data_4RTP # _entry.id 4RTP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI NDB NA3307 ? ? RCSB RCSB087783 ? ? PDB 4RTP pdb_00004rtp 10.2210/pdb4rtp/pdb WWPDB D_1000087783 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 2G1P PDB 'Structure of E. coli DNA adenine methyltransferase (DAM) with Cognate Sequence' unspecified 2ORE PDB 'Binary structure of E.coli DAM' unspecified 4RTJ PDB . unspecified 4RTK PDB . unspecified 4RTL PDB . unspecified 4RTM PDB . unspecified 4RTN PDB . unspecified 4RTO PDB . unspecified 4RTQ PDB . unspecified 4RTR PDB . unspecified 4RTS PDB . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RTP _pdbx_database_status.recvd_initial_deposition_date 2014-11-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horton, J.R.' 1 'Cheng, X.' 2 # _citation.id primary _citation.title ;Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 43 _citation.page_first 4296 _citation.page_last 4308 _citation.year 2015 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25845600 _citation.pdbx_database_id_DOI 10.1093/nar/gkv251 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horton, J.R.' 1 ? primary 'Zhang, X.' 2 ? primary 'Blumenthal, R.M.' 3 ? primary 'Cheng, X.' 4 ? # _cell.entry_id 4RTP _cell.length_a 35.817 _cell.length_b 63.225 _cell.length_c 144.102 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RTP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA adenine methylase' 34330.961 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*TP*AP*AP*AP*GP*AP*TP*CP*G)-3') ; 3372.234 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*CP*GP*AP*TP*CP*TP*TP*TP*AP*A)-3') ; 3332.210 1 ? ? ? ? 4 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 5 water nat water 18.015 25 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHMKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLI SLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKK PYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERH IPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK ; ;MGSSHHHHHHSSGLVPRGSHMKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLI SLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKK PYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERH IPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DA)(DA)(DA)(DG)(DA)(DT)(DC)(DG)' TTTAAAGATCG F ? 3 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DA)(DT)(DC)(DT)(DT)(DT)(DA)(DA)' ACGATCTTTAA G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 LYS n 1 23 LYS n 1 24 ASN n 1 25 ARG n 1 26 ALA n 1 27 PHE n 1 28 LEU n 1 29 LYS n 1 30 TRP n 1 31 ALA n 1 32 GLY n 1 33 GLY n 1 34 LYS n 1 35 TYR n 1 36 PRO n 1 37 LEU n 1 38 LEU n 1 39 ASP n 1 40 ASP n 1 41 ILE n 1 42 LYS n 1 43 ARG n 1 44 HIS n 1 45 LEU n 1 46 PRO n 1 47 LYS n 1 48 GLY n 1 49 GLU n 1 50 CYS n 1 51 LEU n 1 52 VAL n 1 53 GLU n 1 54 PRO n 1 55 PHE n 1 56 VAL n 1 57 GLY n 1 58 ALA n 1 59 GLY n 1 60 SER n 1 61 VAL n 1 62 PHE n 1 63 LEU n 1 64 ASN n 1 65 THR n 1 66 ASP n 1 67 PHE n 1 68 SER n 1 69 ARG n 1 70 TYR n 1 71 ILE n 1 72 LEU n 1 73 ALA n 1 74 ASP n 1 75 ILE n 1 76 ASN n 1 77 SER n 1 78 ASP n 1 79 LEU n 1 80 ILE n 1 81 SER n 1 82 LEU n 1 83 TYR n 1 84 ASN n 1 85 ILE n 1 86 VAL n 1 87 LYS n 1 88 MET n 1 89 ARG n 1 90 THR n 1 91 ASP n 1 92 GLU n 1 93 TYR n 1 94 VAL n 1 95 GLN n 1 96 ALA n 1 97 ALA n 1 98 ARG n 1 99 GLU n 1 100 LEU n 1 101 PHE n 1 102 VAL n 1 103 PRO n 1 104 GLU n 1 105 THR n 1 106 ASN n 1 107 CYS n 1 108 ALA n 1 109 GLU n 1 110 VAL n 1 111 TYR n 1 112 TYR n 1 113 GLN n 1 114 PHE n 1 115 ARG n 1 116 GLU n 1 117 GLU n 1 118 PHE n 1 119 ASN n 1 120 LYS n 1 121 SER n 1 122 GLN n 1 123 ASP n 1 124 PRO n 1 125 PHE n 1 126 ARG n 1 127 ARG n 1 128 ALA n 1 129 VAL n 1 130 LEU n 1 131 PHE n 1 132 LEU n 1 133 TYR n 1 134 LEU n 1 135 ASN n 1 136 ARG n 1 137 TYR n 1 138 GLY n 1 139 TYR n 1 140 ASN n 1 141 GLY n 1 142 LEU n 1 143 CYS n 1 144 ARG n 1 145 TYR n 1 146 ASN n 1 147 LEU n 1 148 ARG n 1 149 GLY n 1 150 GLU n 1 151 PHE n 1 152 ASN n 1 153 VAL n 1 154 PRO n 1 155 PHE n 1 156 GLY n 1 157 ARG n 1 158 TYR n 1 159 LYS n 1 160 LYS n 1 161 PRO n 1 162 TYR n 1 163 PHE n 1 164 PRO n 1 165 GLU n 1 166 ALA n 1 167 GLU n 1 168 LEU n 1 169 TYR n 1 170 HIS n 1 171 PHE n 1 172 ALA n 1 173 GLU n 1 174 LYS n 1 175 ALA n 1 176 GLN n 1 177 ASN n 1 178 ALA n 1 179 PHE n 1 180 PHE n 1 181 TYR n 1 182 CYS n 1 183 GLU n 1 184 SER n 1 185 TYR n 1 186 ALA n 1 187 ASP n 1 188 SER n 1 189 MET n 1 190 ALA n 1 191 ARG n 1 192 ALA n 1 193 ASP n 1 194 ASP n 1 195 SER n 1 196 SER n 1 197 VAL n 1 198 VAL n 1 199 TYR n 1 200 CYS n 1 201 ASP n 1 202 PRO n 1 203 PRO n 1 204 TYR n 1 205 ALA n 1 206 PRO n 1 207 LEU n 1 208 SER n 1 209 ALA n 1 210 THR n 1 211 ALA n 1 212 ASN n 1 213 PHE n 1 214 THR n 1 215 ALA n 1 216 TYR n 1 217 HIS n 1 218 THR n 1 219 ASN n 1 220 SER n 1 221 PHE n 1 222 THR n 1 223 LEU n 1 224 GLU n 1 225 GLN n 1 226 GLN n 1 227 ALA n 1 228 HIS n 1 229 LEU n 1 230 ALA n 1 231 GLU n 1 232 ILE n 1 233 ALA n 1 234 GLU n 1 235 GLY n 1 236 LEU n 1 237 VAL n 1 238 GLU n 1 239 ARG n 1 240 HIS n 1 241 ILE n 1 242 PRO n 1 243 VAL n 1 244 LEU n 1 245 ILE n 1 246 SER n 1 247 ASN n 1 248 HIS n 1 249 ASP n 1 250 THR n 1 251 MET n 1 252 LEU n 1 253 THR n 1 254 ARG n 1 255 GLU n 1 256 TRP n 1 257 TYR n 1 258 GLN n 1 259 ARG n 1 260 ALA n 1 261 LYS n 1 262 LEU n 1 263 HIS n 1 264 VAL n 1 265 VAL n 1 266 LYS n 1 267 VAL n 1 268 ARG n 1 269 ARG n 1 270 SER n 1 271 ILE n 1 272 SER n 1 273 SER n 1 274 ASN n 1 275 GLY n 1 276 GLY n 1 277 THR n 1 278 ARG n 1 279 LYS n 1 280 LYS n 1 281 VAL n 1 282 ASP n 1 283 GLU n 1 284 LEU n 1 