HEADER OXIDOREDUCTASE 27-NOV-14 4RVP TITLE CRYSTAL STRUCTURE OF SUPEROXIDE DISMUTASE FROM SEDUM ALFREDII COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEDUM ALFREDII; SOURCE 3 ORGANISM_TAXID: 439688; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.QIU,C.LI,J.ZHAI,L.TANG,H.ZHANG,M.YUAN,X.HU REVDAT 2 20-SEP-23 4RVP 1 REMARK LINK REVDAT 1 16-DEC-15 4RVP 0 JRNL AUTH R.QIU,C.LI,J.ZHAI,L.TANG,H.ZHANG,M.YUAN,X.HU JRNL TITL THE POSITIVE EFFECTS OF CD AND CD-ZN RELATIONSHIP IN THE JRNL TITL 2 ZN-RELATED PHYSIOLOGICAL PROCESSES INVOLVED IN GROWTH IN THE JRNL TITL 3 ZN/CD HYPERACCUMULATOR SEDUM ALFREDII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0704 - 5.5829 0.99 2629 125 0.1573 0.2255 REMARK 3 2 5.5829 - 4.4394 1.00 2606 129 0.1694 0.2286 REMARK 3 3 4.4394 - 3.8805 1.00 2531 149 0.1896 0.2643 REMARK 3 4 3.8805 - 3.5268 1.00 2569 145 0.2185 0.2786 REMARK 3 5 3.5268 - 3.2746 1.00 2583 130 0.2518 0.2713 REMARK 3 6 3.2746 - 3.0819 1.00 2551 125 0.2799 0.3641 REMARK 3 7 3.0819 - 2.9278 1.00 2555 131 0.2858 0.3867 REMARK 3 8 2.9278 - 2.8005 1.00 2591 130 0.2985 0.3380 REMARK 3 9 2.8005 - 2.6928 1.00 2538 136 0.3110 0.4185 REMARK 3 10 2.6928 - 2.6000 1.00 2559 138 0.3098 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6734 REMARK 3 ANGLE : 1.826 9177 REMARK 3 CHIRALITY : 0.074 1082 REMARK 3 PLANARITY : 0.008 1247 REMARK 3 DIHEDRAL : 13.848 2362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.069 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.340 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3KM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG4000,0.1M SODIUM CACODYLATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.89050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 9 REMARK 465 ILE A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 MET B 9 REMARK 465 ILE B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 MET C 9 REMARK 465 ILE C 10 REMARK 465 LEU C 11 REMARK 465 ALA C 12 REMARK 465 ALA C 13 REMARK 465 MET E 9 REMARK 465 ILE E 10 REMARK 465 LEU E 11 REMARK 465 ALA E 12 REMARK 465 ALA E 13 REMARK 465 MET F 9 REMARK 465 ILE F 10 REMARK 465 LEU F 11 REMARK 465 ALA F 12 REMARK 465 ALA F 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 34 CG2 REMARK 470 LYS B 14 CD CE NZ REMARK 470 THR B 34 CG2 REMARK 470 LYS C 14 CD CE NZ REMARK 470 THR C 34 CG2 REMARK 470 LYS D 14 CD CE NZ REMARK 470 THR D 34 CG2 REMARK 470 LYS E 14 CD CE NZ REMARK 470 THR E 34 CG2 REMARK 470 LYS F 14 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG F 91 OD2 ASP F 113 2.12 REMARK 500 O GLU F 36 N GLY F 39 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 155 OE1 GLU D 144 1655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 142 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 GLY C 139 N - CA - C ANGL. DEV. = -35.3 DEGREES REMARK 500 LYS C 140 CB - CA - C ANGL. DEV. = -39.0 DEGREES REMARK 500 LYS C 140 N - CA - C ANGL. DEV. = 35.7 DEGREES REMARK 500 GLY C 141 C - N - CA ANGL. DEV. = 28.4 DEGREES REMARK 500 GLY C 142 N - CA - C ANGL. DEV. = 27.8 DEGREES REMARK 500 HIS C 143 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 