data_4RW5 # _entry.id 4RW5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RW5 RCSB RCSB087869 WWPDB D_1000087869 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4RW3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RW5 _pdbx_database_status.recvd_initial_deposition_date 2014-12-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coronado, M.A.' 1 'Ullah, A.' 2 'da Silva, L.S.' 3 'Chaves-Moreira, D.' 4 'Vuitika, L.' 5 'Chaim, O.M.' 6 'Veiga, S.S.' 7 'Chahine, J.' 8 'Murakami, M.T.' 9 'Arni, R.K.' 10 # _citation.id primary _citation.title 'Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.' _citation.journal_abbrev 'Curr Protein Pept Sci' _citation.journal_volume 16 _citation.page_first 768 _citation.page_last 774 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25961401 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Coronado, M.A.' 1 primary 'Ullah, A.' 2 primary 'da Silva, L.S.' 3 primary 'Chaves-Moreira, D.' 4 primary 'Vuitika, L.' 5 primary 'Chaim, O.M.' 6 primary 'Veiga, S.S.' 7 primary 'Chahine, J.' 8 primary 'Murakami, M.T.' 9 primary 'Arni, R.K.' 10 # _cell.entry_id 4RW5 _cell.length_a 49.761 _cell.length_b 49.341 _cell.length_c 56.152 _cell.angle_alpha 90.00 _cell.angle_beta 105.71 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RW5 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phospholipase D LiSicTox-alphaIA1bii' 33672.625 1 3.1.4.4 H12A ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'PALMITIC ACID' 256.424 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'N-TRIDECANOIC ACID' 214.344 1 ? ? ? ? 6 non-polymer syn 'OCTANOIC ACID (CAPRYLIC ACID)' 144.211 1 ? ? ? ? 7 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PLD, Dermonecrotic toxin, Loxtox i4, Sphingomyelin phosphodiesterase D 1, SMD 1, SMase D 1, Sphingomyelinase D 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMLEGNRRPIWIMGAMVNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNC KKYENFNDFLKGLRSATTPGNSKYQEKLVLVVFDLKTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLN HYPLIKGFKDQLTKDGHPELMDKVGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGITNCLPRGLSRVNAAVANRDSANGF INKVYYWTVDKRSTTRDALDAGVDGIMTNYPDVITDVLNEAAYKKKFRVATYDDNPWVTFKK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMLEGNRRPIWIMGAMVNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNC KKYENFNDFLKGLRSATTPGNSKYQEKLVLVVFDLKTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLN HYPLIKGFKDQLTKDGHPELMDKVGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGITNCLPRGLSRVNAAVANRDSANGF INKVYYWTVDKRSTTRDALDAGVDGIMTNYPDVITDVLNEAAYKKKFRVATYDDNPWVTFKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 LEU n 1 23 GLU n 1 24 GLY n 1 25 ASN n 1 26 ARG n 1 27 ARG n 1 28 PRO n 1 29 ILE n 1 30 TRP n 1 31 ILE n 1 32 MET n 1 33 GLY n 1 34 ALA n 1 35 MET n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ILE n 1 40 GLY n 1 41 GLN n 1 42 ILE n 1 43 ASP n 1 44 GLU n 1 45 PHE n 1 46 VAL n 1 47 ASN n 1 48 LEU n 1 49 GLY n 1 50 ALA n 1 51 ASN n 1 52 SER n 1 53 ILE n 1 54 GLU n 1 55 THR n 1 56 ASP n 1 57 VAL n 1 58 SER n 1 59 PHE n 1 60 ASP n 1 61 ASP n 1 62 ASN