HEADER TRANSFERASE/DNA 15-NOV-14 4RTO TITLE COMPLEX OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH TITLE 2 SINEFUNGIN AND WITH DNA CONTAINING PROXIMAL PAP REGULON SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ADENINE METHYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*TP*AP*AP*AP*GP*AP*TP*CP*G)-3'); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*AP*CP*GP*AP*TP*CP*TP*TP*TP*AP*A)-3'); COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MDS42; SOURCE 5 GENE: DAM, ECMDS42_2833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL KEYWDS 2 VIRULENCE, METHYLATION-INDEPENDENT TRANSCRIPTIONAL REPRESSOR, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 20-SEP-23 4RTO 1 REMARK SEQADV REVDAT 3 20-MAY-15 4RTO 1 JRNL REVDAT 2 22-APR-15 4RTO 1 JRNL REVDAT 1 15-APR-15 4RTO 0 JRNL AUTH J.R.HORTON,X.ZHANG,R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURES OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE JRNL TITL 2 (DAM) IN COMPLEX WITH A NON-GATC SEQUENCE: POTENTIAL JRNL TITL 3 IMPLICATIONS FOR METHYLATION-INDEPENDENT TRANSCRIPTIONAL JRNL TITL 4 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 43 4296 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25845600 JRNL DOI 10.1093/NAR/GKV251 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 9564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8583 - 4.2660 0.99 2392 130 0.1986 0.2162 REMARK 3 2 4.2660 - 3.3870 1.00 2260 130 0.2005 0.2464 REMARK 3 3 3.3870 - 2.9591 1.00 2249 107 0.2486 0.3050 REMARK 3 4 2.9591 - 2.6900 0.98 2157 139 0.3070 0.3165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2539 REMARK 3 ANGLE : 0.483 3551 REMARK 3 CHIRALITY : 0.019 387 REMARK 3 PLANARITY : 0.002 384 REMARK 3 DIHEDRAL : 18.101 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8587 3.2483 91.7545 REMARK 3 T TENSOR REMARK 3 T11: 0.5612 T22: 0.5261 REMARK 3 T33: 0.5751 T12: 0.1089 REMARK 3 T13: -0.0914 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 5.0602 L22: 3.5533 REMARK 3 L33: 4.8828 L12: 3.7579 REMARK 3 L13: 3.8848 L23: 1.8291 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.7726 S13: 0.0930 REMARK 3 S21: -0.7408 S22: -0.3925 S23: 0.7415 REMARK 3 S31: 0.9062 S32: -0.4788 S33: 0.4502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 18:68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4358 -7.4408 93.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.3977 REMARK 3 T33: 0.6289 T12: -0.0273 REMARK 3 T13: -0.1790 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.9542 L22: 2.9660 REMARK 3 L33: 4.5153 L12: -1.3340 REMARK 3 L13: -1.1508 L23: -0.5091 REMARK 3 S TENSOR REMARK 3 S11: 0.4076 S12: 0.5301 S13: -0.4610 REMARK 3 S21: -0.4688 S22: 0.1089 S23: 0.8242 REMARK 3 S31: 0.3799 S32: -0.7272 S33: -0.4772 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 69:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4589 11.1987 105.7334 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.2638 REMARK 3 T33: 0.3735 T12: 0.0600 REMARK 3 T13: 0.0094 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 4.3721 L22: 6.5188 REMARK 3 L33: 6.5443 L12: 1.3834 REMARK 3 L13: 0.1860 L23: -2.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.1999 S12: -0.4201 S13: 0.3758 REMARK 3 S21: 0.4722 S22: 0.2513 S23: -0.0170 REMARK 3 S31: -0.1770 S32: -0.2124 S33: -0.0490 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 127:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6751 4.3100 100.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.4342 REMARK 3 T33: 0.3020 T12: 0.0361 REMARK 3 T13: -0.0637 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 3.1740 L22: 7.5863 REMARK 3 L33: 3.6435 L12: 0.5882 REMARK 3 L13: -0.3032 L23: -0.8013 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: 0.0627 S13: -0.2141 REMARK 3 S21: 0.0356 S22: 0.0804 S23: 0.6004 REMARK 3 S31: 0.1176 S32: -0.2554 S33: -0.1939 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 163:228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7092 -9.8989 82.