HEADER PROTEIN BINDING 16-NOV-14 4RTX TITLE CRYSTAL STRUCTURE OF THE SRC TYROSINE KINASE SH3 DOMAIN T96G/Q128R TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH3 DOMAIN (UNP RESIDUE 85-141); COMPND 5 SYNONYM: PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BETA SHANDWICH, SH3 DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 2 20-SEP-23 4RTX 1 REMARK SEQADV LINK REVDAT 1 28-OCT-15 4RTX 0 JRNL AUTH A.CAMARA-ARTIGAS JRNL TITL CRYSTAL STRUCTURE OF THE SRC TYROSINE KINASE SH3 DOMAIN JRNL TITL 2 T96G/Q128R MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 106850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 5416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7435 - 4.0995 0.99 3414 170 0.1675 0.2075 REMARK 3 2 4.0995 - 3.2547 0.97 3300 224 0.1528 0.1770 REMARK 3 3 3.2547 - 2.8435 0.99 3442 138 0.1656 0.1836 REMARK 3 4 2.8435 - 2.5836 0.98 3384 162 0.1692 0.2028 REMARK 3 5 2.5836 - 2.3984 0.99 3394 181 0.1726 0.1948 REMARK 3 6 2.3984 - 2.2571 0.98 3406 167 0.1547 0.2036 REMARK 3 7 2.2571 - 2.1441 0.94 3242 150 0.1654 0.2089 REMARK 3 8 2.1441 - 2.0507 0.99 3422 175 0.1411 0.1565 REMARK 3 9 2.0507 - 1.9718 0.99 3382 202 0.1358 0.1490 REMARK 3 10 1.9718 - 1.9038 0.97 3318 184 0.1809 0.2138 REMARK 3 11 1.9038 - 1.8442 1.00 3409 205 0.1630 0.2069 REMARK 3 12 1.8442 - 1.7915 1.00 3465 165 0.1490 0.1786 REMARK 3 13 1.7915 - 1.7444 1.00 3402 197 0.1510 0.2101 REMARK 3 14 1.7444 - 1.7018 1.00 3403 191 0.1581 0.1956 REMARK 3 15 1.7018 - 1.6631 1.00 3402 137 0.1528 0.2000 REMARK 3 16 1.6631 - 1.6277 1.00 3557 152 0.1608 0.1942 REMARK 3 17 1.6277 - 1.5952 1.00 3420 174 0.1690 0.2229 REMARK 3 18 1.5952 - 1.5651 1.00 3424 181 0.1675 0.2583 REMARK 3 19 1.5651 - 1.5371 1.00 3381 205 0.1647 0.1977 REMARK 3 20 1.5371 - 1.5111 1.00 3499 173 0.1635 0.2130 REMARK 3 21 1.5111 - 1.4867 0.99 3380 201 0.1765 0.2064 REMARK 3 22 1.4867 - 1.4638 0.99 3399 179 0.2126 0.2477 REMARK 3 23 1.4638 - 1.4423 0.98 3364 181 0.2136 0.2704 REMARK 3 24 1.4423 - 1.4220 0.97 3286 184 0.2348 0.3160 REMARK 3 25 1.4220 - 1.4027 0.96 3392 175 0.2392 0.2721 REMARK 3 26 1.4027 - 1.3845 0.97 3286 162 0.2518 0.2604 REMARK 3 27 1.3845 - 1.3672 0.96 3321 177 0.2673 0.2915 REMARK 3 28 1.3672 - 1.3507 0.97 3308 175 0.2847 0.3578 REMARK 3 29 1.3507 - 1.3350 0.96 3286 232 0.2935 0.3455 REMARK 3 30 1.3350 - 1.3200 0.97 3346 217 0.2873 0.3365 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2026 REMARK 3 ANGLE : 1.550 2758 REMARK 3 CHIRALITY : 0.068 282 REMARK 3 PLANARITY : 0.009 348 REMARK 3 DIHEDRAL : 12.357 708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979491 REMARK 200 MONOCHROMATOR : CHANNEL-CUT MONOCHROMATOR AND A REMARK 200 KIRKPATRICK-BAEZ (KB) FOCUSING REMARK 200 SYSTEM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.30 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 39.