285 LEU n 1 286 ALA n 1 287 LEU n 1 288 TYR n 1 289 LYS n 1 290 PRO n 1 291 GLY n 1 292 VAL n 1 293 VAL n 1 294 SER n 1 295 PRO n 1 296 ALA n 1 297 LYS n 1 298 LYS n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DA n 2 6 DA n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DC n 2 11 DG n 3 1 DA n 3 2 DC n 3 3 DG n 3 4 DA n 3 5 DT n 3 6 DC n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DA n 3 11 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dam, ECMDS42_2833' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'K-12 substr. MDS42' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1110693 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'HMS174(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP H0Q7C9_ECOLI H0Q7C9 1 ;MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAAREL FVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRA KLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK ; 1 ? 2 PDB 4RTP 4RTP 2 ? ? ? 3 PDB 4RTP 4RTP 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RTP A 21 ? 298 ? H0Q7C9 1 ? 278 ? 1 278 2 2 4RTP F 1 ? 11 ? 4RTP 1 ? 11 ? 1 11 3 3 4RTP G 1 ? 11 ? 4RTP 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RTP MET A 1 ? UNP H0Q7C9 ? ? 'expression tag' -19 1 1 4RTP GLY A 2 ? UNP H0Q7C9 ? ? 'expression tag' -18 2 1 4RTP SER A 3 ? UNP H0Q7C9 ? ? 'expression tag' -17 3 1 4RTP SER A 4 ? UNP H0Q7C9 ? ? 'expression tag' -16 4 1 4RTP HIS A 5 ? UNP H0Q7C9 ? ? 'expression tag' -15 5 1 4RTP HIS A 6 ? UNP H0Q7C9 ? ? 'expression tag' -14 6 1 4RTP HIS A 7 ? UNP H0Q7C9 ? ? 'expression tag' -13 7 1 4RTP HIS A 8 ? UNP H0Q7C9 ? ? 'expression tag' -12 8 1 4RTP HIS A 9 ? UNP H0Q7C9 ? ? 'expression tag' -11 9 1 4RTP HIS A 10 ? UNP H0Q7C9 ? ? 'expression tag' -10 10 1 4RTP SER A 11 ? UNP H0Q7C9 ? ? 'expression tag' -9 11 1 4RTP SER A 12 ? UNP H0Q7C9 ? ? 'expression tag' -8 12 1 4RTP GLY A 13 ? UNP H0Q7C9 ? ? 'expression tag' -7 13 1 4RTP LEU A 14 ? UNP H0Q7C9 ? ? 'expression tag' -6 14 1 4RTP VAL A 15 ? UNP H0Q7C9 ? ? 'expression tag' -5 15 1 4RTP PRO A 16 ? UNP H0Q7C9 ? ? 'expression tag' -4 16 1 4RTP ARG A 17 ? UNP H0Q7C9 ? ? 'expression tag' -3 17 1 4RTP GLY A 18 ? UNP H0Q7C9 ? ? 'expression tag' -2 18 1 4RTP SER A 19 ? UNP H0Q7C9 ? ? 'expression tag' -1 19 1 4RTP HIS A 20 ? UNP H0Q7C9 ? ? 'expression tag' 0 20 1 4RTP SER A 195 ? UNP H0Q7C9 ALA 175 'SEE REMARK 999' 175 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RTP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details '20% PEG200, 100mM KCl, 10mM MgSO4, 100mM HEPES buffer, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2006-12-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 4RTP _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 34.8 _reflns.d_resolution_high 2.39 _reflns.number_obs 13573 _reflns.number_all 13573 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.3 _reflns.B_iso_Wilson_estimate 50.0 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.39 _reflns_shell.d_res_low 2.48 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.311 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.5 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1312 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RTP _refine.ls_number_reflns_obs 13526 _refine.ls_number_reflns_all 13526 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.759 _refine.ls_d_res_high 2.390 _refine.ls_percent_reflns_obs 99.36 _refine.ls_R_factor_obs 0.2182 _refine.ls_R_factor_R_work 0.2165 _refine.ls_R_factor_R_free 0.2486 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 684 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entry 2G1P' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.pdbx_overall_phase_error 25.20 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1936 _refine_hist.pdbx_number_atoms_nucleic_acid 445 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 2433 _refine_hist.d_res_high 2.390 _refine_hist.d_res_low 34.759 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.002 ? ? 2523 ? 'X-RAY DIFFRACTION' f_angle_d 0.545 ? ? 3528 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 18.040 ? ? 920 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.024 ? ? 382 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 380 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3900 2.5745 2530 0.2551 100.00 0.3229 . . 128 . . . . 'X-RAY DIFFRACTION' . 2.5745 2.8335 2512 0.2742 100.00 0.2791 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.8335 3.2432 2536 0.2506 100.00 0.3016 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.2432 4.0851 2590 0.1996 100.00 0.2420 . . 122 . . . . 'X-RAY DIFFRACTION' . 4.0851 34.7631 2674 0.1981 98.00 0.2175 . . 146 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4RTP _struct.title 'Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and with DNA Containing Proximal Pap Regulon Sequence' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RTP _struct_keywords.pdbx_keywords Transferase/DNA _struct_keywords.text ;DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL VIRULENCE, methylation-independent transcriptional repressor, Transferase-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 37 ? LEU A 45 ? LEU A 17 LEU A 25 1 ? 9 HELX_P HELX_P2 2 GLY A 59 ? ASN A 64 ? GLY A 39 ASN A 44 1 ? 6 HELX_P HELX_P3 3 ASN A 76 ? ARG A 89 ? ASN A 56 ARG A 69 1 ? 14 HELX_P HELX_P4 4 ARG A 89 ? GLU A 99 ? ARG A 69 GLU A 79 1 ? 11 HELX_P HELX_P5 5 LEU A 100 ? PHE A 101 ? LEU A 80 PHE A 81 5 ? 2 HELX_P HELX_P6 6 VAL A 102 ? ASN A 106 ? VAL A 82 ASN A 86 5 ? 