HEADER HYDROLASE 01-DEC-14 4RW3 TITLE STRUCTURAL INSIGHTS INTO SUBSTRATE BINDING OF BROWN SPIDER VENOM CLASS TITLE 2 II PHOSPHOLIPASES D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE D LISICTOX-ALPHAIA1BII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLD, DERMONECROTIC TOXIN, LOXTOX I4, SPHINGOMYELIN COMPND 5 PHOSPHODIESTERASE D 1, SMD 1, SMASE D 1, SPHINGOMYELINASE D 1; COMPND 6 EC: 3.1.4.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOXOSCELES INTERMEDIA; SOURCE 3 ORGANISM_COMMON: BROWN SPIDER; SOURCE 4 ORGANISM_TAXID: 58218; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM-BARREL FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.CORONADO,A.ULLAH,L.S.DA SILVA,D.CHAVES-MOREIRA,L.VUITIKA, AUTHOR 2 O.M.CHAIM,S.S.VEIGA,J.CHAHINE,M.T.MURAKAMI,R.K.ARNI REVDAT 3 20-SEP-23 4RW3 1 REMARK SEQADV SSBOND LINK REVDAT 2 16-DEC-15 4RW3 1 JRNL REVDAT 1 03-JUN-15 4RW3 0 JRNL AUTH M.A.CORONADO,A.ULLAH,L.S.DA SILVA,D.CHAVES-MOREIRA, JRNL AUTH 2 L.VUITIKA,O.M.CHAIM,S.S.VEIGA,J.CHAHINE,M.T.MURAKAMI, JRNL AUTH 3 R.K.ARNI JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE BINDING OF BROWN SPIDER JRNL TITL 2 VENOM CLASS II PHOSPHOLIPASES D. JRNL REF CURR PROTEIN PEPT SCI V. 16 768 2015 JRNL REFN JRNL PMID 25961401 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2417 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3248 ; 1.343 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 5.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;36.200 ;24.701 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;12.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1831 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 0.899 ; 1.668 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 1.435 ; 2.495 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 1.385 ; 2.059 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3929 ; 5.238 ;15.575 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7,5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3RLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 7.5, 40% PEG 200, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.65000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 LEU A 0 REMARK 465 GLU A 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 85 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 223 O7 IPD A 304 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 32 OE2 REMARK 620 2 ASP A 34 OD1 102.1 REMARK 620 3 ASP A 92 OD2 94.5 88.7 REMARK 620 4 IPD A 304 O5 152.4 100.3 101.8 REMARK 620 5 IPD A 304 O6 58.4 155.5 79.0 102.9 REMARK 620 6 HOH A 410 O 92.3 87.9 172.9 72.6 106.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SHV A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DKA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DKA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDA A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RW5 RELATED DB: PDB DBREF 4RW3 A 2 280 UNP P0CE82 A1HB2_LOXIN 24 302 SEQADV 4RW3 MET A -21 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 GLY A -20 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 SER