HEADER TRANSPORT PROTEIN 28-NOV-14 4RVW TITLE STRUCTURE OF THE BACTERIAL ZN-TRANSPORTER ZNUD FROM NEISSERIA TITLE 2 MENINGITIDIS (SOAKED WITH 20 MICROMOLAR ZINC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZNUD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC UPTAKE PROTEIN D, TONB-DEPENDENT RECEPTOR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: NMB0964; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS OUTER MEMBRANE PROTEIN, ZINC TRANSPORTER, ZINC ACQUISITION, TONB KEYWDS 2 DEPENDANT RECEPTOR, VACCINE CANDIDATE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CALMETTES,T.F.MORAES REVDAT 3 28-FEB-24 4RVW 1 REMARK SEQADV LINK REVDAT 2 16-SEP-15 4RVW 1 JRNL REVDAT 1 19-AUG-15 4RVW 0 JRNL AUTH C.CALMETTES,C.ING,C.M.BUCKWALTER,M.EL BAKKOURI, JRNL AUTH 2 C.CHIEH-LIN LAI,A.POGOUTSE,S.D.GRAY-OWEN,R.POMES,T.F.MORAES JRNL TITL THE MOLECULAR MECHANISM OF ZINC ACQUISITION BY THE JRNL TITL 2 NEISSERIAL OUTER-MEMBRANE TRANSPORTER ZNUD. JRNL REF NAT COMMUN V. 6 7996 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26282243 JRNL DOI 10.1038/NCOMMS8996 REMARK 2 REMARK 2 RESOLUTION. 4.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.320 REMARK 3 R VALUE (WORKING SET) : 0.317 REMARK 3 FREE R VALUE : 0.380 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5435 - 7.6477 0.98 2632 131 0.2921 0.3651 REMARK 3 2 7.6477 - 6.0742 0.98 2586 144 0.3370 0.4056 REMARK 3 3 6.0742 - 5.3075 0.97 2569 130 0.3593 0.3800 REMARK 3 4 5.3075 - 4.8228 0.80 2130 108 0.3352 0.4219 REMARK 3 5 4.8228 - 4.4774 0.97 2570 149 0.3427 0.3625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.810 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 47.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 164.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 253.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4944 REMARK 3 ANGLE : 0.743 6678 REMARK 3 CHIRALITY : 0.050 689 REMARK 3 PLANARITY : 0.003 886 REMARK 3 DIHEDRAL : 10.888 1825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2695 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7456 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.477 REMARK 200 RESOLUTION RANGE LOW (A) : 47.541 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.20800 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : 2.03600 REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE PH 6.6, 0.5M REMARK 280 MAGNESIUM SULFATE, 2% (W/V) ETHYLENE GLYCOL, 0.7MM CADMIUM REMARK 280 CHLORIDE; 10 MM ZNCL SOAKING, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.77400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.79600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.79500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.77400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.79600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.79500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.77400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.79600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.79500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.77400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.79600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 