5 HELX_P HELX_P7 7 CYS A 107 ? SER A 121 ? CYS A 87 SER A 101 1 ? 15 HELX_P HELX_P8 8 ASP A 123 ? GLY A 138 ? ASP A 103 GLY A 118 1 ? 16 HELX_P HELX_P9 9 TYR A 139 ? LEU A 142 ? TYR A 119 LEU A 122 5 ? 4 HELX_P HELX_P10 10 PRO A 164 ? ALA A 175 ? PRO A 144 ALA A 155 1 ? 12 HELX_P HELX_P11 11 SER A 184 ? ALA A 190 ? SER A 164 ALA A 170 1 ? 7 HELX_P HELX_P12 12 THR A 222 ? ARG A 239 ? THR A 202 ARG A 219 1 ? 18 HELX_P HELX_P13 13 THR A 250 ? TYR A 257 ? THR A 230 TYR A 237 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 11 N1 ? ? F DT 2 G DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 11 N6 ? ? F DT 2 G DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 10 N1 ? ? F DT 3 G DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 10 N6 ? ? F DT 3 G DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? F DA 4 G DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? F DA 4 G DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? F DA 5 G DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? F DA 5 G DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 7 N3 ? ? F DA 6 G DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 7 O4 ? ? F DA 6 G DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? F DG 7 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? F DG 7 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? F DG 7 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? F DA 8 G DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? F DA 8 G DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? F DT 9 G DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? F DT 9 G DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? F DC 10 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? F DC 10 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? F DC 10 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? F DG 11 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? F DG 11 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? F DG 11 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 178 ? CYS A 182 ? ALA A 158 CYS A 162 A 2 ARG A 69 ? ASP A 74 ? ARG A 49 ASP A 54 A 3 CYS A 50 ? GLU A 53 ? CYS A 30 GLU A 33 A 4 SER A 196 ? CYS A 200 ? SER A 176 CYS A 180 A 5 VAL A 243 ? HIS A 248 ? VAL A 223 HIS A 228 A 6 GLU A 283 ? TYR A 288 ? GLU A 263 TYR A 268 A 7 LYS A 261 ? VAL A 265 ? LYS A 241 VAL A 245 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 179 ? O PHE A 159 N LEU A 72 ? N LEU A 52 A 2 3 O ILE A 71 ? O ILE A 51 N LEU A 51 ? N LEU A 31 A 3 4 N VAL A 52 ? N VAL A 32 O VAL A 197 ? O VAL A 177 A 4 5 N CYS A 200 ? N CYS A 180 O LEU A 244 ? O LEU A 224 A 5 6 N ASN A 247 ? N ASN A 227 O LEU A 284 ? O LEU A 264 A 6 7 O LEU A 287 ? O LEU A 267 N LYS A 261 ? N LYS A 241 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SAM _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE SAM A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 TRP A 30 ? TRP A 10 . ? 1_555 ? 2 AC1 15 ALA A 31 ? ALA A 11 . ? 1_555 ? 3 AC1 15 GLY A 32 ? GLY A 12 . ? 1_555 ? 4 AC1 15 PHE A 55 ? PHE A 35 . ? 1_555 ? 5 AC1 15 VAL A 56 ? VAL A 36 . ? 1_555 ? 6 AC1 15 GLY A 57 ? GLY A 37 . ? 1_555 ? 7 AC1 15 ALA A 58 ? ALA A 38 . ? 1_555 ? 8 AC1 15 SER A 60 ? SER A 40 . ? 1_555 ? 9 AC1 15 ASP A 74 ? ASP A 54 . ? 1_555 ? 10 AC1 15 ILE A 75 ? ILE A 55 . ? 1_555 ? 11 AC1 15 SER A 184 ? SER A 164 . ? 1_555 ? 12 AC1 15 TYR A 185 ? TYR A 165 . ? 1_555 ? 13 AC1 15 ASP A 201 ? ASP A 181 . ? 1_555 ? 14 AC1 15 PHE A 221 ? PHE A 201 . ? 1_555 ? 15 AC1 15 GLN A 225 ? GLN A 205 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RTP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RTP _atom_sites.fract_transf_matrix[1][1] 0.027920 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015817 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006940 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 LYS 22 2 ? ? ? A . n A 1 23 LYS 23 3 3 LYS LYS A . n A 1 24 ASN 24 4 4 ASN ASN A . n A 1 25 ARG 25 5 5 ARG ARG A . n A 1 26 ALA 26 6 6 ALA ALA A . n A 1 27 PHE 27 7 7 PHE PHE A . n A 1 28 LEU 28 8 8 LEU LEU A . n A 1 29 LYS 29 9 9 LYS LYS A . n A 1 30 TRP 30 10 10 TRP TRP A . n A 1 31 ALA 31 11 11 ALA ALA A . n A 1 32 GLY 32 12 12 GLY GLY A . n A 1 33 GLY 33 13 13 GLY GLY A . n A 1 34 LYS 34 14 14 LYS LYS A . n A 1 35 TYR 35 15 15 TYR TYR A . n A 1 36 PRO 36 16 16 PRO PRO A . n A 1 37 LEU 37 17 17 LEU LEU A . n A 1 38 LEU 38 18 18 LEU LEU A . n A 1 39 ASP 39 19 19 ASP ASP A . n A 1 40 ASP 40 20 20 ASP ASP A . n A 1 41 ILE 41 21 21 ILE ILE A . n A 1 42 LYS 42 22 22 LYS LYS A . n A 1 43 ARG 43 23 23 ARG ARG A . n A 1 44 HIS 44 24 24 HIS HIS A . n A 1 45 LEU 45 25 25 LEU LEU A . n A 1 46 PRO 46 26 26 PRO PRO A . n A 1 47 LYS 47 27 27 LYS LYS A . n A 1 48 GLY 48 28 28 GLY GLY A . n A 1 49 GLU 49 29 29 GLU GLU A . n A 1 50 CYS 50 30 30 CYS CYS A . n A 1 51 LEU 51 31 31 LEU LEU A . n A 1 52 VAL 52 32 32 VAL VAL A . n A 1 53 GLU 53 33 33 GLU GLU A . n A 1 54 PRO 54 34 34 PRO PRO A . n A 1 55 PHE 55 35 35 PHE PHE A . n A 1 56 VAL 56 36 36 VAL VAL A . n A 1 57 GLY 57 37 37 GLY GLY A . n A 1 58 ALA 58 38 38 ALA ALA A . n A 1 59 GLY 59 39 39 GLY GLY A . n A 1 60 SER 60 40 40 SER SER A . n A 1 61 VAL 61 41 41 VAL VAL A . n A 1 62 PHE 62 42 42 PHE PHE A . n A 1 63 LEU 63 43 43 LEU LEU A . n A 1 64 ASN 64 44 44 ASN ASN A . n A 1 65 THR 65 45 45 THR THR A . n A 1 66 ASP 66 46 46 ASP ASP A . n A 1 67 PHE 67 47 47 PHE PHE A . n A 1 68 SER 68 48 48 SER SER A . n A 1 69 ARG 69 49 49 ARG ARG A . n A 1 70 TYR 70 50 50 TYR TYR A . n A 1 71 ILE 71 51 51 ILE ILE A . n A 1 72 LEU 72 52 52 LEU LEU A . n A 