A -19 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 SER A -18 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -17 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -16 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -15 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -14 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -13 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -12 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 SER A -11 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 SER A -10 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 GLY A -9 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 LEU A -8 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 VAL A -7 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 PRO A -6 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 ARG A -5 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 GLY A -4 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 SER A -3 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 HIS A -2 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 MET A -1 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 LEU A 0 UNP P0CE82 EXPRESSION TAG SEQADV 4RW3 GLU A 1 UNP P0CE82 EXPRESSION TAG SEQRES 1 A 302 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 302 LEU VAL PRO ARG GLY SER HIS MET LEU GLU GLY ASN ARG SEQRES 3 A 302 ARG PRO ILE TRP ILE MET GLY HIS MET VAL ASN ALA ILE SEQRES 4 A 302 GLY GLN ILE ASP GLU PHE VAL ASN LEU GLY ALA ASN SER SEQRES 5 A 302 ILE GLU THR ASP VAL SER PHE ASP ASP ASN ALA ASN PRO SEQRES 6 A 302 GLU TYR THR TYR HIS GLY ILE PRO CYS ASP CYS GLY ARG SEQRES 7 A 302 ASN CYS LYS LYS TYR GLU ASN PHE ASN ASP PHE LEU LYS SEQRES 8 A 302 GLY LEU ARG SER ALA THR THR PRO GLY ASN SER LYS TYR SEQRES 9 A 302 GLN GLU LYS LEU VAL LEU VAL VAL PHE ASP LEU LYS THR SEQRES 10 A 302 GLY SER LEU TYR ASP ASN GLN ALA ASN ASP ALA GLY LYS SEQRES 11 A 302 LYS LEU ALA LYS ASN LEU LEU GLN HIS TYR TRP ASN ASN SEQRES 12 A 302 GLY ASN ASN GLY GLY ARG ALA TYR ILE VAL LEU SER ILE SEQRES 13 A 302 PRO ASP LEU ASN HIS TYR PRO LEU ILE LYS GLY PHE LYS SEQRES 14 A 302 ASP GLN LEU THR LYS ASP GLY HIS PRO GLU LEU MET ASP SEQRES 15 A 302 LYS VAL GLY HIS ASP PHE SER GLY ASN ASP ASP ILE GLY SEQRES 16 A 302 ASP VAL GLY LYS ALA TYR LYS LYS ALA GLY ILE THR GLY SEQRES 17 A 302 HIS ILE TRP GLN SER ASP GLY ILE THR ASN CYS LEU PRO SEQRES 18 A 302 ARG GLY LEU SER ARG VAL ASN ALA ALA VAL ALA ASN ARG SEQRES 19 A 302 ASP SER ALA ASN GLY PHE ILE ASN LYS VAL TYR TYR TRP SEQRES 20 A 302 THR VAL ASP LYS ARG SER THR THR ARG ASP ALA LEU ASP SEQRES 21 A 302 ALA GLY VAL ASP GLY ILE MET THR ASN TYR PRO ASP VAL SEQRES 22 A 302 ILE THR ASP VAL LEU ASN GLU ALA ALA TYR LYS LYS LYS SEQRES 23 A 302 PHE ARG VAL ALA THR TYR ASP ASP ASN PRO TRP VAL THR SEQRES 24 A 302 PHE LYS LYS HET MG A 301 1 HET PEG A 302 7 HET PEG A 303 7 HET IPD A 304 16 HET GOL A 305 6 HET OCA A 306 10 HET SHV A 307 9 HET DKA A 308 12 HET PLM A 309 18 HET PLM A 310 18 HET PLM A 311 18 HET DKA A 312 12 HET TDA A 313 15 HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM IPD