HEADER TRANSFERASE 26-NOV-14 4RVD TITLE CRYSTAL STRUCTURE OF MTMC IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-MYCAROSE 3-C-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ARGILLACEUS; SOURCE 3 ORGANISM_TAXID: 41951; SOURCE 4 GENE: MTMC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SAM-DEPENDENT C-METHYLTRANSFERASE, 4-KETO-D-OLIVOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.TSODIKOV,C.HOU,J.-M.CHEN,J.ROHR REVDAT 3 20-NOV-24 4RVD 1 REMARK SEQADV LINK REVDAT 2 06-MAY-15 4RVD 1 JRNL REVDAT 1 28-JAN-15 4RVD 0 JRNL AUTH J.M.CHEN,C.HOU,G.WANG,O.V.TSODIKOV,J.ROHR JRNL TITL STRUCTURAL INSIGHT INTO MTMC, A BIFUNCTIONAL JRNL TITL 2 KETOREDUCTASE-METHYLTRANSFERASE INVOLVED IN THE ASSEMBLY OF JRNL TITL 3 THE MITHRAMYCIN TRISACCHARIDE CHAIN. JRNL REF BIOCHEMISTRY V. 54 2481 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25587924 JRNL DOI 10.1021/BI501462G REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3342 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3161 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4547 ; 1.125 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7261 ; 0.751 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 5.669 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;34.275 ;23.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;15.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3766 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 1.615 ; 4.505 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1674 ; 1.611 ; 4.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2089 ; 2.514 ; 6.746 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2090 ; 2.514 ; 6.746 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 1.924 ; 4.791 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1668 ; 1.923 ; 4.791 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2459 ; 3.117 ; 7.093 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3656 ; 4.570 ;36.039 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3645 ; 4.552 ;36.018 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 5.5, 0.2 M AMMONIUM REMARK 280 ACETATE, 16% PEG 4000, 1MM SAM, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 67.38350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.42625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.38350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.27875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.27875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.38350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.42625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 67.38350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.85250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.38350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.85250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.38350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 97.27875 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 32.42625 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.38350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.42625 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 97.27875 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.38350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.38350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.85250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -76.50 -111.55 REMARK 500 SER A 82 -77.91 -100.74 REMARK 500 ASP A 83 114.63 87.17 REMARK 500 ASN A 116 -135.98 62.44 REMARK 500 VAL A 179 -30.19 -138.43 REMARK 500 ALA A 385 54.02 -92.