1 73 ALA 73 53 53 ALA ALA A . n A 1 74 ASP 74 54 54 ASP ASP A . n A 1 75 ILE 75 55 55 ILE ILE A . n A 1 76 ASN 76 56 56 ASN ASN A . n A 1 77 SER 77 57 57 SER SER A . n A 1 78 ASP 78 58 58 ASP ASP A . n A 1 79 LEU 79 59 59 LEU LEU A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 SER 81 61 61 SER SER A . n A 1 82 LEU 82 62 62 LEU LEU A . n A 1 83 TYR 83 63 63 TYR TYR A . n A 1 84 ASN 84 64 64 ASN ASN A . n A 1 85 ILE 85 65 65 ILE ILE A . n A 1 86 VAL 86 66 66 VAL VAL A . n A 1 87 LYS 87 67 67 LYS LYS A . n A 1 88 MET 88 68 68 MET MET A . n A 1 89 ARG 89 69 69 ARG ARG A . n A 1 90 THR 90 70 70 THR THR A . n A 1 91 ASP 91 71 71 ASP ASP A . n A 1 92 GLU 92 72 72 GLU GLU A . n A 1 93 TYR 93 73 73 TYR TYR A . n A 1 94 VAL 94 74 74 VAL VAL A . n A 1 95 GLN 95 75 75 GLN GLN A . n A 1 96 ALA 96 76 76 ALA ALA A . n A 1 97 ALA 97 77 77 ALA ALA A . n A 1 98 ARG 98 78 78 ARG ARG A . n A 1 99 GLU 99 79 79 GLU GLU A . n A 1 100 LEU 100 80 80 LEU LEU A . n A 1 101 PHE 101 81 81 PHE PHE A . n A 1 102 VAL 102 82 82 VAL VAL A . n A 1 103 PRO 103 83 83 PRO PRO A . n A 1 104 GLU 104 84 84 GLU GLU A . n A 1 105 THR 105 85 85 THR THR A . n A 1 106 ASN 106 86 86 ASN ASN A . n A 1 107 CYS 107 87 87 CYS CYS A . n A 1 108 ALA 108 88 88 ALA ALA A . n A 1 109 GLU 109 89 89 GLU GLU A . n A 1 110 VAL 110 90 90 VAL VAL A . n A 1 111 TYR 111 91 91 TYR TYR A . n A 1 112 TYR 112 92 92 TYR TYR A . n A 1 113 GLN 113 93 93 GLN GLN A . n A 1 114 PHE 114 94 94 PHE PHE A . n A 1 115 ARG 115 95 95 ARG ARG A . n A 1 116 GLU 116 96 96 GLU GLU A . n A 1 117 GLU 117 97 97 GLU GLU A . n A 1 118 PHE 118 98 98 PHE PHE A . n A 1 119 ASN 119 99 99 ASN ASN A . n A 1 120 LYS 120 100 100 LYS LYS A . n A 1 121 SER 121 101 101 SER SER A . n A 1 122 GLN 122 102 102 GLN GLN A . n A 1 123 ASP 123 103 103 ASP ASP A . n A 1 124 PRO 124 104 104 PRO PRO A . n A 1 125 PHE 125 105 105 PHE PHE A . n A 1 126 ARG 126 106 106 ARG ARG A . n A 1 127 ARG 127 107 107 ARG ARG A . n A 1 128 ALA 128 108 108 ALA ALA A . n A 1 129 VAL 129 109 109 VAL VAL A . n A 1 130 LEU 130 110 110 LEU LEU A . n A 1 131 PHE 131 111 111 PHE PHE A . n A 1 132 LEU 132 112 112 LEU LEU A . n A 1 133 TYR 133 113 113 TYR TYR A . n A 1 134 LEU 134 114 114 LEU LEU A . n A 1 135 ASN 135 115 115 ASN ASN A . n A 1 136 ARG 136 116 116 ARG ARG A . n A 1 137 TYR 137 117 117 TYR TYR A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 TYR 139 119 119 TYR TYR A . n A 1 140 ASN 140 120 120 ASN ASN A . n A 1 141 GLY 141 121 121 GLY GLY A . n A 1 142 LEU 142 122 122 LEU LEU A . n A 1 143 CYS 143 123 123 CYS CYS A . n A 1 144 ARG 144 124 124 ARG ARG A . n A 1 145 TYR 145 125 125 TYR TYR A . n A 1 146 ASN 146 126 126 ASN ASN A . n A 1 147 LEU 147 127 127 LEU LEU A . n A 1 148 ARG 148 128 128 ARG ARG A . n A 1 149 GLY 149 129 129 GLY GLY A . n A 1 150 GLU 150 130 130 GLU GLU A . n A 1 151 PHE 151 131 131 PHE PHE A . n A 1 152 ASN 152 132 132 ASN ASN A . n A 1 153 VAL 153 133 133 VAL VAL A . n A 1 154 PRO 154 134 134 PRO PRO A . n A 1 155 PHE 155 135 135 PHE PHE A . n A 1 156 GLY 156 136 136 GLY GLY A . n A 1 157 ARG 157 137 137 ARG ARG A . n A 1 158 TYR 158 138 138 TYR TYR A . n A 1 159 LYS 159 139 139 LYS LYS A . n A 1 160 LYS 160 140 140 LYS LYS A . n A 1 161 PRO 161 141 141 PRO PRO A . n A 1 162 TYR 162 142 142 TYR TYR A . n A 1 163 PHE 163 143 143 PHE PHE A . n A 1 164 PRO 164 144 144 PRO PRO A . n A 1 165 GLU 165 145 145 GLU GLU A . n A 1 166 ALA 166 146 146 ALA ALA A . n A 1 167 GLU 167 147 147 GLU GLU A . n A 1 168 LEU 168 148 148 LEU LEU A . n A 1 169 TYR 169 149 149 TYR TYR A . n A 1 170 HIS 170 150 150 HIS HIS A . n A 1 171 PHE 171 151 151 PHE PHE A . n A 1 172 ALA 172 152 152 ALA ALA A . n A 1 173 GLU 173 153 153 GLU GLU A . n A 1 174 LYS 174 154 154 LYS LYS A . n A 1 175 ALA 175 155 155 ALA ALA A . n A 1 176 GLN 176 156 156 GLN GLN A . n A 1 177 ASN 177 157 157 ASN ASN A . n A 1 178 ALA 178 158 158 ALA ALA A . n A 1 179 PHE 179 159 159 PHE PHE A . n A 1 180 PHE 180 160 160 PHE PHE A . n A 1 181 TYR 181 161 161 TYR TYR A . n A 1 182 CYS 182 162 162 CYS CYS A . n A 1 183 GLU 183 163 163 GLU GLU A . n A 1 184 SER 184 164 164 SER SER A . n A 1 185 TYR 185 165 165 TYR TYR A . n A 1 186 ALA 186 166 166 ALA ALA A . n A 1 187 ASP 187 167 167 ASP ASP A . n A 1 188 SER 188 168 168 SER SER A . n A 1 189 MET 189 169 169 MET MET A . n A 1 190 ALA 190 170 170 ALA ALA A . n A 1 191 ARG 191 171 171 ARG ARG A . n A 1 192 ALA 192 172 172 ALA ALA A . n A 1 193 ASP 193 173 173 ASP ASP A . n A 1 194 ASP 194 174 174 ASP ASP A . n A 1 195 SER 195 175 175 SER SER A . n A 1 196 SER 196 176 176 SER SER A . n A 1 197 VAL 197 177 177 VAL VAL A . n A 1 198 VAL 198 178 178 VAL VAL A . n A 1 199 TYR 199 179 179 TYR TYR A . n A 1 200 CYS 200 180 180 CYS CYS A . n A 1 201 ASP 201 181 181 ASP ASP A . n A 1 202 PRO 202 182 182 PRO PRO A . n A 1 203 PRO 203 183 183 PRO PRO A . n A 1 204 TYR 204 184 184 TYR TYR A . n A 1 205 ALA 205 185 185 ALA ALA A . n A 1 206 PRO 206 186 186 PRO PRO A . n A 1 207 LEU 207 187 187 LEU LEU A . n A 1 208 SER 208 188 188 SER SER A . n A 1 209 ALA 209 189 ? ? ? A . n A 1 210 THR 210 190 ? ? ? A . n A 1 211 ALA 211 191 ? ? ? A . n A 1 212 ASN 212 192 ? ? ? A . n A 1 213 PHE 213 193 ? ? ? A . n A 1 214 THR 214 194 ? ? ? A . n A 1 215 ALA 215 195 ? ? ? A . n A 1 216 TYR 216 196 ? ? ? A . n A 1 217 HIS 217 197 ? ? ? A . n A 1 218 THR 218 198 ? ? ? A . n A 1 219 ASN 219 199 ? ? ? A . n A 1 220 SER 220 200 200 SER SER A . n A 1 221 PHE 221 201 201 PHE PHE A . n A 1 222 THR 222 202 202 THR THR A . n A 1 223 LEU 223 203 203 LEU LEU A . n A 1 224 GLU 224 