n 1 63 ALA n 1 64 ASN n 1 65 PRO n 1 66 GLU n 1 67 TYR n 1 68 THR n 1 69 TYR n 1 70 HIS n 1 71 GLY n 1 72 ILE n 1 73 PRO n 1 74 CYS n 1 75 ASP n 1 76 CYS n 1 77 GLY n 1 78 ARG n 1 79 ASN n 1 80 CYS n 1 81 LYS n 1 82 LYS n 1 83 TYR n 1 84 GLU n 1 85 ASN n 1 86 PHE n 1 87 ASN n 1 88 ASP n 1 89 PHE n 1 90 LEU n 1 91 LYS n 1 92 GLY n 1 93 LEU n 1 94 ARG n 1 95 SER n 1 96 ALA n 1 97 THR n 1 98 THR n 1 99 PRO n 1 100 GLY n 1 101 ASN n 1 102 SER n 1 103 LYS n 1 104 TYR n 1 105 GLN n 1 106 GLU n 1 107 LYS n 1 108 LEU n 1 109 VAL n 1 110 LEU n 1 111 VAL n 1 112 VAL n 1 113 PHE n 1 114 ASP n 1 115 LEU n 1 116 LYS n 1 117 THR n 1 118 GLY n 1 119 SER n 1 120 LEU n 1 121 TYR n 1 122 ASP n 1 123 ASN n 1 124 GLN n 1 125 ALA n 1 126 ASN n 1 127 ASP n 1 128 ALA n 1 129 GLY n 1 130 LYS n 1 131 LYS n 1 132 LEU n 1 133 ALA n 1 134 LYS n 1 135 ASN n 1 136 LEU n 1 137 LEU n 1 138 GLN n 1 139 HIS n 1 140 TYR n 1 141 TRP n 1 142 ASN n 1 143 ASN n 1 144 GLY n 1 145 ASN n 1 146 ASN n 1 147 GLY n 1 148 GLY n 1 149 ARG n 1 150 ALA n 1 151 TYR n 1 152 ILE n 1 153 VAL n 1 154 LEU n 1 155 SER n 1 156 ILE n 1 157 PRO n 1 158 ASP n 1 159 LEU n 1 160 ASN n 1 161 HIS n 1 162 TYR n 1 163 PRO n 1 164 LEU n 1 165 ILE n 1 166 LYS n 1 167 GLY n 1 168 PHE n 1 169 LYS n 1 170 ASP n 1 171 GLN n 1 172 LEU n 1 173 THR n 1 174 LYS n 1 175 ASP n 1 176 GLY n 1 177 HIS n 1 178 PRO n 1 179 GLU n 1 180 LEU n 1 181 MET n 1 182 ASP n 1 183 LYS n 1 184 VAL n 1 185 GLY n 1 186 HIS n 1 187 ASP n 1 188 PHE n 1 189 SER n 1 190 GLY n 1 191 ASN n 1 192 ASP n 1 193 ASP n 1 194 ILE n 1 195 GLY n 1 196 ASP n 1 197 VAL n 1 198 GLY n 1 199 LYS n 1 200 ALA n 1 201 TYR n 1 202 LYS n 1 203 LYS n 1 204 ALA n 1 205 GLY n 1 206 ILE n 1 207 THR n 1 208 GLY n 1 209 HIS n 1 210 ILE n 1 211 TRP n 1 212 GLN n 1 213 SER n 1 214 ASP n 1 215 GLY n 1 216 ILE n 1 217 THR n 1 218 ASN n 1 219 CYS n 1 220 LEU n 1 221 PRO n 1 222 ARG n 1 223 GLY n 1 224 LEU n 1 225 SER n 1 226 ARG n 1 227 VAL n 1 228 ASN n 1 229 ALA n 1 230 ALA n 1 231 VAL n 1 232 ALA n 1 233 ASN n 1 234 ARG n 1 235 ASP n 1 236 SER n 1 237 ALA n 1 238 ASN n 1 239 GLY n 1 240 PHE n 1 241 ILE n 1 242 ASN n 1 243 LYS n 1 244 VAL n 1 245 TYR n 1 246 TYR n 1 247 TRP n 1 248 THR n 1 249 VAL n 1 250 ASP n 1 251 LYS n 1 252 ARG n 1 253 SER n 1 254 THR n 1 255 THR n 1 256 ARG n 1 257 ASP n 1 258 ALA n 1 259 LEU n 1 260 ASP n 1 261 ALA n 1 262 GLY n 1 263 VAL n 1 264 ASP n 1 265 GLY n 1 266 ILE n 1 267 MET n 1 268 THR n 1 269 ASN n 1 270 TYR n 1 271 PRO n 1 272 ASP n 1 273 VAL n 1 274 ILE n 1 275 THR n 1 276 ASP n 1 277 VAL n 1 278 LEU n 1 279 ASN n 1 280 GLU n 1 281 ALA n 1 282 ALA n 1 283 TYR n 1 284 LYS n 1 285 LYS n 1 286 LYS n 1 287 PHE n 1 288 ARG n 1 289 VAL n 1 290 ALA n 1 291 THR n 1 292 TYR n 1 293 ASP n 1 294 ASP n 1 295 ASN n 1 296 PRO n 1 297 TRP n 1 298 VAL n 1 299 THR n 1 300 PHE n 1 301 LYS n 1 302 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Brown spider' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Loxosceles intermedia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 58218 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1HB2_LOXIN _struct_ref.pdbx_db_accession P0CE82 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GNRRPIWIMGHMVNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKKYENFNDFLKGLRSATTPGNSK YQEKLVLVVFDLKTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDK VGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGITNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDALDAGV DGIMTNYPDVITDVLNEAAYKKKFRVATYDDNPWVTFKK ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RW5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 302 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0CE82 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 302 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RW5 MET A 1 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -21 1 1 4RW5 GLY A 2 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -20 2 1 4RW5 SER A 3 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -19 3 1 4RW5 SER A 4 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -18 4 1 4RW5 HIS A 5 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -17 5 1 4RW5 HIS A 6 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -16 6 1 4RW5 HIS A 7 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -15 7 1 4RW5 HIS A 8 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -14 8 1 4RW5 HIS A 9 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -13 9 1 4RW5 HIS A 10 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -12 10 1 4RW5 SER A 11 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -11 11 1 4RW5 SER A 12 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -10 12 1 4RW5 GLY A 13 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -9 13 1 4RW5 LEU A 14 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -8 14 1 4RW5 VAL A 15 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -7 15 1 4RW5 PRO A 16 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -6 16 1 4RW5 ARG A 17 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -5 17 1 4RW5 GLY A 18 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -4 18 1 4RW5 SER A 19 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -3 19 1 4RW5 HIS A 20 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -2 20 1 4RW5 MET A 21 ? UNP P0CE82 ? ? 'EXPRESSION TAG' -1 21 1 4RW5 LEU A 22 ? UNP P0CE82 ? ? 'EXPRESSION TAG' 0 22 1 4RW5 GLU A 23 ? UNP P0CE82 ? ? 'EXPRESSION TAG' 1 23 1 4RW5 ALA A 34 ? UNP P0CE82 HIS 34 'ENGINEERED MUTATION' 12 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OCA non-polymer . 'OCTANOIC ACID (CAPRYLIC ACID)' ? 'C8 H16 O2' 144.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLM non-polymer . 'PALMITIC ACID' ? 'C16 H32 O2' 256.424 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TDA non-polymer . 'N-TRIDECANOIC ACID' ? 