LYS A 17 REMARK 465 SER A 18 REMARK 465 ARG A 19 REMARK 465 PRO A 20 REMARK 465 ARG A 21 REMARK 465 SER A 242 REMARK 465 HIS A 243 REMARK 465 GLU A 244 REMARK 465 TYR A 245 REMARK 465 ASP A 246 REMARK 465 ASP A 247 REMARK 465 CYS A 248 REMARK 465 HIS A 249 REMARK 465 ALA A 250 REMARK 465 ASP A 251 REMARK 465 ILE A 252 REMARK 465 ILE A 253 REMARK 465 TRP A 254 REMARK 465 GLN A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 ILE A 259 REMARK 465 ASN A 260 REMARK 465 LYS A 261 REMARK 465 ARG A 262 REMARK 465 TYR A 263 REMARK 465 LEU A 264 REMARK 465 GLN A 265 REMARK 465 LEU A 266 REMARK 465 TYR A 267 REMARK 465 PRO A 268 REMARK 465 HIS A 269 REMARK 465 LEU A 270 REMARK 465 LEU A 271 REMARK 465 THR A 272 REMARK 465 GLU A 273 REMARK 465 GLU A 274 REMARK 465 ASP A 275 REMARK 465 ILE A 276 REMARK 465 ASP A 277 REMARK 465 TYR A 278 REMARK 465 ASP A 279 REMARK 465 ASN A 280 REMARK 465 PRO A 281 REMARK 465 GLY A 282 REMARK 465 LEU A 283 REMARK 465 SER A 284 REMARK 465 CYS A 285 REMARK 465 GLY A 286 REMARK 465 PHE A 287 REMARK 465 HIS A 288 REMARK 465 ASP A 289 REMARK 465 ASP A 290 REMARK 465 ASP A 291 REMARK 465 ASN A 292 REMARK 465 ALA A 293 REMARK 465 HIS A 294 REMARK 465 ALA A 295 REMARK 465 HIS A 296 REMARK 465 THR A 297 REMARK 465 HIS A 298 REMARK 465 SER A 299 REMARK 465 GLN A 434 REMARK 465 TYR A 435 REMARK 465 ASP A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 LEU A 439 REMARK 465 ILE A 440 REMARK 465 ASP A 441 REMARK 465 ARG A 442 REMARK 465 GLU A 443 REMARK 465 ASN A 444 REMARK 465 TYR A 445 REMARK 465 TYR A 446 REMARK 465 ASN A 447 REMARK 465 HIS A 448 REMARK 465 PRO A 449 REMARK 465 LEU A 450 REMARK 465 PRO A 451 REMARK 465 ASP A 452 REMARK 465 LEU A 453 REMARK 465 GLY A 454 REMARK 465 ALA A 455 REMARK 465 HIS A 456 REMARK 465 SER A 559 REMARK 465 ILE A 560 REMARK 465 GLU A 561 REMARK 465 ASP A 562 REMARK 465 ASP A 563 REMARK 465 SER A 611 REMARK 465 LEU A 612 REMARK 465 PRO A 613 REMARK 465 GLY A 614 REMARK 465 ARG A 615 REMARK 465 GLU A 616 REMARK 465 ASP A 617 REMARK 465 ALA A 618 REMARK 465 TYR A 619 REMARK 465 GLY A 620 REMARK 465 ASN A 621 REMARK 465 ARG A 622 REMARK 465 PRO A 623 REMARK 465 PHE A 624 REMARK 465 ILE A 625 REMARK 465 ALA A 626 REMARK 465 GLN A 627 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 114.15 -161.75 REMARK 500 HIS A 86 83.92 60.25 REMARK 500 LYS A 142 146.64 -170.92 REMARK 500 ARG A 197 -101.04 60.06 REMARK 500 ASN A 198 54.61 -153.00 REMARK 500 ALA A 240 97.36 67.11 REMARK 500 GLN A 355 79.46 -150.30 REMARK 500 ARG A 368 -46.52 71.15 REMARK 500 ASP A 416 -83.85 58.17 REMARK 500 PHE A 418 119.89 -161.86 REMARK 500 HIS A 475 75.67 -165.59 REMARK 500 TYR A 494 57.98 -103.60 REMARK 500 HIS A 496 59.05 -164.24 REMARK 500 ASP A 529 -73.09 64.27 REMARK 500 ASN A 552 141.65 86.45 REMARK 500 GLU A 565 -101.97 -114.84 REMARK 500 ASN A 608 85.33 58.55 REMARK 500 ARG A 634 72.90 59.39 REMARK 500 LYS A 645 109.47 -160.62 REMARK 500 ASP A 650 -64.87 67.00 REMARK 500 TYR A 686 105.50 -161.81 REMARK 500 ARG A 688 116.97 -160.28 REMARK 500 THR A 690 -163.19 -109.92 REMARK 500 ASN A 703 72.53 58.