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JZ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.4M AMMONIUM SULPHATE, REMARK 280 5MM NICL2, 5MM METHYL BETA CYCLODEXTRIN, 5MM GLICINE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.98300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 THR B 114 OG1 CG2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU C 115 CG CD OE1 OE2 REMARK 470 THR D 114 OG1 CG2 REMARK 470 GLU D 115 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -11.60 169.11 REMARK 500 SER B 82 -3.78 -173.98 REMARK 500 SER C 82 -4.18 -172.01 REMARK 500 SER D 82 -10.48 -175.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 81 N REMARK 620 2 SER A 82 N 78.2 REMARK 620 3 HIS A 83 ND1 102.4 167.9 REMARK 620 4 HIS A 83 N 163.1 86.4 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 81 N REMARK 620 2 SER B 82 N 81.5 REMARK 620 3 HIS B 83 ND1 98.6 174.6 REMARK 620 4 HIS B 83 N 164.9 83.5 96.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 81 N REMARK 620 2 SER C 82 N 86.5 REMARK 620 3 HIS C 83 N 171.3 85.5 REMARK 620 4 HIS C 83 ND1 93.5 178.6 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 81 N REMARK 620 2 SER D 82 N 87.1 REMARK 620 3 HIS D 83 N 170.5 84.8 REMARK 620 4 HIS D 83 ND1 94.6 175.9 93.3 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RTU RELATED DB: PDB REMARK 900 RELATED ID: 4RTV RELATED DB: PDB REMARK 900 RELATED ID: 4RTW RELATED DB: PDB REMARK 900 RELATED ID: 4RTY RELATED DB: PDB REMARK 900 RELATED ID: 4RTZ RELATED DB: PDB DBREF 4RTX A 85 141 UNP P00523 SRC_CHICK 85 141 DBREF 4RTX B 85 141 UNP P00523 SRC_CHICK 85 141 DBREF 4RTX C 85 141 UNP P00523 SRC_CHICK 85 141 DBREF 4RTX D 85 141 UNP P00523 SRC_CHICK 85 141 SEQADV 4RTX GLY A 81 UNP P00523 EXPRESSION TAG SEQADV 4RTX SER A 82 UNP P00523 EXPRESSION TAG SEQADV 4RTX HIS A 83 UNP P00523 EXPRESSION TAG SEQADV 4RTX MET A 84 UNP P00523 EXPRESSION TAG SEQADV 4RTX GLY A 96 UNP P00523 THR 96 ENGINEERED MUTATION SEQADV 4RTX ARG A 128 UNP P00523 GLN 128 ENGINEERED MUTATION SEQADV 4RTX GLY B 81 UNP P00523 EXPRESSION TAG SEQADV 4RTX SER B 82 UNP P00523 EXPRESSION TAG SEQADV 4RTX HIS B 83 UNP P00523 EXPRESSION TAG SEQADV 4RTX MET B 84 UNP P00523 EXPRESSION TAG SEQADV 4RTX GLY B 96 UNP P00523 THR 96 ENGINEERED MUTATION SEQADV 4RTX ARG B 128 UNP P00523 GLN 128 ENGINEERED MUTATION SEQADV 4RTX GLY C 81 UNP P00523 EXPRESSION TAG