'C13 H26 O2' 214.344 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RW5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl pH 7.5, 40% PEG 200, VAPOR DIFFUSION, HANGING DROP, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) double-crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.458 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.458 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RW5 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.49 _reflns.d_resolution_high 1.6 _reflns.number_obs ? _reflns.number_all 47089 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RW5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29302 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.49 _refine.ls_d_res_high 1.64 _refine.ls_percent_reflns_obs 95.54 _refine.ls_R_factor_obs 0.18156 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17965 _refine.ls_R_factor_R_free 0.21592 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1569 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 24.910 _refine.aniso_B[1][1] -0.10 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.17 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.105 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.072 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.097 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2183 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 2317 _refine_hist.d_res_high 1.64 _refine_hist.d_res_low 24.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.019 ? 2333 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.035 1.946 ? 3161 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.254 5.000 ? 293 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.861 24.870 ? 115 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.442 15.000 ? 366 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.852 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.151 0.200 ? 329 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 1824 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.177 2.293 ? 1151 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.881 3.433 ? 1451 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.164 2.599 ? 1182 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.058 20.404 ? 3705 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.640 _refine_ls_shell.d_res_low 1.682 _refine_ls_shell.number_reflns_R_work 1694 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 75.78 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4RW5 _struct.title 'Structural insights into substrate binding of brown spider venom class II phospholipases D' _struct.pdbx_descriptor 'Phospholipase D LiSicTox-alphaIA1bii (E.C.3.1.4.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RW5 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'TIM-barrel fold, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 38 ? LEU A 48 ? ALA A 16 LEU A 26 1 ? 11 HELX_P HELX_P2 2 PHE A 86 ? THR A 97 ? PHE A 64 THR A 75 1 ? 12 HELX_P HELX_P3 3 THR A 117 ? LEU A 120 ? THR A 95 LEU A 98 5 ? 4 HELX_P HELX_P4 4 TYR A 121 ? ASN A 123 ? TYR A 99 ASN A 101 5 ? 3 HELX_P HELX_P5 5 GLN A 124 ? TYR A 140 ? GLN A 102 TYR A 118 1 ? 17 HELX_P HELX_P6 6 TRP A 141 ? ASN A 145 ? TRP A 119 ASN A 123 5 ? 5 HELX_P HELX_P7 7 ASP A 158 ? HIS A 161 ? ASP A 136 HIS A 139 5 ? 4 HELX_P HELX_P8 8 TYR A 162 ? ASP A 175 ? TYR A 140 ASP A 153 1 ? 14 HELX_P HELX_P9 9 HIS A 177 ? ASP A 182 ? HIS A 155 ASP A 160 5 ? 