GLY F 150 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -168.13 -117.08 REMARK 500 GLU A 37 -136.80 54.16 REMARK 500 ILE A 90 76.17 -101.72 REMARK 500 ASN A 102 -167.98 -73.39 REMARK 500 ARG A 127 -162.20 -102.48 REMARK 500 GLU B 37 -124.97 54.33 REMARK 500 ASN B 102 -168.68 -75.25 REMARK 500 ARG B 127 -162.41 -102.13 REMARK 500 ASN B 151 -122.24 48.25 REMARK 500 ALA B 152 -10.15 78.90 REMARK 500 SER C 25 -161.29 -118.55 REMARK 500 GLU C 37 -139.84 58.23 REMARK 500 ILE C 90 79.29 -110.24 REMARK 500 ARG C 127 -164.85 -102.03 REMARK 500 ASN C 151 45.86 38.90 REMARK 500 PRO C 165 163.90 -48.58 REMARK 500 SER D 25 -165.65 -113.23 REMARK 500 GLU D 37 -128.79 57.83 REMARK 500 ARG D 127 -162.46 -103.08 REMARK 500 LEU D 138 -156.98 65.95 REMARK 500 LYS D 140 -154.07 -123.07 REMARK 500 SER E 25 -165.49 -123.68 REMARK 500 GLU E 37 -135.06 55.93 REMARK 500 ILE E 90 74.63 -101.54 REMARK 500 ARG E 127 -165.98 -105.06 REMARK 500 LYS E 140 49.25 -143.30 REMARK 500 SER F 25 -163.79 -120.81 REMARK 500 GLU F 37 -123.05 56.47 REMARK 500 ASP F 38 54.35 -117.09 REMARK 500 THR F 65 25.02 -146.87 REMARK 500 ASN F 102 -169.85 -75.31 REMARK 500 ARG F 127 -163.24 -104.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS C 140 GLY C 141 143.92 REMARK 500 GLU E 89 ILE E 90 140.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP C 137 10.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 ND1 REMARK 620 2 HIS A 83 ND1 113.0 REMARK 620 3 HIS A 92 ND1 110.3 127.4 REMARK 620 4 ASP A 95 OD1 100.5 98.6 101.5 REMARK 620 5 ASP A 95 OD2 153.8 69.0 84.7 54.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 75 ND1 REMARK 620 2 HIS B 83 ND1 105.6 REMARK 620 3 ASP B 95 OD1 103.2 81.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 75 ND1 REMARK 620 2 HIS C 83 ND1 97.8 REMARK 620 3 ASP C 95 OD1 112.6 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 75 ND1 REMARK 620 2 HIS D 83 ND1 110.0 REMARK 620 3 HIS D 92 ND1 94.7 136.0 REMARK 620 4 ASP D 95 OD1 106.5 99.5 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 75 ND1 REMARK 620 2 HIS E 83 ND1 110.2 REMARK 620 3 HIS E 92 ND1 116.8 126.7 REMARK 620 4 ASP E 95 OD1 102.7 90.6 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 75 ND1 REMARK 620 2 HIS F 83 ND1 117.5 REMARK 620 3 HIS F 92 ND1 107.0 124.9 REMARK 620 4 ASP F 95 OD1 102.4 93.3 107.8 REMARK 620 5 ASP F 95 OD2 156.4 68.0 84.2 54.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KM1 RELATED DB: PDB REMARK 900 ZINC-RECONSTITUTED TOMATO CHLOROPLAST SUPEROXIDE DISMUTASE DBREF 4RVP A 9 166 PDB 4RVP 4RVP 9 166 DBREF 4RVP B 9 166 PDB 4RVP 4RVP 9 166 DBREF 4RVP C 9 166 PDB 4RVP 4RVP 9 166 DBREF 4RVP D 9 166 PDB 4RVP 4RVP 9 166 DBREF 4RVP E 9 166 PDB 4RVP 4RVP 9 166 DBREF 4RVP F 9 166 PDB 4RVP 4RVP 9 166 SEQRES 1 A 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 A 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 A 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 A 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 A 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 A 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 A 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 