HEADER LIGASE 29-NOV-14 4RVZ TITLE CRYSTAL STRUCTURE OF TRNA FLUORESCENT LABELING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS; COMPND 3 CHAIN: Z; COMPND 4 SYNONYM: TRNA(ILE2)-AGM2C SYNTHETASE, TRNA(ILE2) AGMATIDINE COMPND 5 SYNTHETASE; COMPND 6 EC: 6.3.4.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: TIAS, AF_2259; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B/PET28A KEYWDS TRNA MODIFICATION, PHOSPHORYLATION, TIAS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DONG,F.LI,J.WANG,W.GONG REVDAT 3 03-APR-24 4RVZ 1 REMARK LINK REVDAT 2 15-APR-15 4RVZ 1 JRNL REVDAT 1 11-MAR-15 4RVZ 0 JRNL AUTH F.LI,J.DONG,X.HU,W.GONG,J.LI,J.SHEN,H.TIAN,J.WANG JRNL TITL A COVALENT APPROACH FOR SITE-SPECIFIC RNA LABELING IN JRNL TITL 2 MAMMALIAN CELLS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 4597 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 25694369 JRNL DOI 10.1002/ANIE.201410433 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 11869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0676 - 4.5947 0.92 2811 154 0.1964 0.2525 REMARK 3 2 4.5947 - 3.6492 0.98 2832 147 0.2082 0.3151 REMARK 3 3 3.6492 - 3.1886 0.99 2842 140 0.2380 0.3518 REMARK 3 4 3.1886 - 2.9000 0.99 2812 131 0.2343 0.3643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3483 REMARK 3 ANGLE : 1.263 4710 REMARK 3 CHIRALITY : 0.085 513 REMARK 3 PLANARITY : 0.005 611 REMARK 3 DIHEDRAL : 16.852 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN Z AND RESID 1:420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6892 7.9868 51.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.6286 T22: 0.5256 REMARK 3 T33: 0.5687 T12: 0.0942 REMARK 3 T13: 0.0633 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.1374 L22: 0.5655 REMARK 3 L33: 2.7104 L12: -0.2251 REMARK 3 L13: 1.6922 L23: -0.0251 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: -0.1939 S13: -0.0079 REMARK 3 S21: -0.0533 S22: 0.0865 S23: -0.0602 REMARK 3 S31: -0.4051 S32: 0.0773 S33: 0.0271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: SELENOMETHIONINE DERIVED TIAS COORDINATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES, PH 7.0-7.2, 0.5 M NH4AC, REMARK 280 0.02 M MGCL2, 1.5-2.5% PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.63450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.81150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.81150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.81725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.81150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.81150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.45175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.81150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.81150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.81725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.81150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.81150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.45175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.63450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR