE1 NE2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 GLY A 337 C O REMARK 470 THR A 373 OG1 CG2 REMARK 470 TYR A 376 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 397 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 ASP A 434 CG OD1 OD2 REMARK 470 LEU A 435 CG CD1 CD2 REMARK 470 ASN A 437 CG OD1 ND2 REMARK 470 LYS A 450 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 -77.78 -32.02 REMARK 500 ASN A 91 53.70 -155.00 REMARK 500 LYS A 102 -27.29 66.77 REMARK 500 ASN A 164 74.61 -112.97 REMARK 500 ALA A 166 152.38 -48.13 REMARK 500 GLU A 189 -57.58 63.74 REMARK 500 PHE A 371 58.17 -146.86 REMARK 500 CYS A 372 -44.92 -131.04 REMARK 500 THR A 373 -156.16 65.12 REMARK 500 CYS A 375 -82.09 -51.96 REMARK 500 TYR A 376 16.15 -140.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 502 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 501 O REMARK 620 2 SF4 A 502 S1 104.9 REMARK 620 3 SF4 A 502 S2 79.2 103.3 REMARK 620 4 SF4 A 502 S3 147.3 105.6 104.9 REMARK 620 5 SAM A 501 N 62.8 167.6 74.4 86.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 DBREF 4RTB A 1 451 UNP Q3ABV3 Q3ABV3_CARHZ 1 457 SEQADV 4RTB MET A -19 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB GLY A -18 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB SER A -17 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB SER A -16 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -15 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -14 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -13 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -12 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -11 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A -10 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB SER A -9 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB SER A -8 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB GLY A -7 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB LEU A -6 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB VAL A -5 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB PRO A -4 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB ARG A -3 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB GLY A -2 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB SER A -1 UNP Q3ABV3 EXPRESSION TAG SEQADV 4RTB HIS A 0 UNP Q3ABV3 EXPRESSION TAG SEQRES 1 A 477 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 477 LEU VAL PRO ARG GLY SER HIS MET THR GLN GLU ILE ILE SEQRES 3 A 477 THR LEU VAL GLN ARG THR TYR GLU ILE VAL ASN LYS VAL SEQRES 4 A 477 ASN ARG ASN PRO LYS GLU GLU ILE SER GLN ILE ILE GLN SEQRES 5 A 477 LYS LEU GLN LYS GLY GLU ARG LEU SER LEU ILE GLU ALA SEQRES 6 A 477 GLY ILE ALA PHE ALA ASN ASP THR GLU GLU LEU ASP GLN SEQRES 7 A 477 ILE LEU PHE TRP GLN ALA ARG LYS VAL LYS GLU GLU ILE SEQRES 8 A 477 TYR GLY LYS ARG ILE VAL LEU PHE ALA PRO LEU TYR LEU SEQRES 9 A 477 SER ASN ILE CYS ILE ASN ASN CYS SER TYR CYS SER PHE SEQRES 10 A 477 ARG ARG GLU ASN LYS GLU LEU SER ARG VAL ARG LEU SER SEQRES 11 A 477 LEU GLU GLU ALA VAL ASP GLU ALA LYS ALA ILE ARG GLU SEQRES 12 A 477 MET GLY HIS THR ARG ILE LEU LEU VAL MET GLY GLU GLU SEQRES 13 A 477 PRO GLU ASP LYS THR LEU SER TYR LEU GLU GLU ILE ILE SEQRES 14 A 477 PRO ALA ILE TYR SER GLU VAL ASP ILE ARG ARG ILE ASN SEQRES 15 A 477 VAL ASN ILE ALA PRO LEU THR LEU LYS GLY TYR GLU ARG SEQRES 16 A 477 LEU LYS LYS LEU LYS ILE GLY THR TYR GLN LEU PHE GLN SEQRES 17 A 477 GLU SER TYR ASN PRO GLU VAL TYR ARG