A 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 A 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 A 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 A 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 A 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 A 158 PRO THR SEQRES 1 B 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 B 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 B 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 B 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 B 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 B 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 B 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 B 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 B 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 B 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 B 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 B 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 B 158 PRO THR SEQRES 1 C 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 C 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 C 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 C 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 C 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 C 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 C 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 C 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 C 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 C 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 C 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 C 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 C 158 PRO THR SEQRES 1 D 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 D 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 D 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 D 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 D 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 D 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 D 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 D 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 D 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 D 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 D 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 D 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 D 158 PRO THR SEQRES 1 E 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 E 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 E 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 E 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 E 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 E 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 E 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 E 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 E 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 E 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 E 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 E 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 E 158 PRO THR SEQRES 1 F 158 MET ILE LEU ALA ALA LYS LYS LYS ALA VAL ALA VAL LEU SEQRES 2 F 158 LYS GLY ASN SER ALA VAL GLU GLY VAL VAL THR LEU THR SEQRES 3 F 158 GLN GLU GLU ASP GLY PRO THR THR VAL ASN VAL ARG ILE SEQRES 4 F 158 THR GLY LEU THR PRO GLY PRO HIS GLY PHE HIS LEU HIS SEQRES 5 F 158 GLU PHE GLY ASP THR THR ASN GLY CYS ILE SER THR GLY SEQRES 6 F 158 PRO HIS PHE ASN PRO LYS GLY LEU THR HIS GLY ALA PRO SEQRES 7 F 158 GLU ASP GLU ILE ARG HIS ALA GLY ASP LEU GLY ASN ILE SEQRES 8 F 158 VAL ALA ASN ALA ASP GLY VAL ALA GLU VAL THR ILE VAL SEQRES 9 F 158 ASP ASN GLN ILE PRO LEU THR GLY PRO ASN ALA VAL VAL SEQRES 10 F 158 GLY ARG ALA PHE VAL VAL HIS GLU LEU GLU ASP ASP LEU SEQRES 11 F 158 GLY LYS GLY GLY HIS GLU LEU SER LEU SER THR GLY ASN SEQRES 12 F 158 ALA GLY GLY ARG LEU ALA CYS GLY VAL ILE GLY LEU THR SEQRES 13 F 158 PRO THR HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HET ZN D 201 1 HET ZN E 201 1 HET ZN F 201 1 HETNAM ZN ZINC ION FORMUL 7 ZN 6(ZN 2+) FORMUL 13 HOH *90(H2 O) HELIX 1 1 ASN A 67 GLY A 73 5 7 HELIX 2 2 GLU A 144 SER A 148 5 5 HELIX 3 3 ASN B 67 GLY B 73 5 7 HELIX 4 4 ASN C 67 GLY C 73 5 7 HELIX 5 5 ASN D 67 GLY D 73 5 7 HELIX 6 6 ASN E 67 GLY E 73 5 7 HELIX 7 7 ASN F 67 GLY F 73 5 7 HELIX 8 8 HIS F 143 LEU F 147 5 5 SHEET 1 A 5 ALA A 107 ASP A 113 0 SHEET 2 A 5 THR A 41 THR A 48 -1 N VAL A 43 O ILE A 111 SHEET 3 A 5 GLU A 28 GLN A 35 -1 N THR A 34 O THR A 42 SHEET 4 A 5 LYS A 15 LEU A 21 -1 N LEU A 21 O GLY A 29 SHEET 5 A 5 GLY A 162 LEU A 163 -1 O GLY A 162 N VAL A 18 SHEET 1 B 4 ASP A 95 ALA A 101 0 SHEET 2 B 4 GLY A 53 HIS A 60 -1 N HIS A 55 O ILE A 99 SHEET 3 B 4 ALA A 128 HIS A 132 -1 O HIS A 132 N GLY A 56 SHEET 4 B 4 ARG A 155 VAL A 160 -1 O ALA A 157 N VAL A 131 SHEET 1 C 5 ALA B 107 ASP B 113 0 SHEET 2 C 5 THR B 41 THR B 48 -1 N VAL B 45 O VAL B 109 SHEET 3 C 5 GLU B 28 GLN B 35 -1 N THR B 34 O THR B 42 SHEET 4 C 5 LYS B 15 LEU B 21 -1 N ALA B 17 O LEU B 33 SHEET 5 C 5 GLY B 162 LEU B 163 -1 O GLY B 162 N VAL B 18 SHEET 1 D 4 ASP B 95 ALA B 101 0 SHEET 2 D 4 GLY B 53 HIS B 60 -1 N GLY B 53 O ALA B 101 SHEET 3 D 4 ALA B 128 HIS B 132 -1 O HIS B 132 N GLY B 56 SHEET 4 D 4 ARG B 155 VAL B 160 -1 O ALA B 157 N VAL B 131 SHEET 1 E 5 ALA C 107 ASP C 113 0 SHEET 2 E 5 THR C 41 THR C 48 -1 N ILE C 47 O ALA C 107 SHEET 3 E 5 GLU C 28 GLN C 35 -1 N THR C 34 O THR C 42 SHEET 4 E 5 LYS C 15 LEU C 21 -1 N LEU C 21 O GLY C 29 SHEET 5 E 5 GLY C 162 LEU C 163 -1 O GLY C 162 N VAL C 18 SHEET 1 F 4 ASP C 95 ALA C 101 0 SHEET 2 F 4 GLY C 53 HIS C 60 -1 N GLY C 53 O ALA C 101 SHEET 3 F 4 ALA C 128 HIS C 132 -1 O HIS C 132 N GLY C 56 SHEET 4 F 4 ARG C 155 VAL C 160 -1 O ALA C 157 N VAL C 131 SHEET 1 G 5 ALA D 107 ASP D 113 0 SHEET 2 G 5 THR D 41 THR D 48 -1 N VAL D 43 O ILE D 111 SHEET 3 G 5 GLU D 28 GLU D 36 -1 N THR D 34 O THR D 42 SHEET 4 G 5 LYS D 14 LEU D 21 -1 N ALA D 17 O LEU D 33 SHEET 5 G 5 GLY D 162 LEU D 163 -1 O GLY D 162 N VAL D 18 SHEET 1 H 4 ASP D 95 ALA D 101 0 SHEET 2 H 4 GLY D 53 HIS D 60 -1 N HIS D 55 O ILE D 99 SHEET 3 H 4 ALA D 128 HIS D 132 -1 O HIS D 132 N GLY D 56 SHEET 4 H 4 ARG D 155 VAL D 160 -1 O GLY D 159 N PHE D 129 SHEET 1 I 8 ASP E 95 ALA E 101 0 SHEET 2 