Z 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS Z 52 CG CD CE NZ REMARK 470 THR Z 53 OG1 CG2 REMARK 470 LYS Z 89 CG CD CE NZ REMARK 470 ARG Z 270 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL Z 396 NH2 ARG Z 401 2.10 REMARK 500 OD1 ASP Z 318 NH2 ARG Z 387 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER Z 13 23.79 -77.70 REMARK 500 ARG Z 14 -60.85 -106.51 REMARK 500 THR Z 19 -59.59 114.99 REMARK 500 ASN Z 46 112.03 -32.14 REMARK 500 ASN Z 56 77.94 -115.60 REMARK 500 MET Z 84 75.14 -69.60 REMARK 500 ASP Z 115 -151.13 -136.21 REMARK 500 LYS Z 137 -116.61 -132.74 REMARK 500 PHE Z 169 138.10 154.56 REMARK 500 VAL Z 195 143.56 -176.87 REMARK 500 LEU Z 213 -79.17 -82.42 REMARK 500 ASP Z 237 -79.81 -97.91 REMARK 500 ASP Z 249 28.72 44.38 REMARK 500 HIS Z 259 -79.80 -42.17 REMARK 500 THR Z 274 -83.96 -95.98 REMARK 500 GLU Z 281 -86.43 54.89 REMARK 500 PRO Z 303 0.99 -59.88 REMARK 500 LYS Z 305 -111.63 53.75 REMARK 500 PHE Z 307 -30.42 -35.03 REMARK 500 LEU Z 313 31.27 -93.63 REMARK 500 VAL Z 339 -84.81 -90.64 REMARK 500 SER Z 354 -64.41 -107.57 REMARK 500 SER Z 405 105.78 -49.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE Z 7 ASP Z 8 147.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 8 OD2 REMARK 620 2 TPO Z 18 O2P 153.6 REMARK 620 3 ACP Z 502 O1B 104.6 100.4 REMARK 620 4 ACP Z 502 O2A 83.8 87.7 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 9 OD1 REMARK 620 2 ASP Z 11 O 143.2 REMARK 620 3 ACP Z 502 O1A 100.1 108.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN Z 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 352 SG REMARK 620 2 CYS Z 355 SG 94.4 REMARK 620 3 CYS Z 370 SG 92.1 105.7 REMARK 620 4 CYS Z 373 SG 103.3 146.8 101.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN Z 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP Z 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZNN Z 505 DBREF 4RVZ Z 1 420 UNP O28025 TIAS_ARCFU 1 420 SEQRES 1 Z 420 MET ARG VAL TRP VAL GLY ILE ASP ASP THR ASP SER SER SEQRES 2 Z 420 ARG GLY MET CYS TPO THR TYR LEU ALA VAL LEU ALA MET SEQRES 3 Z 420 GLU ARG VAL GLU ARG GLU LEU GLY LYS VAL ILE GLY PHE SEQRES 4 Z 420 PRO ARG LEU ILE ARG LEU ASN PRO THR ILE PRO TYR LYS SEQRES 5 Z 420 THR ARG GLY ASN GLY ALA VAL SER PHE LEU VAL GLU VAL SEQRES 6 Z 420 ASP ASP VAL GLY GLU LEU VAL ASP VAL VAL