204 204 GLU GLU A . n A 1 225 GLN 225 205 205 GLN GLN A . n A 1 226 GLN 226 206 206 GLN GLN A . n A 1 227 ALA 227 207 207 ALA ALA A . n A 1 228 HIS 228 208 208 HIS HIS A . n A 1 229 LEU 229 209 209 LEU LEU A . n A 1 230 ALA 230 210 210 ALA ALA A . n A 1 231 GLU 231 211 211 GLU GLU A . n A 1 232 ILE 232 212 212 ILE ILE A . n A 1 233 ALA 233 213 213 ALA ALA A . n A 1 234 GLU 234 214 214 GLU GLU A . n A 1 235 GLY 235 215 215 GLY GLY A . n A 1 236 LEU 236 216 216 LEU LEU A . n A 1 237 VAL 237 217 217 VAL VAL A . n A 1 238 GLU 238 218 218 GLU GLU A . n A 1 239 ARG 239 219 219 ARG ARG A . n A 1 240 HIS 240 220 220 HIS HIS A . n A 1 241 ILE 241 221 221 ILE ILE A . n A 1 242 PRO 242 222 222 PRO PRO A . n A 1 243 VAL 243 223 223 VAL VAL A . n A 1 244 LEU 244 224 224 LEU LEU A . n A 1 245 ILE 245 225 225 ILE ILE A . n A 1 246 SER 246 226 226 SER SER A . n A 1 247 ASN 247 227 227 ASN ASN A . n A 1 248 HIS 248 228 228 HIS HIS A . n A 1 249 ASP 249 229 229 ASP ASP A . n A 1 250 THR 250 230 230 THR THR A . n A 1 251 MET 251 231 231 MET MET A . n A 1 252 LEU 252 232 232 LEU LEU A . n A 1 253 THR 253 233 233 THR THR A . n A 1 254 ARG 254 234 234 ARG ARG A . n A 1 255 GLU 255 235 235 GLU GLU A . n A 1 256 TRP 256 236 236 TRP TRP A . n A 1 257 TYR 257 237 237 TYR TYR A . n A 1 258 GLN 258 238 238 GLN GLN A . n A 1 259 ARG 259 239 239 ARG ARG A . n A 1 260 ALA 260 240 240 ALA ALA A . n A 1 261 LYS 261 241 241 LYS LYS A . n A 1 262 LEU 262 242 242 LEU LEU A . n A 1 263 HIS 263 243 243 HIS HIS A . n A 1 264 VAL 264 244 244 VAL VAL A . n A 1 265 VAL 265 245 245 VAL VAL A . n A 1 266 LYS 266 246 246 LYS LYS A . n A 1 267 VAL 267 247 247 VAL VAL A . n A 1 268 ARG 268 248 ? ? ? A . n A 1 269 ARG 269 249 ? ? ? A . n A 1 270 SER 270 250 ? ? ? A . n A 1 271 ILE 271 251 ? ? ? A . n A 1 272 SER 272 252 ? ? ? A . n A 1 273 SER 273 253 ? ? ? A . n A 1 274 ASN 274 254 ? ? ? A . n A 1 275 GLY 275 255 ? ? ? A . n A 1 276 GLY 276 256 ? ? ? A . n A 1 277 THR 277 257 ? ? ? A . n A 1 278 ARG 278 258 ? ? ? A . n A 1 279 LYS 279 259 259 LYS LYS A . n A 1 280 LYS 280 260 260 LYS LYS A . n A 1 281 VAL 281 261 261 VAL VAL A . n A 1 282 ASP 282 262 262 ASP ASP A . n A 1 283 GLU 283 263 263 GLU GLU A . n A 1 284 LEU 284 264 264 LEU LEU A . n A 1 285 LEU 285 265 265 LEU LEU A . n A 1 286 ALA 286 266 266 ALA ALA A . n A 1 287 LEU 287 267 267 LEU LEU A . n A 1 288 TYR 288 268 268 TYR TYR A . n A 1 289 LYS 289 269 269 LYS LYS A . n A 1 290 PRO 290 270 270 PRO PRO A . n A 1 291 GLY 291 271 ? ? ? A . n A 1 292 VAL 292 272 ? ? ? A . n A 1 293 VAL 293 273 ? ? ? A . n A 1 294 SER 294 274 ? ? ? A . n A 1 295 PRO 295 275 ? ? ? A . n A 1 296 ALA 296 276 ? ? ? A . n A 1 297 LYS 297 277 ? ? ? A . n A 1 298 LYS 298 278 ? ? ? A . n B 2 1 DT 1 1 1 DT DT F . n B 2 2 DT 2 2 2 DT DT F . n B 2 3 DT 3 3 3 DT DT F . n B 2 4 DA 4 4 4 DA DA F . n B 2 5 DA 5 5 5 DA DA F . n B 2 6 DA 6 6 6 DA DA F . n B 2 7 DG 7 7 7 DG DG F . n B 2 8 DA 8 8 8 DA DA F . n B 2 9 DT 9 9 9 DT DT F . n B 2 10 DC 10 10 10 DC DC F . n B 2 11 DG 11 11 11 DG DG F . n C 3 1 DA 1 1 1 DA DA G . n C 3 2 DC 2 2 2 DC DC G . n C 3 3 DG 3 3 3 DG DG G . n C 3 4 DA 4 4 4 DA DA G . n C 3 5 DT 5 5 5 DT DT G . n C 3 6 DC 6 6 6 DC DC G . n C 3 7 DT 7 7 7 DT DT G . n C 3 8 DT 8 8 8 DT DT G . n C 3 9 DT 9 9 9 DT DT G . n C 3 10 DA 10 10 10 DA DA G . n C 3 11 DA 11 11 11 DA DA G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAM 1 301 301 SAM SAM A . E 5 HOH 1 401 1 HOH HOH A . E 5 HOH 2 402 2 HOH HOH A . E 5 HOH 3 403 3 HOH HOH A . E 5 HOH 4 404 4 HOH HOH A . E 5 HOH 5 405 5 HOH HOH A . E 5 HOH 6 406 6 HOH HOH A . E 5 HOH 7 407 7 HOH HOH A . E 5 HOH 8 408 8 HOH HOH A . E 5 HOH 9 409 9 HOH HOH A . E 5 HOH 10 410 10 HOH HOH A . E 5 HOH 11 411 11 HOH HOH A . E 5 HOH 12 412 12 HOH HOH A . E 5 HOH 13 413 13 HOH HOH A . E 5 HOH 14 414 14 HOH HOH A . E 5 HOH 15 415 15 HOH HOH A . E 5 HOH 16 416 16 HOH HOH A . E 5 HOH 17 417 18 HOH HOH A . E 5 HOH 18 418 19 HOH HOH A . E 5 HOH 19 419 20 HOH HOH A . E 5 HOH 20 420 23 HOH HOH A . E 5 HOH 21 421 24 HOH HOH A . E 5 HOH 22 422 26 HOH HOH A . E 5 HOH 23 423 27 HOH HOH A . F 5 HOH 1 101 21 HOH HOH F . F 5 HOH 2 102 25 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-15 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2015-05-20 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -13.2432 3.2239 91.8708 0.5254 0.6007 0.6244 0.0367 -0.0704 0.0617 4.0195 1.6041 2.9533 2.4135 3.4785 2.1766 -0.3338 0.1817 0.1285 0.9983 0.1085 0.9918 -0.3290 0.3062 -0.0146 'X-RAY DIFFRACTION' 2 ? refined -9.3548 -7.3211 94.4852 0.4408 0.3578 0.6142 -0.0446 -0.1733 0.0590 3.4582 5.0288 4.6851 -1.1216 -0.7280 0.8093 0.2701 0.0494 -0.2861 0.2842 -0.8442 0.9823 -0.5848 0.4505 -0.6989 'X-RAY DIFFRACTION' 3 ? refined -10.2912 10.2795 111.1808 0.3948 0.5854 0.4155 0.0805 0.0728 -0.0075 6.4805 6.2796 6.7469 2.5017 -0.6214 -1.2493 0.0058 0.0037 0.1174 -1.1112 0.3626 0.8017 1.5384 -0.2368 -0.7624 'X-RAY DIFFRACTION' 4 ? refined -0.2557 12.2130 104.0441 0.2453 0.2480 0.3247 0.0386 -0.0251 -0.0394 6.6091 5.5004 5.5449 0.0377 -2.4241 -1.8643 -0.0358 0.1250 -0.0911 -0.2346 0.4558 -0.1538 0.4193 -0.3227 0.1338 'X-RAY DIFFRACTION' 5 ? refined -3.2363 14.5031 99.6244 0.3993 0.2676 0.2601 0.0641 -0.0423 0.0094 4.9641 6.0121 4.4530 1.0199 -1.6531 -1.0985 -0.0804 0.2287 -0.2134 -0.1527 0.6455 0.0642 0.3011 -0.5269 -0.3012 'X-RAY DIFFRACTION' 6 ? refined -11.9402 -5.3583 103.0917 0.3835 0.4925 0.5718 -0.1070 -0.0557 0.1245 6.8441 9.0623 4.6974 -3.1631 0.5412 2.2214 0.0545 -0.0260 -0.0338 -0.6170 -1.3862 1.5877 0.4890 0.6492 -0.6220 'X-RAY DIFFRACTION' 