SEQADV 4RTX SER C 82 UNP P00523 EXPRESSION TAG SEQADV 4RTX HIS C 83 UNP P00523 EXPRESSION TAG SEQADV 4RTX MET C 84 UNP P00523 EXPRESSION TAG SEQADV 4RTX GLY C 96 UNP P00523 THR 96 ENGINEERED MUTATION SEQADV 4RTX ARG C 128 UNP P00523 GLN 128 ENGINEERED MUTATION SEQADV 4RTX GLY D 81 UNP P00523 EXPRESSION TAG SEQADV 4RTX SER D 82 UNP P00523 EXPRESSION TAG SEQADV 4RTX HIS D 83 UNP P00523 EXPRESSION TAG SEQADV 4RTX MET D 84 UNP P00523 EXPRESSION TAG SEQADV 4RTX GLY D 96 UNP P00523 THR 96 ENGINEERED MUTATION SEQADV 4RTX ARG D 128 UNP P00523 GLN 128 ENGINEERED MUTATION SEQRES 1 A 61 GLY SER HIS MET THR PHE VAL ALA LEU TYR ASP TYR GLU SEQRES 2 A 61 SER ARG GLY GLU THR ASP LEU SER PHE LYS LYS GLY GLU SEQRES 3 A 61 ARG LEU GLN ILE VAL ASN ASN THR GLU GLY ASP TRP TRP SEQRES 4 A 61 LEU ALA HIS SER LEU THR THR GLY ARG THR GLY TYR ILE SEQRES 5 A 61 PRO SER ASN TYR VAL ALA PRO SER ASP SEQRES 1 B 61 GLY SER HIS MET THR PHE VAL ALA LEU TYR ASP TYR GLU SEQRES 2 B 61 SER ARG GLY GLU THR ASP LEU SER PHE LYS LYS GLY GLU SEQRES 3 B 61 ARG LEU GLN ILE VAL ASN ASN THR GLU GLY ASP TRP TRP SEQRES 4 B 61 LEU ALA HIS SER LEU THR THR GLY ARG THR GLY TYR ILE SEQRES 5 B 61 PRO SER ASN TYR VAL ALA PRO SER ASP SEQRES 1 C 61 GLY SER HIS MET THR PHE VAL ALA LEU TYR ASP TYR GLU SEQRES 2 C 61 SER ARG GLY GLU THR ASP LEU SER PHE LYS LYS GLY GLU SEQRES 3 C 61 ARG LEU GLN ILE VAL ASN ASN THR GLU GLY ASP TRP TRP SEQRES 4 C 61 LEU ALA HIS SER LEU THR THR GLY ARG THR GLY TYR ILE SEQRES 5 C 61 PRO SER ASN TYR VAL ALA PRO SER ASP SEQRES 1 D 61 GLY SER HIS MET THR PHE VAL ALA LEU TYR ASP TYR GLU SEQRES 2 D 61 SER ARG GLY GLU THR ASP LEU SER PHE LYS LYS GLY GLU SEQRES 3 D 61 ARG LEU GLN ILE VAL ASN ASN THR GLU GLY ASP TRP TRP SEQRES 4 D 61 LEU ALA HIS SER LEU THR THR GLY ARG THR GLY TYR ILE SEQRES 5 D 61 PRO SER ASN TYR VAL ALA PRO SER ASP HET NI A 201 1 HET SO4 A 202 5 HET SO4 A 203 5 HET NI B 201 1 HET EPE B 202 32 HET SO4 B 203 5 HET NI C 201 1 HET NI D 201 1 HET EPE D 202 32 HET SO4 D 203 5 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 NI 4(NI 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 9 EPE 2(C8 H18 N2 O4 S) FORMUL 15 HOH *301(H2 O) HELIX 1 1 SER A 134 TYR A 136 5 3 HELIX 2 1 SER B 134 TYR B 136 5 3 HELIX 3 1 SER C 134 TYR C 136 5 3 HELIX 4 1 SER D 134 TYR D 136 5 3 SHEET 1 A 5 THR A 129 PRO A 133 0 SHEET 2 A 5 TRP A 118 HIS A 122 -1 N TRP A 119 O ILE A 132 SHEET 3 A 5 ARG A 107 ILE A 110 -1 N GLN A 109 O HIS A 122 SHEET 4 A 5 MET A 84 ALA A 88 -1 N PHE A 86 O LEU A 108 SHEET 5 A 5 VAL A 137 PRO A 139 -1 O ALA A 138 N VAL A 87 SHEET 1 B 5 THR B 129 PRO B 133 0 SHEET 2 B 