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 110.9 REMARK 620 3 CYS A 56 SG 108.8 103.5 REMARK 620 4 CYS A 59 SG 112.2 111.2 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RV9 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH SAH REMARK 900 RELATED ID: 4RVF RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH TDP REMARK 900 RELATED ID: 4RVG RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH SAM AND TDP REMARK 900 RELATED ID: 4RVH RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH SAH AND SUBSTRATE DBREF 4RVD A 1 420 UNP Q194Q4 Q194Q4_STRAA 1 421 SEQADV 4RVD ARG A 14 UNP Q194Q4 PRO 14 CONFLICT SEQADV 4RVD ARG A 57 UNP Q194Q4 ALA 57 CONFLICT SEQADV 4RVD A UNP Q194Q4 GLY 97 DELETION SEQADV 4RVD CYS A 98 UNP Q194Q4 ARG 99 CONFLICT SEQADV 4RVD VAL A 99 UNP Q194Q4 PRO 100 CONFLICT SEQADV 4RVD GLU A 100 UNP Q194Q4 SER 101 CONFLICT SEQADV 4RVD ARG A 101 UNP Q194Q4 ALA 102 CONFLICT SEQADV 4RVD PHE A 102 UNP Q194Q4 SER 103 CONFLICT SEQADV 4RVD GLY A 103 UNP Q194Q4 ALA 104 CONFLICT SEQADV 4RVD ILE A 104 UNP Q194Q4 SER 105 CONFLICT SEQADV 4RVD HIS A 421 UNP Q194Q4 EXPRESSION TAG SEQADV 4RVD HIS A 422 UNP Q194Q4 EXPRESSION TAG SEQADV 4RVD HIS A 423 UNP Q194Q4 EXPRESSION TAG SEQADV 4RVD HIS A 424 UNP Q194Q4 EXPRESSION TAG SEQADV 4RVD HIS A 425 UNP Q194Q4 EXPRESSION TAG SEQADV 4RVD HIS A 426 UNP Q194Q4 EXPRESSION TAG SEQRES 1 A 426 MET ASP ILE TYR GLY THR ALA ARG ALA VAL THR THR CYS SEQRES 2 A 426 ARG MET CYS GLY ALA GLN ASP TRP GLN GLU VAL VAL ASP SEQRES 3 A 426 PHE GLY PRO VAL PRO LEU ALA ASP SER PHE LEU GLU PRO SEQRES 4 A 426 ALA ALA SER TYR ASP ASP GLU PRO ARG TYR PRO LEU ALA SEQRES 5 A 426 VAL VAL SER CYS ARG SER CYS ARG LEU MET SER LEU THR SEQRES 6 A 426 HIS VAL VAL ASP PRO GLU VAL LEU TYR ARG THR TYR PRO SEQRES 7 A 426 TYR THR THR SER ASP SER GLU THR ILE LYS LYS HIS MET SEQRES 8 A 426 GLY HIS VAL VAL ALA VAL CYS VAL GLU ARG PHE GLY ILE SEQRES 9 A 426 PRO GLU GLY SER PHE VAL LEU GLU ILE GLY SER ASN THR SEQRES 10 A 426 GLY SER GLN LEU LYS ALA PHE GLN ASN ALA GLY MET ARG SEQRES 11 A 426 THR LEU GLY ILE ASP PRO ALA ARG ASN ILE ALA ALA VAL SEQRES 12 A 426 ALA ASN GLU ARG GLY ILE GLU THR LEU PRO GLU PHE PHE SEQRES 13 A 426 SER VAL ASP THR ALA ALA LEU VAL LYS LYS THR HIS GLY SEQRES 14 A 426 THR PRO GLN LEU VAL LEU GLY ARG HIS VAL PHE ALA HIS SEQRES 15 A 426 ILE ASP ASP VAL SER ALA VAL ALA GLU GLY VAL ARG ASP SEQRES 16 A 426 LEU LEU GLY PRO ASP SER LEU PHE ALA ILE GLU VAL PRO SEQRES 17 A 426 TYR LEU VAL ASP MET LEU GLU ARG ASN GLU PHE ASP THR SEQRES 18 A 426 ILE TYR HIS GLU HIS LEU SER TYR ILE GLY VAL GLY SER SEQRES 19 A 426 LEU VAL ALA LEU PHE ARG ARG HIS GLY LEU ARG VAL VAL SEQRES 20 A 426 ASP VAL GLU ARG LEU ALA VAL HIS GLY GLY SER ILE LEU SEQRES 21 A 426 VAL PHE VAL GLY LEU ASP GLU GLY THR ARG ALA THR ALA SEQRES 22 A 426 PRO VAL VAL GLU GLU LEU ILE ALA LEU GLU LYS GLU ARG SEQRES 23 A 426 GLY LEU TYR GLU ASP ALA THR TYR GLU ARG PHE ALA ARG SEQRES 24 A 426 HIS VAL ALA GLU ILE THR ALA GLU LEU