7 ? refined -0.9195 -9.9871 83.4524 0.7270 0.6336 0.5065 0.1816 -0.0858 -0.1458 5.1120 2.6822 4.9134 -1.5352 0.6494 1.1736 0.3920 -0.3353 -0.1305 0.8200 -0.6994 0.2002 -0.7492 0.8527 0.4293 'X-RAY DIFFRACTION' 8 ? refined -5.4756 -6.2965 71.8048 1.3076 1.2669 0.5144 0.4899 -0.1885 -0.2006 1.0218 2.0059 1.8547 -0.0865 -1.2764 0.9003 0.3326 -0.3748 0.0887 0.6635 -0.2376 0.5412 -1.2095 0.9107 -0.2842 'X-RAY DIFFRACTION' 9 ? refined -10.0183 -5.2132 75.5983 0.7836 0.9385 0.7124 0.1049 -0.3123 -0.1703 5.4335 9.0025 2.6798 -3.9621 -0.3654 0.8989 0.6754 -0.6363 0.0830 0.8155 -0.0853 -0.6186 1.0053 0.4369 -0.2058 'X-RAY DIFFRACTION' 10 ? refined 19.8318 18.7072 85.9639 0.4738 0.8174 0.7701 -0.0473 0.0852 0.1900 2.4968 2.3336 2.6173 0.2524 -1.9876 -0.5418 -0.4225 0.0259 0.3674 1.2738 0.7669 -0.3663 -0.5194 0.0627 0.0430 'X-RAY DIFFRACTION' 11 ? refined 17.0019 18.5555 86.1399 0.4834 0.7638 0.7594 -0.0989 0.0752 0.0774 2.2431 4.7734 4.2346 -2.8375 0.2681 -1.2516 -0.0492 0.1145 0.0914 0.7397 0.9331 -0.6654 -0.6958 -0.0034 0.0502 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 17 '( CHAIN A AND RESID 3:17 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 18 A 68 '( CHAIN A AND RESID 18:68 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 69 A 87 '( CHAIN A AND RESID 69:87 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 88 A 126 '( CHAIN A AND RESID 88:126 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 127 A 144 '( CHAIN A AND RESID 127:144 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 145 A 162 '( CHAIN A AND RESID 145:162 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 163 A 228 '( CHAIN A AND RESID 163:228 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 229 A 245 '( CHAIN A AND RESID 229:245 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 246 A 270 '( CHAIN A AND RESID 246:270 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 F 1 F 11 '( CHAIN F AND RESID 1:11 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 G 1 G 11 '( CHAIN G AND RESID 1:11 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SERGUI 'data collection' . ? 1 GLRF phasing . ? 2 PHENIX refinement '(phenix.refine: 1.9_1692)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4RTP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA BECAUSE OF EXTRA DENSITY.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 173 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -127.00 _pdbx_validate_torsion.psi -169.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 14 ? CG ? A LYS 34 CG 2 1 Y 1 A LYS 14 ? CD ? A LYS 34 CD 3 1 Y 1 A LYS 14 ? CE ? A LYS 34 CE 4 1 Y 1 A LYS 14 ? NZ ? A LYS 34 NZ 5 1 Y 1 A ASP 20 ? CG ? A ASP 40 CG 6 1 Y 1 A ASP 20 ? OD1 ? A ASP 40 OD1 7 1 Y 1 A ASP 20 ? OD2 ? A ASP 40 OD2 8 1 Y 1 A ARG 23 ? CG ? A ARG 43 CG 9 1 Y 1 A ARG 23 ? CD ? A ARG 43 CD 10 1 Y 1 A ARG 23 ? NE ? A ARG 43 NE 11 1 Y 1 A ARG 23 ? CZ ? A ARG 43 CZ 12 1 Y 1 A ARG 23 ? NH1 ? A ARG 43 NH1 13 1 Y 1 A ARG 23 ? NH2 ? A ARG 43 NH2 14 1 Y 1 A LYS 27 ? CG ? A LYS 47 CG 15 1 Y 1 A LYS 27 ? CD ? A LYS 47 CD 16 1 Y 1 A LYS 27 ? CE ? A LYS 47 CE 17 1 Y 1 A LYS 27 ? NZ ? A LYS 47 NZ 18 1 Y 1 A GLU 29 ? CG ? A GLU 49 CG 19 1 Y 1 A GLU 29 ? CD ? A GLU 49 CD 20 1 Y 1 A GLU 29 ? OE1 ? A GLU 49 OE1 21 1 Y 1 A GLU 29 ? OE2 ? A GLU 49 OE2 22 1 Y 1 A GLN 75 ? CG ? A GLN 95 CG 23 1 Y 1 A GLN 75 ? CD ? A GLN 95 CD 24 1 Y 1 A GLN 75 ? OE1 ? A GLN 95 OE1 25 1 Y 1 A GLN 75 ? NE2 ? A GLN 95 NE2 26 1 Y 1 A ARG 137 ? CG ? A ARG 157 CG 27 1 Y 1 A ARG 137 ? CD ? A ARG 157 CD 28 1 Y 1 A ARG 137 ? NE ? A ARG 157 NE 29 1 Y 1 A ARG 137 ? CZ ? A ARG 157 CZ 30 1 Y 1 A ARG 137 ? NH1 ? A ARG 157 NH1 31 1 Y 1 A ARG 137 ? NH2 ? A ARG 157 NH2 32 1 Y 1 A LYS 139 ? CG ? A LYS 159 CG 33 1 Y 1 A LYS 139 ? CD ? A LYS 159 CD 34 1 Y 1 A LYS 139 ? CE ? A LYS 159 CE 35 1 Y 1 A LYS 139 ? NZ ? A LYS 159 NZ 36 1 Y 1 A LYS 140 ? CG ? A LYS 160 CG 37 1 Y 1 A LYS 140 ? CD ? A LYS 160 CD 38 1 Y 1 A LYS 140 ? CE ? A LYS 160 CE 39 1 Y 1 A LYS 140 ? NZ ? A LYS 160 NZ 40 1 Y 1 A ASP 174 ? CG ? A ASP 194 CG 41 1 Y 1 A ASP 174 ? OD1 ? A ASP 194 OD1 42 1 Y 1 A ASP 174 ? OD2 ? A ASP 194 OD2 43 1 Y 1 A SER 175 ? OG ? A SER 195 OG 44 1 Y 1 A LEU 187 ? CG ? A LEU 207 CG 45 1 Y 1 A LEU 187 ? CD1 ? A LEU 207 CD1 46 1 Y 1 A LEU 187 ? CD2 ? A LEU 207 CD2 47 1 Y 1 A SER 188 ? OG ? A SER 208 OG 48 1 Y 1 A SER 200 ? OG ? A SER 220 OG 49 1 Y 1 A GLU 218 ? CG ? A GLU 238 CG 50 1 Y 1 A GLU 218 ? CD ? A GLU 238 CD 51 1 Y 1 A GLU 218 ? OE1 ? A GLU 238 OE1 52 1 Y 1 A GLU 218 ? OE2 ? A GLU 238 OE2 53 1 Y 1 A ARG 219 ? CG ? A ARG 239 CG 54 1 Y 1 A ARG 219 ? CD ? A ARG 239 CD 55 1 Y 1 A ARG 219 ? NE ? A ARG 239 NE 56 1 Y 1 A ARG 219 ? CZ ? A ARG 239 CZ 57 1 Y 1 A ARG 219 ? NH1 ? A ARG 239 NH1 58 1 Y 1 A ARG 219 ? NH2 ? A ARG 239 NH2 59 1 Y 1 A MET 231 ? CG ? A MET 251 CG 60 1 Y 1 A MET 231 ? SD ? A MET 251 SD 61 1 Y 1 A MET 231 ? CE ? A MET 251 CE 62 1 Y 1 A GLU 235 ? CG ? A GLU 255 CG 63 1 Y 1 A GLU 235 ? CD ? A GLU 255 CD 64 1 Y 1 A GLU 235 ? OE1 ? A GLU 255 OE1 65 1 Y 1 A GLU 235 ? OE2 ? A GLU 255 OE2 66 1 Y 1 A ARG 239 ? CG ? A ARG 259 CG 67 1 Y 1 A ARG 239 ? CD ? A ARG 259 CD 68 1 Y 1 A ARG 239 ? NE ? A ARG 259 NE 69 1 Y 1 A ARG 239 ? CZ ? A ARG 259 CZ 70 1 Y 1 A ARG 239 ? NH1 ? A ARG 259 NH1 71 1 Y 1 A ARG 239 ? NH2 ? A ARG 259 NH2 72 1 Y 1 A LYS 241 ? CG ? A LYS 261 CG 73 1 Y 1 A LYS 241 ? CD ? A LYS 261 CD 74 1 Y 1 A LYS 241 ? CE ? A LYS 261 CE 75 1 Y 1 A LYS 241 ? NZ ? A LYS 261 NZ 76 1 Y 1 A LYS 246 ? CG ? A LYS 266 CG 77 1 Y 1 A LYS 246 ? CD ? A LYS 266 CD 78 1 Y 1 A LYS 246 ? CE ? A LYS 266 CE 79 1 Y 1 A LYS 