6 HELX_P HELX_P10 10 ASP A 193 ? GLY A 205 ? ASP A 171 GLY A 183 1 ? 13 HELX_P HELX_P11 11 LEU A 224 ? ASP A 235 ? LEU A 202 ASP A 213 1 ? 12 HELX_P HELX_P12 12 LYS A 251 ? ALA A 261 ? LYS A 229 ALA A 239 1 ? 11 HELX_P HELX_P13 13 TYR A 270 ? ASN A 279 ? TYR A 248 ASN A 257 1 ? 10 HELX_P HELX_P14 14 GLU A 280 ? LYS A 285 ? GLU A 258 LYS A 263 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 74 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 52 A CYS 58 1_555 ? ? ? ? ? ? ? 2.024 ? disulf2 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 219 SG ? ? A CYS 54 A CYS 197 1_555 ? ? ? ? ? ? ? 2.115 ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 F OCA . O1 ? ? A MG 301 A OCA 305 1_555 ? ? ? ? ? ? ? 1.991 ? metalc2 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 B MG . MG ? ? A GLU 32 A MG 301 1_555 ? ? ? ? ? ? ? 1.994 ? metalc3 metalc ? ? A ASP 114 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 92 A MG 301 1_555 ? ? ? ? ? ? ? 2.024 ? metalc4 metalc ? ? A ASP 56 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 34 A MG 301 1_555 ? ? ? ? ? ? ? 2.037 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 301 A HOH 410 1_555 ? ? ? ? ? ? ? 2.200 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 72 A . ? ILE 50 A PRO 73 A ? PRO 51 A 1 -2.48 2 TRP 247 A . ? TRP 225 A THR 248 A ? THR 226 A 1 -12.21 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 84 ? ASN A 85 ? GLU A 62 ASN A 63 A 2 PRO A 65 ? THR A 68 ? PRO A 43 THR A 46 A 3 SER A 52 ? PHE A 59 ? SER A 30 PHE A 37 A 4 ARG A 27 ? GLY A 33 ? ARG A 5 GLY A 11 A 5 GLY A 265 ? THR A 268 ? GLY A 243 THR A 246 A 6 LYS A 243 ? TRP A 247 ? LYS A 221 TRP A 225 A 7 TRP A 211 ? GLY A 215 ? TRP A 189 GLY A 193 B 1 VAL A 184 ? PHE A 188 ? VAL A 162 PHE A 166 B 2 TYR A 151 ? ILE A 156 ? TYR A 129 ILE A 134 B 3 LEU A 110 ? LEU A 115 ? LEU A 88 LEU A 93 B 4 SER A 52 ? PHE A 59 ? SER A 30 PHE A 37 B 5 ARG A 27 ? GLY A 33 ? ARG A 5 GLY A 11 B 6 PHE A 287 ? VAL A 289 ? PHE A 265 VAL A 267 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 84 ? O GLU A 62 N THR A 68 ? N THR A 46 A 2 3 O TYR A 67 ? O TYR A 45 N SER A 58 ? N SER A 36 A 3 4 O SER A 52 ? O SER A 30 N GLY A 33 ? N GLY A 11 A 4 5 N MET A 32 ? N MET A 10 O ILE A 266 ? O ILE A 244 A 5 6 O MET A 267 ? O MET A 245 N TYR A 246 ? N TYR A 224 A 6 7 O TYR A 245 ? O TYR A 223 N GLN A 212 ? N GLN A 190 B 1 2 O GLY A 185 ? O GLY A 163 N ILE A 152 ? N ILE A 130 B 2 3 O VAL A 153 ? O VAL A 131 N VAL A 111 ? N VAL A 89 B 3 4 O VAL A 112 ? O VAL A 90 N THR A 55 ? N THR A 33 B 4 5 O SER A 52 ? O SER A 30 N GLY A 33 ? N GLY A 11 B 5 6 N ILE A 29 ? N ILE A 7 O ARG A 288 ? O ARG A 266 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 301' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PLM A 302' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 303' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE TDA A 304' AC5 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE OCA A 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 54 ? GLU A 32 . ? 1_555 ? 2 AC1 5 ASP A 56 ? ASP A 34 . ? 1_555 ? 