D-MYO-INOSITOL-1-PHOSPHATE HETNAM GOL GLYCEROL HETNAM OCA OCTANOIC ACID (CAPRYLIC ACID) HETNAM SHV HEPTANOIC ACID HETNAM DKA DECANOIC ACID HETNAM PLM PALMITIC ACID HETNAM TDA N-TRIDECANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 IPD C6 H11 O9 P 2- FORMUL 6 GOL C3 H8 O3 FORMUL 7 OCA C8 H16 O2 FORMUL 8 SHV C7 H14 O2 FORMUL 9 DKA 2(C10 H20 O2) FORMUL 10 PLM 3(C16 H32 O2) FORMUL 14 TDA C13 H26 O2 FORMUL 15 HOH *168(H2 O) HELIX 1 1 GLY A 18 LEU A 26 1 9 HELIX 2 2 ASN A 63 THR A 76 1 14 HELIX 3 3 THR A 95 LEU A 98 5 4 HELIX 4 4 TYR A 99 ASN A 101 5 3 HELIX 5 5 GLN A 102 TYR A 118 1 17 HELIX 6 6 TRP A 119 ASN A 123 5 5 HELIX 7 7 ASP A 136 HIS A 139 5 4 HELIX 8 8 TYR A 140 ASP A 153 1 14 HELIX 9 9 HIS A 155 ASP A 160 5 6 HELIX 10 10 ASP A 171 GLY A 183 1 13 HELIX 11 11 LEU A 202 ASP A 213 1 12 HELIX 12 12 LYS A 229 GLY A 240 1 12 HELIX 13 13 TYR A 248 ASN A 257 1 10 HELIX 14 14 GLU A 258 LYS A 263 1 6 SHEET 1 A 8 VAL A 162 PHE A 166 0 SHEET 2 A 8 TYR A 129 ILE A 134 1 N ILE A 134 O ASP A 165 SHEET 3 A 8 LEU A 88 LEU A 93 1 N VAL A 89 O VAL A 131 SHEET 4 A 8 SER A 30 VAL A 35 1 N THR A 33 O ASP A 92 SHEET 5 A 8 ARG A 5 GLY A 11 1 N GLY A 11 O SER A 30 SHEET 6 A 8 GLY A 243 THR A 246 1 O ILE A 244 N MET A 10 SHEET 7 A 8 LYS A 221 TRP A 225 1 N TYR A 224 O MET A 245 SHEET 8 A 8 TRP A 189 GLY A 193 1 N GLN A 190 O LYS A 221 SHEET 1 B 6 VAL A 162 PHE A 166 0 SHEET 2 B 6 TYR A 129 ILE A 134 1 N ILE A 134 O ASP A 165 SHEET 3 B 6 LEU A 88 LEU A 93 1 N VAL A 89 O VAL A 131 SHEET 4 B 6 SER A 30 VAL A 35 1 N THR A 33 O ASP A 92 SHEET 5 B 6 ARG A 5 GLY A 11 1 N GLY A 11 O SER A 30 SHEET 6 B 6 PHE A 265 VAL A 267 1 O ARG A 266 N ILE A 7 SSBOND 1 CYS A 52 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 54 CYS A 197 1555 1555 2.06 LINK OE2 GLU A 32 MG MG A 301 1555 1555 2.00 LINK OD1 ASP A 34 MG MG A 301 1555 1555 2.02 LINK OD2 ASP A 92 MG MG A 301 1555 1555 2.13 LINK MG MG A 301 O5 IPD A 304 1555 1555 1.80 LINK MG MG A 301 O6 IPD A 304 1555 1555 2.58 LINK MG MG A 301 O HOH A 410 1555 1555 2.10 CISPEP 1 ILE A 50 PRO A 51 0 -3.91 CISPEP 2 TRP A 225 THR A 226 0 -22.51 SITE 1 AC1 5 GLU A 32 ASP A 34 ASP A 92 IPD A 304 SITE 2 AC1 5 HOH A 410 SITE 1 AC2 5 GLY A 122 ASN A 123 GLY A 201 LEU A 202 SITE 2 AC2 5 SER A 203 SITE 1 AC3 1 TYR A 45 SITE 1 AC4 15 HIS A 12 GLU A 32 ASP A 34 HIS A 48 SITE 2 AC4 15 ASP A 92 LYS A 94 SER A 167 TYR A 223 SITE 3 AC4 15 TRP A 225 MG A 301 HOH A 410 HOH A 441 SITE 4 AC4 15 HOH A 474 HOH A 485 HOH A 506 SITE 1 AC5 3 GLY A 168 ASN A 169 ASP A 170 SITE 1 AC6 4 ALA A 259 LYS A 263 PLM A 310 HOH A 422 SITE 1 AC7 3 GLY A 176 ILE A 184 PHE A 218 SITE 1 AC8 2 PRO A 51 CYS A 52 SITE 1 AC9 4 ASN A 196 ASP A 228 LYS A 229 TYR A 248 SITE 1 BC1 3 ASN A 257 LYS A 262 OCA A 306 SITE 1 BC2 5 ASN A 40 ASP A 105 LYS A 108 LYS A 109 SITE 2 BC2 5 LYS A 112 SITE 1 BC3 3 LYS A 147 ILE A 184 HOH A 469 SITE 1 BC4 3 ASN A 138 TYR A 140 LYS A 181 CRYST1 49.810 49.300 56.300 90.00 105.83 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020076 0.000000 0.005692 0.00000 SCALE2 0.000000 0.020284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018462 0.00000