246 ? NZ ? A LYS 266 NZ 80 1 Y 1 A VAL 247 ? CG1 ? A VAL 267 CG1 81 1 Y 1 A VAL 247 ? CG2 ? A VAL 267 CG2 82 1 Y 1 A LYS 259 ? CG ? A LYS 279 CG 83 1 Y 1 A LYS 259 ? CD ? A LYS 279 CD 84 1 Y 1 A LYS 259 ? CE ? A LYS 279 CE 85 1 Y 1 A LYS 259 ? NZ ? A LYS 279 NZ 86 1 Y 1 A LYS 260 ? CG ? A LYS 280 CG 87 1 Y 1 A LYS 260 ? CD ? A LYS 280 CD 88 1 Y 1 A LYS 260 ? CE ? A LYS 280 CE 89 1 Y 1 A LYS 260 ? NZ ? A LYS 280 NZ 90 1 Y 1 A ASP 262 ? CG ? A ASP 282 CG 91 1 Y 1 A ASP 262 ? OD1 ? A ASP 282 OD1 92 1 Y 1 A ASP 262 ? OD2 ? A ASP 282 OD2 93 1 Y 1 A LYS 269 ? CG ? A LYS 289 CG 94 1 Y 1 A LYS 269 ? CD ? A LYS 289 CD 95 1 Y 1 A LYS 269 ? CE ? A LYS 289 CE 96 1 Y 1 A LYS 269 ? NZ ? A LYS 289 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A LYS 2 ? A LYS 22 23 1 Y 1 A ALA 189 ? A ALA 209 24 1 Y 1 A THR 190 ? A THR 210 25 1 Y 1 A ALA 191 ? A ALA 211 26 1 Y 1 A ASN 192 ? A ASN 212 27 1 Y 1 A PHE 193 ? A PHE 213 28 1 Y 1 A THR 194 ? A THR 214 29 1 Y 1 A ALA 195 ? A ALA 215 30 1 Y 1 A TYR 196 ? A TYR 216 31 1 Y 1 A HIS 197 ? A HIS 217 32 1 Y 1 A THR 198 ? A THR 218 33 1 Y 1 A ASN 199 ? A ASN 219 34 1 Y 1 A ARG 248 ? A ARG 268 35 1 Y 1 A ARG 249 ? A ARG 269 36 1 Y 1 A SER 250 ? A SER 270 37 1 Y 1 A ILE 251 ? A ILE 271 38 1 Y 1 A SER 252 ? A SER 272 39 1 Y 1 A SER 253 ? A SER 273 40 1 Y 1 A ASN 254 ? A ASN 274 41 1 Y 1 A GLY 255 ? A GLY 275 42 1 Y 1 A GLY 256 ? A GLY 276 43 1 Y 1 A THR 257 ? A THR 277 44 1 Y 1 A ARG 258 ? A ARG 278 45 1 Y 1 A GLY 271 ? A GLY 291 46 1 Y 1 A VAL 272 ? A VAL 292 47 1 Y 1 A VAL 273 ? A VAL 293 48 1 Y 1 A SER 274 ? A SER 294 49 1 Y 1 A PRO 275 ? A PRO 295 50 1 Y 1 A ALA 276 ? A ALA 296 51 1 Y 1 A LYS 277 ? A LYS 297 52 1 Y 1 A LYS 278 ? A LYS 298 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SAM N N N N 433 SAM CA C N S 434 SAM C C N N 435 SAM O O N N 436 SAM OXT O N N 437 SAM CB C N N 438 SAM CG C N N 439 SAM SD S N S 440 SAM CE C N N 441 SAM "C5'" C N N 442 SAM "C4'" C N S 443 SAM "O4'" O N N 444 SAM "C3'" C N S 445 SAM "O3'" O N N 446 SAM "C2'" C N R 447 SAM "O2'" O N N 448 SAM "C1'" C N R 449 SAM N9 N Y N 450 SAM C8 C Y N 451 SAM N7 N Y N 452 SAM C5 C Y N 453 SAM C6 C Y N 454 SAM N6 N N N 455 SAM N1 N Y N 456 SAM C2 C Y N 457 SAM N3 N Y N 458 SAM C4 C Y N 459 SAM HN1 H N N 460 SAM HN2 H N N 461 SAM HA H N N 462 SAM HB1 H N N 463 SAM HB2 H N N 464 SAM HG1 H N N 465 SAM HG2 H N N 466 SAM HE1 H N N 467 SAM HE2 H N N 468 SAM HE3 H N N 469 SAM "H5'1" H N N 470 SAM "H5'2" H N N 471 SAM "H4'" H N N 472 SAM "H3'" H N N 473 SAM "HO3'" H N N 474 SAM "H2'" H N N 475 SAM "HO2'" H N N 476 SAM "H1'" H N N 477 SAM H8 H N N 478 SAM HN61 H N N 479 SAM HN62 H N N 480 SAM H2 H N N 481 SER N N N N 482 SER CA C N S 483 SER C C N N 484 SER O O N N 485 SER CB C N N 486 SER OG O N N 487 SER OXT O N N 488 SER H H N N 489 SER H2 H N N 490 SER HA H N N 491 SER HB2 H N N 492 SER HB3 H N N 493 SER HG H N N 494 SER HXT H N N 495 THR N N N N 496 THR CA C N S 497 THR C C N N 498 THR O O N N 499 THR CB C N R 500 THR OG1 O N N 501 THR CG2 C N N 502 THR OXT O N N 503 THR H H N N 504 THR H2 H N N 505 THR HA H N N 506 THR HB H N N 507 THR HG1 H N N 508 THR HG21 H N N 509 THR HG22 H N N 510 THR HG23 H N N 511 THR HXT H N N 512 TRP N N N N 513 TRP CA C N S 514 TRP C C N N 515 TRP O O N N 516 TRP CB C N N 517 TRP CG C Y N 518 TRP CD1 C Y N 519 TRP CD2 C Y N 520 TRP NE1 N Y N 521 TRP CE2 C Y N 522 TRP CE3 C Y N 523 TRP CZ2 C Y N 524 TRP CZ3 C Y N 525 TRP CH2 C Y N 526 TRP OXT O N N 527 TRP H H N N 528 TRP H2 H N N 529 TRP HA H N N 530 TRP HB2 H N N 531 TRP HB3 H N N 532 TRP HD1 H N N 533 TRP HE1 H N N 534 TRP HE3 H N N 535 TRP HZ2 H N N 536 TRP HZ3 H N N 537 TRP HH2 H N N 538 TRP HXT H N N 539 TYR N N N N 540 TYR CA C N S 541 TYR C C N N 542 TYR O O N N 543 TYR CB C N N 544 TYR CG C Y N 545 TYR CD1 C Y N 546 TYR CD2 C Y N 547 TYR CE1 C Y N 548 TYR CE2 C Y N 549 TYR CZ C Y N 550 TYR OH O N N 551 TYR OXT O N N 552 TYR H H N N 553 TYR H2 H N N 554 TYR HA H N N 555 TYR HB2 H N N 556 TYR HB3 H N N 557 TYR HD1 H N N 558 TYR HD2 H N N 559 TYR HE1 H N N 560 TYR HE2 H N N 561 TYR HH H N N 562 TYR HXT H N N 563 VAL N N N N 564 VAL CA C N S 565 VAL C C N N 566 VAL O O N N 567 VAL CB C N N 568 VAL CG1 C N N 569 VAL CG2 C N N 570 VAL OXT O N N 571 VAL H H N N 572 VAL H2 H N N 573 VAL HA H N N 574 VAL HB H N N 575 VAL HG11 H N N 576 VAL HG12 H N N 577 VAL HG13 H N N 578 VAL HG21 H N N 579 VAL HG22 H N N 580 VAL HG23 H N N 581 VAL HXT H N N 582 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SAM N CA sing N N 426 SAM N HN1 sing N N 427 SAM N HN2 sing N N 428 SAM CA C sing N N 429 SAM CA CB sing N N 430 SAM CA HA sing N N 431 SAM C O doub N N 432 SAM C OXT sing N N 433 SAM CB CG sing N N 434 SAM CB HB1 sing N N 435 SAM CB HB2 sing N N 436 SAM CG SD sing N N 437 SAM CG HG1 sing N N 438 SAM CG HG2 sing N N 439 SAM SD CE sing N N 440 SAM SD "C5'" sing N N 441 SAM CE HE1 sing N N 442 SAM CE HE2 sing N N 443 SAM CE HE3 sing N N 444 SAM "C5'" "C4'" sing N N 445 SAM "C5'" "H5'1" sing N N 446 SAM "C5'" "H5'2" sing N N 447 SAM "C4'" "O4'" sing N N 448 SAM "C4'" "C3'" sing N N 449 SAM "C4'" "H4'" sing N N 450 SAM "O4'" "C1'" sing N N 451 SAM "C3'" "O3'" sing N N 452 SAM "C3'" "C2'" sing N N 453 SAM "C3'" "H3'" sing N N 454 SAM "O3'" "HO3'" sing N N 455 SAM "C2'" "O2'" sing N N 456 SAM "C2'" "C1'" sing N N 457 SAM "C2'" "H2'" sing N N 458 SAM "O2'" "HO2'" sing N N 459 SAM "C1'" N9 sing N N 460 SAM "C1'" "H1'" sing N N 461 SAM N9 C8 sing Y N 462 SAM N9 C4 sing Y N 463 SAM C8 N7 doub Y N 464 SAM C8 H8 sing N N 465 SAM N7 C5 sing Y N 466 SAM C5 C6 sing Y N 467 SAM C5 C4 doub Y