GLU VAL HIS LEU SEQRES 18 A 477 ASP GLY PRO LYS THR ASN PHE LEU TRP ARG LEU ASN ALA SEQRES 19 A 477 VAL GLU ARG ALA ILE GLU ALA GLY ILE ASP ASP ILE GLY SEQRES 20 A 477 ILE GLY ALA LEU PHE GLY LEU GLY ASP PRO LEU PHE GLU SEQRES 21 A 477 LEU LEU GLY VAL ILE ALA HIS ALA ASP TYR LEU LYS LYS SEQRES 22 A 477 LYS PHE GLY ILE GLY PRO HIS THR VAL SER VAL PRO ARG SEQRES 23 A 477 LEU LYS PRO ALA LEU ASN SER VAL PHE SER ASN ASP TYR SEQRES 24 A 477 LYS ILE SER ASP HIS LYS PHE LYS LYS ILE VAL ALA LEU SEQRES 25 A 477 LEU ARG ILE MET LEU PRO TYR THR GLY ILE ILE LEU SER SEQRES 26 A 477 THR ARG GLU PRO GLN HIS LEU ARG ASP GLU LEU VAL GLU SEQRES 27 A 477 LEU GLY VAL SER GLN MET SER ALA ALA SER ARG THR GLY SEQRES 28 A 477 PRO GLY GLU TYR ARG GLY LYS LYS GLY GLU GLU GLU ARG SEQRES 29 A 477 GLN GLN PHE LEU LEU SER ASP HIS ARG SER LEU ALA GLU SEQRES 30 A 477 ILE VAL GLU VAL LEU ILE ASP LYS GLY PHE LEU PRO SER SEQRES 31 A 477 PHE CYS THR ALA CYS TYR ARG LYS ARG ARG THR GLY LYS SEQRES 32 A 477 THR PHE MET GLY LEU ALA ASP ARG GLY GLN ILE LYS ASP SEQRES 33 A 477 PHE CYS THR PRO ASP ALA LEU PHE SER PHE VAL GLU TYR SEQRES 34 A 477 LEU TYR GLU ILE ARG ASP LYS HIS PRO GLU LEU TYR LYS SEQRES 35 A 477 LYS GLY ASN GLY TYR LEU LEU GLN VAL VAL LYS ASP LEU SEQRES 36 A 477 PRO ASN PHE GLU ASN ILE GLY ARG ALA ILE GLU TYR ILE SEQRES 37 A 477 LEU LYS GLY GLU LYS ASP VAL PHE ILE HET SAM A 501 27 HET SF4 A 502 8 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CL CHLORIDE ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 SF4 FE4 S4 FORMUL 4 CL 5(CL 1-) FORMUL 9 HOH *3(H2 O) HELIX 1 1 THR A 2 ASN A 20 1 19 HELIX 2 2 ASN A 22 GLY A 37 1 16 HELIX 3 3 SER A 41 ASN A 51 1 11 HELIX 4 4 THR A 53 TYR A 72 1 20 HELIX 5 5 ARG A 98 LYS A 102 5 5 HELIX 6 6 SER A 110 GLY A 125 1 16 HELIX 7 7 PRO A 137 VAL A 156 1 20 HELIX 8 8 THR A 169 LYS A 178 1 10 HELIX 9 9 ASN A 192 HIS A 200 1 9 HELIX 10 10 GLY A 203 THR A 206 5 4 HELIX 11 11 ASN A 207 ASN A 213 1 7 HELIX 12 12 ASN A 213 ALA A 221 1 9 HELIX 13 13 ASP A 236 GLY A 256 1 21 HELIX 14 14 SER A 282 LEU A 297 1 16 HELIX 15 15 PRO A 309 GLY A 320 1 12 HELIX 16 16 SER A 354 LYS A 365 1 12 HELIX 17 17 CYS A 398 ILE A 413 1 16 HELIX 18 18 HIS A 417 LEU A 435 1 19 HELIX 19 19 PHE A 438 LEU A 449 1 12 SHEET 1 A10 LEU A 368 SER A 370 0 SHEET 2 A10 ARG A 75 SER A 85 1 N ILE A 76 O LEU A 368 SHEET 3 A10 GLN A 323 SER A 325 1 O MET A 324 N VAL A 77 SHEET 4 A10 GLY A 301 LEU A 304 1 N LEU A 304 O GLN A 323 SHEET 5 A10 THR A 261 SER A 263 1 N VAL A 262 O GLY A 301 SHEET 6 A10 ILE A 226 GLY A 229 1 N ILE A 228 O SER A 263 SHEET 7 A10 TYR A 184 GLN A 185 1 N TYR A 184 O GLY A 227 SHEET 8 A10 ARG A 160 ASN A 164 1 N VAL A 163 O GLN A 185 SHEET 9 A10 ARG A 128 MET A 133 1 N ILE A 129 O ASN A 162 SHEET 10 A10 ARG A 75 SER A 85 1 N LEU A 82 O VAL A 132 LINK O SAM A 501 FE4 SF4 A 502 1555 1555 2.57 LINK N SAM A 501 FE4 SF4 A 502 1555 1555 2.76 SITE 1 AC1 16 TYR A 94 CYS A 95 VAL A 132 MET A 133 SITE 2 AC1 16 ASN A 164 PHE A 187 GLU A 189 LYS A 205 SITE 3 AC1 16 ARG A 211 LEU A 231 ARG A 266 LEU A 267 SITE 4 AC1 16 LYS A 268 GLN A 346 PHE A 347 SF4 A 502 SITE 1 AC2 7 CYS A 88 ASN A 90 CYS A 92 CYS A 95 SITE 2 AC2 7 PHE A 97 ARG A 98 SAM A 501 SITE 1 AC3 5 ARG A 128 ARG A 160 ASN A 162 HIS A 260 SITE 2 AC3 5 GLN A 323 SITE 1 AC4 1 SER A 354 SITE 1 AC5 1 HIS A 417 SITE 1 AC6 1 GLN A 310 SITE 1 AC7 3 SER A 325 ALA A 327 SER A 328 CRYST1 92.230 92.230 167.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005967 0.00000