ASN GLU VAL SEQRES 7 Z 420 ILE ILE GLU HIS ALA MET LEU ASP ASP GLU LYS THR ASN SEQRES 8 Z 420 PRO GLY ALA VAL PHE VAL ASP GLU GLU LEU ALA VAL LYS SEQRES 9 Z 420 LEU LYS PRO PHE ALA ASP LYS ALA ILE LYS ASP VAL LEU SEQRES 10 Z 420 GLN ILE ASP GLU ALA LEU PHE VAL ILE GLY LYS TYR PHE SEQRES 11 Z 420 ILE PRO HIS LEU ARG HIS LYS LYS GLY ARG GLY LEU ILE SEQRES 12 Z 420 GLY ALA LEU ALA ALA VAL GLY ALA GLU LEU GLU ASP PHE SEQRES 13 Z 420 THR LEU GLU LEU ILE ALA TYR ARG TYR PRO GLU ARG PHE SEQRES 14 Z 420 GLY THR GLU ARG GLU TYR ASP GLU GLU SER PHE PHE ASP SEQRES 15 Z 420 MET ASP TYR GLU LEU TYR PRO GLN THR PHE ASP ASN VAL SEQRES 16 Z 420 ASP TRP CYS ASN ASP VAL VAL VAL CYS ILE PRO ASN THR SEQRES 17 Z 420 PRO CYS PRO VAL LEU TYR GLY ILE ARG GLY GLU SER VAL SEQRES 18 Z 420 GLU ALA LEU TYR LYS ALA MET GLU SER VAL LYS THR GLU SEQRES 19 Z 420 PRO VAL ASP ARG ARG MET ILE PHE VAL THR ASN HIS ALA SEQRES 20 Z 420 THR ASP MET HIS LEU ILE GLY GLU GLU GLU VAL HIS ARG SEQRES 21 Z 420 LEU GLU ASN TYR ARG SER TYR ARG LEU ARG GLY ARG VAL SEQRES 22 Z 420 THR LEU GLU PRO TYR ASP ILE GLU GLY GLY HIS VAL PHE SEQRES 23 Z 420 PHE GLU ILE ASP THR LYS PHE GLY SER VAL LYS CYS ALA SEQRES 24 Z 420 ALA PHE GLU PRO THR LYS GLN PHE ARG ASN VAL ILE ARG SEQRES 25 Z 420 LEU LEU ARG LYS GLY ASP VAL VAL GLU VAL TYR GLY SER SEQRES 26 Z 420 MET LYS LYS ASP THR ILE ASN LEU GLU LYS ILE GLN ILE SEQRES 27 Z 420 VAL GLU LEU ALA GLU ILE TRP VAL GLU LYS ASN PRO ILE SEQRES 28 Z 420 CYS PRO SER CYS GLY ARG ARG MET GLU SER ALA GLY ARG SEQRES 29 Z 420 GLY GLN GLY PHE ARG CYS LYS LYS CYS ARG THR LYS ALA SEQRES 30 Z 420 ASP GLU LYS LEU ARG GLU LYS VAL GLU ARG GLU LEU GLN SEQRES 31 Z 420 PRO GLY PHE TYR GLU VAL PRO PRO SER ALA ARG ARG HIS SEQRES 32 Z 420 LEU SER LYS PRO LEU ILE ARG MET ASN VAL GLU GLY ARG SEQRES 33 Z 420 HIS ILE PHE ARG MODRES 4RVZ TPO Z 18 THR PHOSPHOTHREONINE HET TPO Z 18 11 HET ZN Z 501 1 HET ACP Z 502 31 HET MG Z 503 1 HET MG Z 504 1 HET ZNN Z 505 12 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM ZNN N-(4-AMINOBUTYL)-2-AZIDOACETAMIDE HETSYN TPO PHOSPHONOTHREONINE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 ACP C11 H18 N5 O12 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 ZNN C6 H13 N5 O HELIX 1 1 THR Z 19 LEU Z 33 1 15 HELIX 2 2 ASP Z 67 ALA Z 83 1 17 HELIX 3 3 GLU Z 100 LYS Z 104 5 5 HELIX 4 4 LEU Z 105 ASP Z 115 1 11 HELIX 5 5 GLN Z 118 PHE Z 130 1 13 HELIX 6 6 ARG Z 140 ALA Z 151 1 12 HELIX 7 7 ASP Z 176 TYR Z 188 1 13 HELIX 8 8 SER Z 220 SER Z 230 1 11 HELIX 9 9 GLU Z 256 VAL Z 258 5 3 HELIX 10 10 PHE Z 301 GLN Z 306 5 6 HELIX 11 11 PHE Z 307 LEU Z 313 1 7 HELIX 12 12 PRO Z 397 ARG Z 401 5 5 HELIX 13 13 PRO Z 407 MET Z 411 5 5 SHEET 1 A 8 HIS Z 133 ARG Z 135 0 