N 468 SAM C6 N6 sing N N 469 SAM C6 N1 doub Y N 470 SAM N6 HN61 sing N N 471 SAM N6 HN62 sing N N 472 SAM N1 C2 sing Y N 473 SAM C2 N3 doub Y N 474 SAM C2 H2 sing N N 475 SAM N3 C4 sing Y N 476 SER N CA sing N N 477 SER N H sing N N 478 SER N H2 sing N N 479 SER CA C sing N N 480 SER CA CB sing N N 481 SER CA HA sing N N 482 SER C O doub N N 483 SER C OXT sing N N 484 SER CB OG sing N N 485 SER CB HB2 sing N N 486 SER CB HB3 sing N N 487 SER OG HG sing N N 488 SER OXT HXT sing N N 489 THR N CA sing N N 490 THR N H sing N N 491 THR N H2 sing N N 492 THR CA C sing N N 493 THR CA CB sing N N 494 THR CA HA sing N N 495 THR C O doub N N 496 THR C OXT sing N N 497 THR CB OG1 sing N N 498 THR CB CG2 sing N N 499 THR CB HB sing N N 500 THR OG1 HG1 sing N N 501 THR CG2 HG21 sing N N 502 THR CG2 HG22 sing N N 503 THR CG2 HG23 sing N N 504 THR OXT HXT sing N N 505 TRP N CA sing N N 506 TRP N H sing N N 507 TRP N H2 sing N N 508 TRP CA C sing N N 509 TRP CA CB sing N N 510 TRP CA HA sing N N 511 TRP C O doub N N 512 TRP C OXT sing N N 513 TRP CB CG sing N N 514 TRP CB HB2 sing N N 515 TRP CB HB3 sing N N 516 TRP CG CD1 doub Y N 517 TRP CG CD2 sing Y N 518 TRP CD1 NE1 sing Y N 519 TRP CD1 HD1 sing N N 520 TRP CD2 CE2 doub Y N 521 TRP CD2 CE3 sing Y N 522 TRP NE1 CE2 sing Y N 523 TRP NE1 HE1 sing N N 524 TRP CE2 CZ2 sing Y N 525 TRP CE3 CZ3 doub Y N 526 TRP CE3 HE3 sing N N 527 TRP CZ2 CH2 doub Y N 528 TRP CZ2 HZ2 sing N N 529 TRP CZ3 CH2 sing Y N 530 TRP CZ3 HZ3 sing N N 531 TRP CH2 HH2 sing N N 532 TRP OXT HXT sing N N 533 TYR N CA sing N N 534 TYR N H sing N N 535 TYR N H2 sing N N 536 TYR CA C sing N N 537 TYR CA CB sing N N 538 TYR CA HA sing N N 539 TYR C O doub N N 540 TYR C OXT sing N N 541 TYR CB CG sing N N 542 TYR CB HB2 sing N N 543 TYR CB HB3 sing N N 544 TYR CG CD1 doub Y N 545 TYR CG CD2 sing Y N 546 TYR CD1 CE1 sing Y N 547 TYR CD1 HD1 sing N N 548 TYR CD2 CE2 doub Y N 549 TYR CD2 HD2 sing N N 550 TYR CE1 CZ doub Y N 551 TYR CE1 HE1 sing N N 552 TYR CE2 CZ sing Y N 553 TYR CE2 HE2 sing N N 554 TYR CZ OH sing N N 555 TYR OH HH sing N N 556 TYR OXT HXT sing N N 557 VAL N CA sing N N 558 VAL N H sing N N 559 VAL N H2 sing N N 560 VAL CA C sing N N 561 VAL CA CB sing N N 562 VAL CA HA sing N N 563 VAL C O doub N N 564 VAL C OXT sing N N 565 VAL CB CG1 sing N N 566 VAL CB CG2 sing N N 567 VAL CB HB sing N N 568 VAL CG1 HG11 sing N N 569 VAL CG1 HG12 sing N N 570 VAL CG1 HG13 sing N N 571 VAL CG2 HG21 sing N N 572 VAL CG2 HG22 sing N N 573 VAL CG2 HG23 sing N N 574 VAL OXT HXT sing N N 575 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RTP 'double helix' 4RTP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 11 1_555 -0.502 -0.061 -0.188 -18.619 -17.487 -6.559 1 F_DT2:DA11_G F 2 ? G 11 ? 20 1 1 B DT 3 1_555 C DA 10 1_555 -0.284 0.028 0.132 -6.839 -11.942 8.969 2 F_DT3:DA10_G F 3 ? G 10 ? 20 1 1 B DA 4 1_555 C DT 9 1_555 0.681 0.037 0.120 3.580 -18.441 10.279 3 F_DA4:DT9_G F 4 ? G 9 ? 20 1 1 B DA 5 1_555 C DT 8 1_555 0.128 -0.091 0.388 12.380 -21.152 3.377 4 F_DA5:DT8_G F 5 ? G 8 ? 20 1 1 B DA 6 1_555 C DT 7 1_555 0.310 -0.166 0.313 7.287 -13.926 1.134 5 F_DA6:DT7_G F 6 ? G 7 ? 20 1 1 B DG 7 1_555 C DC 6 1_555 0.014 -0.165 0.268 -1.983 -29.382 1.905 6 F_DG7:DC6_G F 7 ? G 6 ? 19 1 1 B DA 8 1_555 C DT 5 1_555 0.234 -0.030 0.058 -14.164 -10.121 9.847 7 F_DA8:DT5_G F 8 ? G 5 ? 20 1 1 B DT 9 1_555 C DA 4 1_555 -0.328 -0.149 0.626 -13.089 -13.957 9.259 8 F_DT9:DA4_G F 9 ? G 4 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.306 -0.283 -0.040 -0.954 5.682 6.326 9 F_DC10:DG3_G F 10 ? G 3 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.288 -0.193 0.093 10.515 -11.351 5.171 10 F_DG11:DC2_G F 11 ? G 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 11 1_555 B DT 3 1_555 C DA 10 1_555 0.788 0.102 3.123 -2.732 5.394 30.741 -0.775 -1.949 3.017 10.054 5.091 31.315 1 FF_DT2DT3:DA10DA11_GG F 2 ? G 11 ? F 3 ? G 10 ? 1 B DT 3 1_555 C DA 10 1_555 B DA 4 1_555 C DT 9 1_555 0.097 1.177 3.323 2.520 7.322 35.317 0.809 0.219 3.488 11.893 -4.094 36.130 2 FF_DT3DA4:DT9DA10_GG F 3 ? G 10 ? F 4 ? G 9 ? 1 B DA 4 1_555 C DT 9 1_555 B DA 5 1_555 C DT 8 1_555 -0.197 -0.235 2.932 -1.157 6.529 29.117 -1.666 0.169 2.819 12.778 2.264 29.847 3 FF_DA4DA5:DT8DT9_GG F 4 ? G 9 ? F 5 ? G 8 ? 1 B DA 5 1_555 C DT 8 1_555 B DA 6 1_555 C DT 7 1_555 0.347 -0.892 3.321 0.065 -3.950 34.803 -0.871 -0.567 3.399 -6.577 -0.108 35.020 4 FF_DA5DA6:DT7DT8_GG F 5 ? G 8 ? F 6 ? G 7 ? 1 B DA 6 1_555 C DT 7 1_555 B DG 7 1_555 C DC 6 1_555 0.106 -0.876 3.479 -2.429 7.277 35.195 -2.491 -0.530 3.226 11.861 3.959 35.996 5 FF_DA6DG7:DC6DT7_GG F 6 ? G 7 ? F 7 ? G 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DA 8 1_555 C DT 5 1_555 0.078 -0.355 3.574 -0.279 -7.998 37.605 0.561 -0.157 3.572 -12.237 0.428 38.417 6 FF_DG7DA8:DT5DC6_GG F 7 ? G 6 ? F 8 ? G 5 ? 1 B DA 8 1_555 C DT 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.137 -0.732 3.284 -2.203 2.468 30.285 -1.885 -0.177 3.217 4.706 4.200 30.461 7 FF_DA8DT9:DA4DT5_GG F 8 ? G 5 ? F 9 ? G 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 0.893 1.263 3.158 5.234 6.564 35.162 1.091 -0.686 3.424 10.679 -8.514 36.119 8 FF_DT9DC10:DG3DA4_GG F 9 ? G 4 ? F 10 ? G 3 ? 1 B DC 10 1_555 C DG 3 1_555 B DG 11 1_555 C DC 2 1_555 -0.490 0.736 3.062 -2.535 5.363 31.851 0.412 0.449 3.169 9.668 4.571 32.385 9 FF_DC10DG11:DC2DG3_GG F 10 ? G 3 ? F 11 ? G 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 S-ADENOSYLMETHIONINE SAM 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G1P _pdbx_initial_refinement_model.details 'PDB entry 2G1P' #