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 87 ND1 82.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 GLU A 340 OE2 107.9 REMARK 620 3 HIS A 499 NE2 140.9 89.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 804 DBREF 4RVW A 1 734 UNP Q9JZN9 Y964_NEIMB 25 758 SEQADV 4RVW MET A -13 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW ALA A -12 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -11 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -10 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -9 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -8 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -7 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW HIS A -6 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW LEU A -5 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW VAL A -4 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW PRO A -3 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW ARG A -2 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW GLY A -1 UNP Q9JZN9 EXPRESSION TAG SEQADV 4RVW SER A 0 UNP Q9JZN9 EXPRESSION TAG SEQRES 1 A 748 MET ALA HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SEQRES 2 A 748 SER HIS GLU THR GLU GLN SER VAL ASP LEU GLU THR VAL SEQRES 3 A 748 SER VAL VAL GLY LYS SER ARG PRO ARG ALA THR SER GLY SEQRES 4 A 748 LEU LEU HIS THR SER THR ALA SER ASP LYS ILE ILE SER SEQRES 5 A 748 GLY ASP THR LEU ARG GLN LYS ALA VAL ASN LEU GLY ASP SEQRES 6 A 748 ALA LEU ASP GLY VAL PRO GLY ILE HIS ALA SER GLN TYR SEQRES 7 A 748 GLY GLY GLY ALA SER ALA PRO VAL ILE ARG GLY GLN THR SEQRES 8 A 748 GLY ARG ARG ILE LYS VAL LEU ASN HIS HIS GLY GLU THR SEQRES 9 A 748 GLY ASP MET ALA ASP PHE SER PRO ASP HIS ALA ILE MET SEQRES 10 A 748 VAL ASP THR ALA LEU SER GLN GLN VAL GLU ILE LEU ARG SEQRES 11 A 748 GLY PRO VAL THR LEU LEU TYR SER SER GLY ASN VAL ALA SEQRES 12 A 748 GLY LEU VAL ASP VAL ALA ASP GLY LYS ILE PRO GLU LYS SEQRES 13 A 748 MET PRO GLU ASN GLY VAL SER GLY GLU LEU GLY LEU ARG SEQRES 14 A 748 LEU SER SER GLY ASN LEU GLU LYS LEU THR SER GLY GLY SEQRES 15 A 748 ILE ASN ILE GLY LEU GLY LYS ASN PHE VAL LEU HIS THR SEQRES 16 A 748 GLU GLY LEU TYR ARG LYS SER GLY ASP TYR ALA VAL PRO SEQRES 17 A 748 ARG TYR ARG ASN LEU LYS ARG LEU PRO ASP SER HIS ALA SEQRES 18 A 748 ASP SER GLN THR GLY SER ILE GLY LEU SER TRP VAL GLY SEQRES 19 A 748 GLU LYS GLY PHE ILE GLY VAL ALA TYR SER ASP ARG ARG SEQRES 20 A 748 ASP GLN TYR GLY LEU PRO ALA HIS SER HIS GLU TYR ASP SEQRES 21 A 748 ASP CYS HIS ALA ASP ILE ILE TRP GLN LYS SER LEU ILE SEQRES 22 A 748 ASN LYS ARG TYR LEU GLN LEU TYR PRO HIS LEU