SHEET 2 A 8 GLY Z 93 ASP Z 98 -1 N ALA Z 94 O LEU Z 134 SHEET 3 A 8 ARG Z 2 ASP Z 8 -1 N TRP Z 4 O VAL Z 97 SHEET 4 A 8 GLY Z 57 VAL Z 65 -1 O PHE Z 61 N VAL Z 5 SHEET 5 A 8 GLY Z 34 ARG Z 44 -1 N ARG Z 41 O SER Z 60 SHEET 6 A 8 ARG Z 239 THR Z 244 1 O VAL Z 243 N LEU Z 42 SHEET 7 A 8 THR Z 157 TYR Z 163 -1 N THR Z 157 O THR Z 244 SHEET 8 A 8 VAL Z 212 GLY Z 218 -1 O LEU Z 213 N ALA Z 162 SHEET 1 B 5 LEU Z 252 GLY Z 254 0 SHEET 2 B 5 ARG Z 265 VAL Z 273 1 O ARG Z 268 N ILE Z 253 SHEET 3 B 5 VAL Z 319 LYS Z 327 -1 O VAL Z 320 N GLY Z 271 SHEET 4 B 5 THR Z 330 GLU Z 340 -1 O GLU Z 334 N TYR Z 323 SHEET 5 B 5 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 1 C 5 TYR Z 278 ILE Z 280 0 SHEET 2 C 5 HIS Z 284 THR Z 291 -1 O HIS Z 284 N ILE Z 280 SHEET 3 C 5 GLY Z 294 ALA Z 300 -1 O VAL Z 296 N ILE Z 289 SHEET 4 C 5 THR Z 330 GLU Z 340 1 O ILE Z 331 N ALA Z 299 SHEET 5 C 5 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 1 D 4 LEU Z 252 GLY Z 254 0 SHEET 2 D 4 ARG Z 265 VAL Z 273 1 O ARG Z 268 N ILE Z 253 SHEET 3 D 4 HIS Z 284 THR Z 291 -1 O ASP Z 290 N ARG Z 272 SHEET 4 D 4 TYR Z 278 ILE Z 280 -1 N ILE Z 280 O HIS Z 284 SHEET 1 E 2 TRP Z 345 LYS Z 348 0 SHEET 2 E 2 LEU Z 381 LYS Z 384 -1 O GLU Z 383 N VAL Z 346 SHEET 1 F 3 GLU Z 360 SER Z 361 0 SHEET 2 F 3 PHE Z 368 CYS Z 370 -1 O ARG Z 369 N GLU Z 360 SHEET 3 F 3 THR Z 375 ALA Z 377 -1 O ALA Z 377 N PHE Z 368 LINK C CYS Z 17 N TPO Z 18 1555 1555 1.33 LINK C TPO Z 18 N THR Z 19 1555 1555 1.33 LINK OD2 ASP Z 8 MG MG Z 504 1555 1555 2.39 LINK OD1 ASP Z 9 MG MG Z 503 1555 1555 2.13 LINK O ASP Z 11 MG MG Z 503 1555 1555 2.62 LINK O2P TPO Z 18 MG MG Z 504 1555 1555 2.31 LINK SG CYS Z 352 ZN ZN Z 501 1555 1555 2.43 LINK SG CYS Z 355 ZN ZN Z 501 1555 1555 2.34 LINK SG CYS Z 370 ZN ZN Z 501 1555 1555 2.34 LINK SG CYS Z 373 ZN ZN Z 501 1555 1555 2.57 LINK O1A ACP Z 502 MG MG Z 503 1555 1555 2.60 LINK O1B ACP Z 502 MG MG Z 504 1555 1555 1.94 LINK O2A ACP Z 502 MG MG Z 504 1555 1555 2.99 CISPEP 1 THR Z 53 ARG Z 54 0 3.82 CISPEP 2 TYR Z 188 PRO Z 189 0 7.15 SITE 1 AC1 4 CYS Z 352 CYS Z 355 CYS Z 370 CYS Z 373 SITE 1 AC2 21 ASP Z 8 ASP Z 9 ASP Z 11 TPO Z 18 SITE 2 AC2 21 LEU Z 45 TYR Z 51 ARG Z 54 GLY Z 55 SITE 3 AC2 21 ASN Z 56 GLY Z 57 ALA Z 58 ALA Z 112 SITE 4 AC2 21 ASP Z 115 VAL Z 116 LEU Z 117 ARG Z 140 SITE 5 AC2 21 GLY Z 141 ILE Z 143 GLY Z 144 MG Z 503 SITE 6 AC2 21 MG Z 504 SITE 1 AC3 4 ASP Z 9 ASP Z 11 THR Z 90 ACP Z 502 SITE 1 AC4 6 ASP Z 8 ASP Z 9 TPO Z 18 GLY Z 57 SITE 2 AC4 6 ALA Z 58 ACP Z 502 SITE 1 AC5 8 GLU Z 159 ASP Z 193 ASN Z 194 VAL Z 203 SITE 2 AC5 8 CYS Z 204 GLY Z 215 ARG Z 217 SER Z 399 CRYST1 69.623 69.623 211.269 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004733 0.00000