THR SER MET VAL SEQRES 25 A 426 ARG SER LEU ARG ALA GLU GLY LYS ARG ILE ALA GLY TYR SEQRES 26 A 426 GLY ALA PRO ALA LYS GLY ASN THR LEU LEU ASN VAL CYS SEQRES 27 A 426 GLY LEU THR ALA ASP ASP LEU GLU PHE CYS CSO ASP THR SEQRES 28 A 426 THR GLU PHE LYS GLN GLY LEU VAL LEU PRO GLY THR HIS SEQRES 29 A 426 ILE PRO VAL ARG SER PRO GLU TYR ALA LYS THR GLN ALA SEQRES 30 A 426 ILE ASP TYR TYR LEU LEU LEU ALA TRP ASN TYR GLY GLU SEQRES 31 A 426 GLU ILE LEU ALA LYS GLU GLY PRO PHE LEU ALA ASP GLY SEQRES 32 A 426 GLY ARG PHE ILE LEU PRO ASN PRO ARG PRO SER ILE VAL SEQRES 33 A 426 PRO PRO GLY GLU HIS HIS HIS HIS HIS HIS MODRES 4RVD CSO A 349 CYS S-HYDROXYCYSTEINE HET CSO A 349 7 HET ZN A 501 1 HET SAM A 502 27 HET ACT A 503 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 ZN ZN 2+ FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *75(H2 O) HELIX 1 1 ASP A 69 ARG A 75 1 7 HELIX 2 2 SER A 84 GLY A 103 1 20 HELIX 3 3 GLY A 118 ALA A 127 1 10 HELIX 4 4 ALA A 137 GLY A 148 1 12 HELIX 5 5 SER A 157 GLY A 169 1 13 HELIX 6 6 VAL A 179 ILE A 183 5 5 HELIX 7 7 ASP A 185 LEU A 197 1 13 HELIX 8 8 TYR A 209 ARG A 216 1 8 HELIX 9 9 GLU A 218 ILE A 222 5 5 HELIX 10 10 GLY A 231 ARG A 241 1 11 HELIX 11 11 ALA A 253 GLY A 256 5 4 HELIX 12 12 PRO A 274 ARG A 286 1 13 HELIX 13 13 GLU A 290 GLU A 318 1 29 HELIX 14 14 PRO A 328 GLY A 339 1 12 HELIX 15 15 THR A 352 GLN A 356 5 5 HELIX 16 16 SER A 369 GLN A 376 1 8 HELIX 17 17 ALA A 385 ASN A 387 5 3 HELIX 18 18 TYR A 388 LYS A 395 1 8 HELIX 19 19 GLU A 396 ASP A 402 1 7 SHEET 1 A 2 ARG A 8 ALA A 9 0 SHEET 2 A 2 HIS A 66 VAL A 67 -1 O VAL A 67 N ARG A 8 SHEET 1 B 4 TRP A 21 VAL A 30 0 SHEET 2 B 4 TYR A 49 CYS A 56 -1 O SER A 55 N GLN A 22 SHEET 3 B 4 MET A 62 LEU A 64 -1 O SER A 63 N VAL A 54 SHEET 4 B 4 SER A 228 TYR A 229 -1 O TYR A 229 N MET A 62 SHEET 1 C 7 THR A 151 LEU A 152 0 SHEET 2 C 7 ARG A 130 ILE A 134 1 N GLY A 133 O LEU A 152 SHEET 3 C 7 PHE A 109 ILE A 113 1 N VAL A 110 O ARG A 130 SHEET 4 C 7 LEU A 173 ARG A 177 1 O LEU A 175 N ILE A 113 SHEET 5 C 7 LEU A 202 PRO A 208 1 O ALA A 204 N VAL A 174 SHEET 6 C 7 SER A 258 LEU A 265 -1 O VAL A 261 N ILE A 205 SHEET 7 C 7 LEU A 244 LEU A 252 -1 N ARG A 245 O GLY A 264 SHEET 1 D 6 VAL A 367 ARG A 368 0 SHEET 2 D 6 CYS A 348 CSO A 349 1 N CYS A 348 O ARG A 368 SHEET 3 D 6 ILE A 322 TYR A 325 1 N GLY A 324 O CSO A 349 SHEET 4 D 6 TYR A 380 LEU A 383 1 O LEU A 382 N TYR A 325 SHEET 5 D 6 ARG A 405 LEU A 408 1 O ILE A 407 N LEU A 383 SHEET 6 D 6 SER A 414 VAL A 416 -1 O VAL A 416 N PHE A 406 LINK C CYS A 348 N CSO A 349 1555 1555 1.33 LINK C CSO A 349 N ASP A 350 1555 1555 1.33 LINK SG CYS A 13 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 16 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 56 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 59 ZN ZN A 501 1555 1555 2.33 CISPEP 1 ASN A 410 PRO A 411 0 -2.15 CISPEP 2 VAL A 416 PRO A 417 0 2.53 SITE 1 AC1 4 CYS A 13 CYS A 16 CYS A 56 CYS A 59 SITE 1 AC2 14 TYR A 74 ILE A 113 GLY A 114 ASN A 116 SITE 2 AC2 14 ASP A 135 PRO A 136 ALA A 137 PHE A 155 SITE 3 AC2 14 PHE A 156 ARG A 177 HIS A 178 VAL A 179 SITE 4 AC2 14 ILE A 183 HOH A 623 SITE 1 AC3 3 CSO A 349 LYS A 374 GLU A 396 CRYST1 134.767 134.767 129.705 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007710 0.00000