LEU THR SEQRES 23 A 748 GLU GLU ASP ILE ASP TYR ASP ASN PRO GLY LEU SER CYS SEQRES 24 A 748 GLY PHE HIS ASP ASP ASP ASN ALA HIS ALA HIS THR HIS SEQRES 25 A 748 SER GLY ARG PRO TRP ILE ASP LEU ARG ASN LYS ARG TYR SEQRES 26 A 748 GLU LEU ARG ALA GLU TRP LYS GLN PRO PHE PRO GLY PHE SEQRES 27 A 748 GLU ALA LEU ARG VAL HIS LEU ASN ARG ASN ASP TYR ARG SEQRES 28 A 748 HIS ASP GLU LYS ALA GLY ASP ALA VAL GLU ASN PHE PHE SEQRES 29 A 748 ASN ASN GLN THR GLN ASN ALA ARG ILE GLU LEU ARG HIS SEQRES 30 A 748 GLN PRO ILE GLY ARG LEU LYS GLY SER TRP GLY VAL GLN SEQRES 31 A 748 TYR LEU GLN GLN LYS SER SER ALA LEU SER ALA ILE SER SEQRES 32 A 748 GLU ALA VAL LYS GLN PRO MET LEU LEU ASP ASN LYS VAL SEQRES 33 A 748 GLN HIS TYR SER PHE PHE GLY VAL GLU GLN ALA ASN TRP SEQRES 34 A 748 ASP ASN PHE THR LEU GLU GLY GLY VAL ARG VAL GLU LYS SEQRES 35 A 748 GLN LYS ALA SER ILE GLN TYR ASP LYS ALA LEU ILE ASP SEQRES 36 A 748 ARG GLU ASN TYR TYR ASN HIS PRO LEU PRO ASP LEU GLY SEQRES 37 A 748 ALA HIS ARG GLN THR ALA ARG SER PHE ALA LEU SER GLY SEQRES 38 A 748 ASN TRP TYR PHE THR PRO GLN HIS LYS LEU SER LEU THR SEQRES 39 A 748 ALA SER HIS GLN GLU ARG LEU PRO SER THR GLN GLU LEU SEQRES 40 A 748 TYR ALA HIS GLY LYS HIS VAL ALA THR ASN THR PHE GLU SEQRES 41 A 748 VAL GLY ASN LYS HIS LEU ASN LYS GLU ARG SER ASN ASN SEQRES 42 A 748 ILE GLU LEU ALA LEU GLY TYR GLU GLY ASP ARG TRP GLN SEQRES 43 A 748 TYR ASN LEU ALA LEU TYR ARG ASN ARG PHE GLY ASN TYR SEQRES 44 A 748 ILE TYR ALA GLN THR LEU ASN ASP GLY ARG GLY PRO LYS SEQRES 45 A 748 SER ILE GLU ASP ASP SER GLU MET LYS LEU VAL ARG TYR SEQRES 46 A 748 ASN GLN SER GLY ALA ASP PHE TYR GLY ALA GLU GLY GLU SEQRES 47 A 748 ILE TYR PHE LYS PRO THR PRO ARG TYR ARG ILE GLY VAL SEQRES 48 A 748 SER GLY ASP TYR VAL ARG GLY ARG LEU LYS ASN LEU PRO SEQRES 49 A 748 SER LEU PRO GLY ARG GLU ASP ALA TYR GLY ASN ARG PRO SEQRES 50 A 748 PHE ILE ALA GLN ASP ASP GLN ASN ALA PRO ARG VAL PRO SEQRES 51 A 748 ALA ALA ARG LEU GLY PHE HIS LEU LYS ALA SER LEU THR SEQRES 52 A 748 ASP ARG ILE ASP ALA ASN LEU ASP TYR TYR ARG VAL PHE SEQRES 53 A 748 ALA GLN ASN LYS LEU ALA ARG TYR GLU THR ARG THR PRO SEQRES 54 A 748 GLY HIS HIS MET LEU ASN LEU GLY ALA ASN TYR ARG ARG SEQRES 55 A 748 ASN THR ARG TYR GLY GLU TRP ASN TRP TYR VAL LYS ALA SEQRES 56 A 748 ASP ASN LEU LEU ASN GLN SER VAL TYR ALA HIS SER SER SEQRES 57 A 748 PHE LEU SER ASP THR PRO GLN MET GLY ARG SER PHE THR SEQRES 58 A 748 GLY GLY VAL ASN VAL LYS PHE HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HET SO4 A 804 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SO4 O4 S 2- HELIX 1 1 GLY A 39 ARG A 43 1 5 HELIX 2 2 ASN A 48 LEU A 53 1 6 HELIX 3 3 GLY A 117 TYR A 123 5 7 HELIX 4 4 SER A 489 TYR A 494 1 6 SHEET 1 A 4 LYS A 35 SER A 38 0 SHEET 2 A 4 SER A 109 LEU A 115 -1 O ILE A 114 N LYS A 35 SHEET 3 A 4 LEU A 131 ASP A 136 -1 O LEU A 131 N LEU A 115 SHEET 4 A 4 LYS A 82 LEU A 84 1 N LEU A 84 O VAL A 134 SHEET 1 B 2 ILE A 59 TYR A 64 0 SHEET 2 B 2 ALA A 68 ILE