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.7109 T22: 0.6413 REMARK 3 T33: 0.4783 T12: 0.1753 REMARK 3 T13: -0.1131 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 5.6060 L22: 5.3739 REMARK 3 L33: 3.9476 L12: -1.6054 REMARK 3 L13: 0.4717 L23: -1.2740 REMARK 3 S TENSOR REMARK 3 S11: 0.5020 S12: 0.6555 S13: -0.5864 REMARK 3 S21: -1.0433 S22: -0.2904 S23: -0.0572 REMARK 3 S31: 1.0875 S32: 0.6362 S33: -0.1909 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 229:270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3558 -4.7669 72.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.9721 T22: 0.9128 REMARK 3 T33: 0.6652 T12: 0.1693 REMARK 3 T13: -0.1568 T23: -0.1878 REMARK 3 L TENSOR REMARK 3 L11: 2.6421 L22: 9.6369 REMARK 3 L33: 0.4992 L12: -3.1075 REMARK 3 L13: -0.0526 L23: -1.7614 REMARK 3 S TENSOR REMARK 3 S11: 0.8152 S12: 0.5720 S13: -0.0252 REMARK 3 S21: -1.5830 S22: -0.7533 S23: 0.2182 REMARK 3 S31: 1.0309 S32: 0.4764 S33: -0.2415 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0262 18.6193 85.4771 REMARK 3 T TENSOR REMARK 3 T11: 0.4089 T22: 0.7563 REMARK 3 T33: 0.6910 T12: -0.1229 REMARK 3 T13: -0.0153 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 6.8487 L22: 2.9631 REMARK 3 L33: 4.7232 L12: -1.1394 REMARK 3 L13: -2.6659 L23: 0.1781 REMARK 3 S TENSOR REMARK 3 S11: -0.9809 S12: 1.4480 S13: 1.2143 REMARK 3 S21: -0.2649 S22: 0.5994 S23: -0.3209 REMARK 3 S31: 0.0673 S32: -0.0972 S33: 0.4803 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN G AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3283 18.5094 85.6743 REMARK 3 T TENSOR REMARK 3 T11: 0.4139 T22: 0.7937 REMARK 3 T33: 0.6490 T12: -0.0429 REMARK 3 T13: 0.1156 T23: 0.0898 REMARK 3 L TENSOR REMARK 3 L11: 2.2584 L22: 4.9193 REMARK 3 L33: 4.0714 L12: -3.1871 REMARK 3 L13: -1.8381 L23: 1.8409 REMARK 3 S TENSOR REMARK 3 S11: -0.6826 S12: 1.1771 S13: 0.6882 REMARK 3 S21: -0.3293 S22: 0.3062 S23: -0.7056 REMARK 3 S31: 0.1972 S32: 0.4673 S33: 0.3131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 2G1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG200, 100MM KCL, 10MM MGSO4, REMARK 280 100MM HEPES BUFFER, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.96800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.60550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.60550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.96800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.62700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 196 REMARK 465 HIS A 197 REMARK 465 THR A 198 REMARK 465 ASN A 199 REMARK 465 ILE A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 ARG A 258 REMARK 465 GLY A 271 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 SER A 175 OG REMARK 470 SER A 176 OG REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 SER A 188 OG REMARK 470 SER A 200 OG REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 220 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 231 CG SD CE REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 SER A 250 OG REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G1P RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH REMARK 900 COGNATE SEQUENCE REMARK 900 RELATED ID: 2ORE RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF E.COLI DAM REMARK 900 RELATED ID: 4RTJ RELATED DB: PDB REMARK 900 RELATED ID: 4RTK RELATED DB: PDB REMARK 900 RELATED ID: 4RTL RELATED DB: PDB REMARK 900 RELATED ID: 4RTM RELATED DB: PDB REMARK 900 RELATED ID: 4RTN RELATED DB: PDB REMARK 900 RELATED ID: 4RTP RELATED DB: PDB REMARK 900 RELATED ID: 4RTQ RELATED DB: PDB REMARK 900 RELATED ID: 4RTR RELATED DB: PDB REMARK 900 RELATED ID: 4RTS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA REMARK 999 BECAUSE OF EXTRA DENSITY. DBREF 4RTO A 1 278 UNP H0Q7C9 H0Q7C9_ECOLI 1 278 DBREF 4RTO F 1 11 PDB 4RTO 4RTO 1 11 DBREF 4RTO G 1 11 PDB 4RTO 4RTO 1 11 SEQADV 4RTO MET A -19 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO GLY A -18 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A -17 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A -16 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -15 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -14 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -13 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -12 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -11 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A -10 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A -9 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A -8 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO GLY A -7 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO LEU A -6 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO VAL A -5 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO PRO A -4 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO ARG A -3 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO GLY A -2 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A -1 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO HIS A 0 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTO SER A 175 UNP H0Q7C9 ALA 175 SEE REMARK 999 SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ASN ARG ALA SEQRES 3 A 298 PHE LEU LYS TRP ALA GLY GLY LYS TYR PRO LEU LEU ASP SEQRES 4 A 298 ASP ILE LYS ARG HIS LEU PRO LYS GLY GLU CYS LEU VAL SEQRES 5 A 298 GLU PRO PHE VAL GLY ALA GLY SER VAL PHE LEU ASN THR SEQRES 6 A 298 ASP PHE SER ARG TYR ILE LEU ALA ASP ILE ASN SER ASP SEQRES 7 A 298 LEU ILE SER LEU TYR ASN ILE VAL LYS MET ARG THR ASP SEQRES 8 A 298 GLU TYR VAL GLN ALA ALA ARG GLU LEU PHE VAL PRO GLU SEQRES 9 A 298 THR ASN CYS ALA GLU VAL TYR TYR GLN PHE ARG GLU GLU SEQRES 10 A 298 PHE ASN LYS SER GLN ASP PRO PHE ARG ARG ALA VAL LEU SEQRES 11 A 298 PHE LEU TYR LEU ASN ARG TYR GLY TYR ASN GLY LEU CYS SEQRES 12 A 298 ARG TYR ASN LEU ARG GLY GLU PHE ASN VAL PRO PHE GLY SEQRES 13 A 298 ARG TYR LYS LYS PRO TYR PHE PRO GLU ALA GLU LEU TYR SEQRES 14 A 298 HIS PHE ALA GLU LYS ALA GLN ASN ALA PHE PHE TYR CYS SEQRES 15 A 298 GLU SER TYR ALA ASP SER MET ALA ARG ALA ASP ASP SER SEQRES 16 A 298 SER VAL VAL TYR CYS ASP PRO PRO TYR ALA PRO LEU SER SEQRES 17 A 298 ALA THR ALA ASN PHE THR ALA TYR HIS THR ASN SER PHE SEQRES 18 A 298 THR LEU GLU GLN GLN ALA HIS LEU ALA GLU ILE ALA GLU SEQRES 19 A 298 GLY LEU VAL GLU ARG HIS ILE PRO VAL LEU ILE SER ASN SEQRES 20 A 298 HIS ASP THR MET LEU THR ARG GLU TRP TYR GLN ARG ALA SEQRES 21 A 298 LYS LEU HIS VAL VAL LYS VAL ARG ARG SER ILE SER SER SEQRES 22 A 298 ASN GLY GLY THR ARG LYS LYS VAL ASP GLU LEU LEU ALA SEQRES 23 A 298 LEU TYR LYS PRO GLY VAL VAL SER PRO ALA LYS LYS SEQRES 1 F 11 DT DT DT DA DA DA DG DA DT DC DG SEQRES 1 G 11 DA DC DG DA DT DC DT DT DT DA DA HET SFG A 301 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 4 SFG C15 H23 N7 O5 FORMUL 5 HOH *19(H2 O) HELIX 1 1 LEU A 17 HIS A 24 1 8 HELIX 2 2 GLY A 39 ASN A 44 1 6 HELIX 3 3 ASN A 56 ARG A 69 1 14 HELIX 4 4 ARG A 69 GLU A 79 1 11 HELIX 5 5 VAL A 82 ASN A 86 5 5 HELIX 6 6 CYS A 87 SER A 101 1 15 HELIX 7 7 ASP A 103 GLY A 118 1 16 HELIX 8 8 TYR A 119 LEU A 122 5 4 HELIX 9 9 PRO A 144 ALA A 155 1 12 HELIX 10 10 SER A 164 MET A 169 1 6 HELIX 11 11 ALA A 170 ALA A 172 5 3 HELIX 12 12 THR A 202 GLU A 218 1 17 HELIX 13 13 THR A 230 TYR A 237 1 8 SHEET 1 A 7 ALA A 158 CYS A 162 0 SHEET 2 A 7 ARG A 49 ASP A 54 1 N TYR A 50 O PHE A 159 SHEET 3 A 7 CYS A 30 GLU A 33 1 N LEU A 31 O ILE A 51 SHEET 4 A 7 SER A 176 CYS A 180 1 O VAL A 177 N CYS A 30 SHEET 5 A 7 VAL A 223 HIS A 228 1 O LEU A 224 N CYS A 180 SHEET 6 A 7 VAL A 261 TYR A 268 -1 O LEU A 264 N ASN A 227 SHEET 7 A 7 LYS A 241 ARG A 249 -1 N HIS A 243 O LEU A 265 SITE 1 AC1 14 TRP A 10 ALA A 11 GLY A 12 GLY A 13 SITE 2 AC1 14 PRO A 34 PHE A 35 VAL A 36 ALA A 38 SITE 3 AC1 14 SER A 40 ASP A 54 ILE A 55 SER A 164 SITE 4 AC1 14 TYR A 165 ASP A 181 CRYST1 35.936 63.254 143.211 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000