5 TRP B 118 SER B 123 -1 N TRP B 119 O ILE B 132 SHEET 3 B 5 ARG B 107 ASN B 112 -1 N GLN B 109 O HIS B 122 SHEET 4 B 5 THR B 85 ALA B 88 -1 N PHE B 86 O LEU B 108 SHEET 5 B 5 VAL B 137 PRO B 139 -1 O ALA B 138 N VAL B 87 SHEET 1 C 5 THR C 129 PRO C 133 0 SHEET 2 C 5 TRP C 118 SER C 123 -1 N ALA C 121 O GLY C 130 SHEET 3 C 5 ARG C 107 ASN C 112 -1 N GLN C 109 O HIS C 122 SHEET 4 C 5 THR C 85 ALA C 88 -1 N PHE C 86 O LEU C 108 SHEET 5 C 5 VAL C 137 PRO C 139 -1 O ALA C 138 N VAL C 87 SHEET 1 D 5 THR D 129 PRO D 133 0 SHEET 2 D 5 TRP D 118 SER D 123 -1 N TRP D 119 O ILE D 132 SHEET 3 D 5 ARG D 107 ASN D 112 -1 N GLN D 109 O HIS D 122 SHEET 4 D 5 THR D 85 ALA D 88 -1 N PHE D 86 O LEU D 108 SHEET 5 D 5 VAL D 137 PRO D 139 -1 O ALA D 138 N VAL D 87 LINK N GLY A 81 NI NI A 201 1555 1555 2.01 LINK N SER A 82 NI NI A 201 1555 1555 1.95 LINK ND1 HIS A 83 NI NI A 201 1555 1555 1.87 LINK N HIS A 83 NI NI A 201 1555 1555 1.93 LINK N GLY B 81 NI NI B 201 1555 1555 1.92 LINK N SER B 82 NI NI B 201 1555 1555 1.87 LINK ND1 HIS B 83 NI NI B 201 1555 1555 1.90 LINK N HIS B 83 NI NI B 201 1555 1555 1.92 LINK N GLY C 81 NI NI C 201 1555 1555 1.91 LINK N SER C 82 NI NI C 201 1555 1555 1.83 LINK N HIS C 83 NI NI C 201 1555 1555 1.86 LINK ND1 HIS C 83 NI NI C 201 1555 1555 1.94 LINK N GLY D 81 NI NI D 201 1555 1555 1.95 LINK N SER D 82 NI NI D 201 1555 1555 1.73 LINK N HIS D 83 NI NI D 201 1555 1555 1.93 LINK ND1 HIS D 83 NI NI D 201 1555 1555 1.93 CISPEP 1 THR D 114 GLU D 115 0 -14.93 SITE 1 AC1 3 GLY A 81 SER A 82 HIS A 83 SITE 1 AC2 6 GLU A 106 ARG A 107 THR A 125 HOH A 345 SITE 2 AC2 6 HOH A 366 HOH A 376 SITE 1 AC3 5 ARG A 128 HOH A 346 SER B 101 EPE B 202 SITE 2 AC3 5 HOH B 347 SITE 1 AC4 4 GLY B 81 SER B 82 HIS B 83 MET B 84 SITE 1 AC5 15 ARG A 128 SO4 A 203 SER B 94 GLU B 97 SITE 2 AC5 15 THR B 98 ASP B 99 LEU B 100 SER B 101 SITE 3 AC5 15 LEU B 120 ARG B 128 THR B 129 GLY B 130 SITE 4 AC5 15 HOH B 348 HOH B 368 SO4 D 203 SITE 1 AC6 7 ARG A 128 ARG B 128 HOH B 308 HOH B 316 SITE 2 AC6 7 HOH B 322 HOH B 326 HOH B 337 SITE 1 AC7 4 GLY C 81 SER C 82 HIS C 83 MET C 84 SITE 1 AC8 4 GLY D 81 SER D 82 HIS D 83 MET D 84 SITE 1 AC9 12 HOH B 315 LYS C 103 SER D 94 GLU D 97 SITE 2 AC9 12 THR D 98 ASP D 99 LEU D 100 SER D 101 SITE 3 AC9 12 ARG D 128 THR D 129 HOH D 307 HOH D 328 SITE 1 BC1 6 EPE B 202 ARG C 128 HOH C 351 HIS D 122 SITE 2 BC1 6 LEU D 124 HOH D 305 CRYST1 40.091 49.966 59.845 90.00 95.51 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024943 0.000000 0.002406 0.00000 SCALE2 0.000000 0.020014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016787 0.00000