A 73 -1 O VAL A 72 N HIS A 60 SHEET 1 C10 GLU A 162 LEU A 164 0 SHEET 2 C10 VAL A 148 SER A 158 -1 N ARG A 155 O LEU A 164 SHEET 3 C10 GLY A 167 GLY A 172 -1 O ASN A 170 N SER A 149 SHEET 4 C10 VAL A 178 SER A 188 -1 O LEU A 179 N ILE A 171 SHEET 5 C10 ALA A 207 SER A 217 -1 O GLY A 215 N HIS A 180 SHEET 6 C10 PHE A 224 ARG A 232 -1 O ASP A 231 N GLY A 212 SHEET 7 C10 PRO A 302 TRP A 317 -1 O ARG A 314 N GLY A 226 SHEET 8 C10 PHE A 324 ALA A 342 -1 O ARG A 333 N TYR A 311 SHEET 9 C10 VAL A 346 THR A 354 -1 O ASN A 348 N GLU A 340 SHEET 10 C10 LYS A 370 SER A 383 -1 O SER A 383 N ASN A 351 SHEET 1 D 6 ALA A 207 SER A 217 0 SHEET 2 D 6 GLN A 235 GLY A 237 -1 O GLN A 235 N ASP A 208 SHEET 3 D 6 PRO A 302 TRP A 317 -1 O ILE A 304 N TYR A 236 SHEET 4 D 6 PHE A 324 ALA A 342 -1 O ARG A 333 N TYR A 311 SHEET 5 D 6 ALA A 357 HIS A 363 -1 O GLU A 360 N ARG A 328 SHEET 6 D 6 LYS A 370 SER A 383 -1 O VAL A 375 N ILE A 359 SHEET 1 E10 LYS A 370 SER A 383 0 SHEET 2 E10 VAL A 402 ASN A 414 -1 O SER A 406 N GLN A 376 SHEET 3 E10 PHE A 418 GLN A 429 -1 O VAL A 426 N PHE A 407 SHEET 4 E10 THR A 459 TYR A 470 -1 O SER A 462 N ARG A 425 SHEET 5 E10 HIS A 475 ARG A 486 -1 O ALA A 481 N LEU A 465 SHEET 6 E10 GLU A 515 GLY A 528 -1 O GLY A 525 N LYS A 476 SHEET 7 E10 TRP A 531 PHE A 542 -1 O LEU A 537 N LEU A 522 SHEET 8 E10 GLY A 575 PHE A 587 -1 O TYR A 586 N GLN A 532 SHEET 9 E10 TYR A 593 LYS A 607 -1 O TYR A 601 N ALA A 581 SHEET 10 E10 GLN A 630 ASN A 631 -1 O GLN A 630 N LEU A 606 SHEET 1 F 7 TYR A 593 LYS A 607 0 SHEET 2 F 7 ARG A 639 ALA A 646 -1 O GLY A 641 N SER A 598 SHEET 3 F 7 ILE A 652 VAL A 661 -1 O TYR A 658 N PHE A 642 SHEET 4 F 7 HIS A 677 ASN A 689 -1 O ASN A 681 N ASP A 657 SHEET 5 F 7 GLU A 694 ASP A 702 -1 O TRP A 695 N ARG A 688 SHEET 6 F 7 SER A 725 PHE A 734 -1 O SER A 725 N ASP A 702 SHEET 7 F 7 VAL A 148 SER A 158 -1 N LEU A 154 O VAL A 730 SHEET 1 G 4 HIS A 496 HIS A 499 0 SHEET 2 G 4 THR A 504 VAL A 507 -1 O GLU A 506 N GLY A 497 SHEET 3 G 4 LYS A 567 ASN A 572 1 O LYS A 567 N PHE A 505 SHEET 4 G 4 TYR A 547 LEU A 551 -1 N LEU A 551 O LEU A 568 LINK NE2 HIS A 86 ZN ZN A 802 1555 1555 2.56 LINK ND1 HIS A 87 ZN ZN A 802 1555 1555 2.17 LINK NE2 HIS A 100 ZN ZN A 801 1555 1555 2.05 LINK OE2 GLU A 340 ZN ZN A 801 1555 1555 1.92 LINK NE2 HIS A 496 ZN ZN A 803 1555 1555 2.51 LINK NE2 HIS A 499 ZN ZN A 801 1555 1555 1.82 CISPEP 1 ASN A 160 LEU A 161 0 -1.30 CISPEP 2 GLY A 220 GLU A 221 0 2.30 CISPEP 3 GLU A 221 LYS A 222 0 3.78 CISPEP 4 PRO A 473 GLN A 474 0 4.10 CISPEP 5 LEU A 551 ASN A 552 0 10.47 CISPEP 6 ASP A 553 GLY A 554 0 2.43 CISPEP 7 GLY A 556 PRO A 557 0 0.01 CISPEP 8 LEU A 648 THR A 649 0 -3.19 CISPEP 9 PRO A 675 GLY A 676 0 4.01 SITE 1 AC1 4 ASP A 99 HIS A 100 GLU A 340 HIS A 499 SITE 1 AC2 4 HIS A 86 HIS A 87 GLU A 141 HIS A 330 SITE 1 AC3 1 HIS A 496 SITE 1 AC4 3 ASP A 190 HIS A 206 ARG A 301 CRYST1 101.548 149.592 157.590 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006346 0.00000