I 8 GLY E 53 HIS E 60 -1 N GLY E 53 O ALA E 101 SHEET 3 I 8 ALA E 128 HIS E 132 -1 O VAL E 130 N HIS E 58 SHEET 4 I 8 ARG E 155 VAL E 160 -1 O ALA E 157 N VAL E 131 SHEET 5 I 8 LYS E 15 GLY E 23 -1 N LYS E 22 O CYS E 158 SHEET 6 I 8 GLU E 28 GLN E 35 -1 O VAL E 31 N ALA E 19 SHEET 7 I 8 THR E 41 THR E 48 -1 O THR E 48 N GLU E 28 SHEET 8 I 8 ALA E 107 ASP E 113 -1 O ASP E 113 N THR E 41 SHEET 1 J 6 ASP E 95 ALA E 101 0 SHEET 2 J 6 GLY E 53 HIS E 60 -1 N GLY E 53 O ALA E 101 SHEET 3 J 6 ALA E 128 HIS E 132 -1 O VAL E 130 N HIS E 58 SHEET 4 J 6 ARG E 155 VAL E 160 -1 O ALA E 157 N VAL E 131 SHEET 5 J 6 LYS E 15 GLY E 23 -1 N LYS E 22 O CYS E 158 SHEET 6 J 6 GLY E 162 LEU E 163 -1 O GLY E 162 N VAL E 18 SHEET 1 K 5 ALA F 107 ASP F 113 0 SHEET 2 K 5 THR F 41 THR F 48 -1 N VAL F 43 O ILE F 111 SHEET 3 K 5 GLU F 28 GLN F 35 -1 N GLU F 28 O THR F 48 SHEET 4 K 5 LYS F 15 LEU F 21 -1 N ALA F 17 O LEU F 33 SHEET 5 K 5 GLY F 162 LEU F 163 -1 O GLY F 162 N VAL F 18 SHEET 1 L 4 ASP F 95 ALA F 101 0 SHEET 2 L 4 GLY F 53 HIS F 60 -1 N GLY F 53 O ALA F 101 SHEET 3 L 4 ALA F 128 HIS F 132 -1 O HIS F 132 N GLY F 56 SHEET 4 L 4 ARG F 155 VAL F 160 -1 O ALA F 157 N VAL F 131 SSBOND 1 CYS A 69 CYS A 158 1555 1555 2.03 SSBOND 2 CYS B 69 CYS B 158 1555 1555 2.05 SSBOND 3 CYS C 69 CYS C 158 1555 1555 2.02 SSBOND 4 CYS D 69 CYS D 158 1555 1555 2.03 SSBOND 5 CYS E 69 CYS E 158 1555 1555 2.04 SSBOND 6 CYS F 69 CYS F 158 1555 1555 2.03 LINK ND1 HIS A 75 ZN ZN A 201 1555 1555 2.19 LINK ND1 HIS A 83 ZN ZN A 201 1555 1555 2.14 LINK ND1 HIS A 92 ZN ZN A 201 1555 1555 2.20 LINK OD1 ASP A 95 ZN ZN A 201 1555 1555 1.91 LINK OD2 ASP A 95 ZN ZN A 201 1555 1555 2.68 LINK ND1 HIS B 75 ZN ZN B 201 1555 1555 2.18 LINK ND1 HIS B 83 ZN ZN B 201 1555 1555 2.29 LINK OD1 ASP B 95 ZN ZN B 201 1555 1555 1.97 LINK ND1 HIS C 75 ZN ZN C 201 1555 1555 2.51 LINK ND1 HIS C 83 ZN ZN C 201 1555 1555 2.57 LINK OD1 ASP C 95 ZN ZN C 201 1555 1555 1.85 LINK ND1 HIS D 75 ZN ZN D 201 1555 1555 2.19 LINK ND1 HIS D 83 ZN ZN D 201 1555 1555 1.98 LINK ND1 HIS D 92 ZN ZN D 201 1555 1555 2.00 LINK OD1 ASP D 95 ZN ZN D 201 1555 1555 1.94 LINK ND1 HIS E 75 ZN ZN E 201 1555 1555 2.26 LINK ND1 HIS E 83 ZN ZN E 201 1555 1555 2.26 LINK ND1 HIS E 92 ZN ZN E 201 1555 1555 1.93 LINK OD1 ASP E 95 ZN ZN E 201 1555 1555 1.97 LINK ND1 HIS F 75 ZN ZN F 201 1555 1555 2.09 LINK ND1 HIS F 83 ZN ZN F 201 1555 1555 2.19 LINK ND1 HIS F 92 ZN ZN F 201 1555 1555 2.06 LINK OD1 ASP F 95 ZN ZN F 201 1555 1555 1.90 LINK OD2 ASP F 95 ZN ZN F 201 1555 1555 2.69 CISPEP 1 GLY A 141 GLY A 142 0 -19.02 CISPEP 2 GLY E 141 GLY E 142 0 -12.45 SITE 1 AC1 5 HIS A 75 HIS A 83 HIS A 92 ASP A 95 SITE 2 AC1 5 SER A 148 SITE 1 AC2 4 HIS B 75 HIS B 83 HIS B 92 ASP B 95 SITE 1 AC3 4 HIS C 75 HIS C 83 HIS C 92 ASP C 95 SITE 1 AC4 4 HIS D 75 HIS D 83 HIS D 92 ASP D 95 SITE 1 AC5 4 HIS E 75 HIS E 83 HIS E 92 ASP E 95 SITE 1 AC6 4 HIS F 75 HIS F 83 HIS F 92 ASP F 95 CRYST1 49.979 85.781 105.312 90.00 99.84 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020008 0.000000 0.003472 0.00000 SCALE2 0.000000 0.011658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009637 0.00000