3 AC1 5 ASP A 114 ? ASP A 92 . ? 1_555 ? 4 AC1 5 OCA F . ? OCA A 305 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 410 . ? 1_555 ? 6 AC2 5 ASN A 62 ? ASN A 40 . ? 1_555 ? 7 AC2 5 ASP A 127 ? ASP A 105 . ? 1_555 ? 8 AC2 5 LYS A 130 ? LYS A 108 . ? 1_555 ? 9 AC2 5 LYS A 131 ? LYS A 109 . ? 1_555 ? 10 AC2 5 GLN A 171 ? GLN A 149 . ? 1_555 ? 11 AC3 2 TYR A 121 ? TYR A 99 . ? 1_555 ? 12 AC3 2 HOH G . ? HOH A 445 . ? 1_555 ? 13 AC4 4 ASN A 160 ? ASN A 138 . ? 1_555 ? 14 AC4 4 TYR A 162 ? TYR A 140 . ? 1_555 ? 15 AC4 4 LYS A 203 ? LYS A 181 . ? 1_555 ? 16 AC4 4 ASP A 272 ? ASP A 250 . ? 1_545 ? 17 AC5 12 GLU A 54 ? GLU A 32 . ? 1_555 ? 18 AC5 12 ASP A 56 ? ASP A 34 . ? 1_555 ? 19 AC5 12 HIS A 70 ? HIS A 48 . ? 1_555 ? 20 AC5 12 ASP A 114 ? ASP A 92 . ? 1_555 ? 21 AC5 12 LYS A 116 ? LYS A 94 . ? 1_555 ? 22 AC5 12 SER A 155 ? SER A 133 . ? 1_555 ? 23 AC5 12 SER A 189 ? SER A 167 . ? 1_555 ? 24 AC5 12 TYR A 245 ? TYR A 223 . ? 1_555 ? 25 AC5 12 TRP A 247 ? TRP A 225 . ? 1_555 ? 26 AC5 12 MET A 267 ? MET A 245 . ? 1_555 ? 27 AC5 12 MG B . ? MG A 301 . ? 1_555 ? 28 AC5 12 HOH G . ? HOH A 410 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RW5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RW5 _atom_sites.fract_transf_matrix[1][1] 0.020096 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005653 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018500 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 GLY 13 -9 ? ? ? A . n A 1 14 LEU 14 -8 ? ? ? A . n A 1 15 VAL 15 -7 ? ? ? A . n A 1 16 PRO 16 -6 ? ? ? A . n A 1 17 ARG 17 -5 ? ? ? A . n A 1 18 GLY 18 -4 ? ? ? A . n A 1 19 SER 19 -3 ? ? ? A . n A 1 20 HIS 20 -2 ? ? ? A . n A 1 21 MET 21 -1 ? ? ? A . n A 1 22 LEU 22 0 ? ? ? A . n A 1 23 GLU 23 1 ? ? ? A . n A 1 24 GLY 24 2 2 GLY GLY A . n A 1 25 ASN 25 3 3 ASN ASN A . n A 1 26 ARG 26 4 4 ARG ARG A . n A 1 27 ARG 27 5 5 ARG ARG A . n A 1 28 PRO 28 6 6 PRO PRO A . n A 1 29 ILE 29 7 7 ILE ILE A . n A 1 30 TRP 30 8 8 TRP TRP A . n A 1 31 ILE 31 9 9 ILE ILE A . n A 1 32 MET 32 10 10 MET MET A . n A 1 33 GLY 33 11 11 GLY GLY A . n A 1 34 ALA 34 12 12 ALA ALA A . n A 1 35 MET 35 13 13 MET MET A . n A 1 36 VAL 36 14 14 VAL VAL A . n A 1 37 ASN 37 15 15 ASN ASN A . n A 1 38 ALA 38 16 16 ALA ALA A . n A 1 39 ILE 39 17 17 ILE ILE A . n A 1 40 GLY 40 18 18 GLY GLY A . n A 1 41 GLN 41 19 19 GLN GLN A . n A 1 42 ILE 42 20 20 ILE ILE A . n A 1 43 ASP 43 21 21 ASP ASP A . n A 1 44 GLU 44 22 22 GLU GLU A . n A 1 45 PHE 45 23 23 PHE PHE A . n A 1 46 VAL 46 24 24 VAL VAL A . n A 1 47 ASN 47 25 25 ASN ASN A . n A 1 48 LEU 48 26 26 LEU LEU A . n A 1 49 GLY 49 27 27 GLY GLY A . n A 1 50 ALA 50 28 28 ALA ALA A . n A 1 51 ASN 51 29 29 ASN ASN A . n A 1 52 SER 52 30 30 SER SER A . n A 1 53 ILE 53 31 31 ILE ILE A . n A 1 54 GLU 54 32 32 GLU GLU A . n A 1 55 THR 55 33 33 THR THR A . n A 1 56 ASP 56 34 34 ASP ASP A . n A 1 57 VAL 57 35 35 VAL VAL A . n A 1 58 SER 58 36 36 SER SER A . n A 1 59 PHE 59 37 37 PHE PHE A . n A 1 60 ASP 60 38 38 ASP ASP A . n A 1 61 ASP 61 39 39 ASP ASP A . n A 1 62 ASN 62 40 40 ASN ASN A . n A 1 63 ALA 63 41 41 ALA ALA A . n A 1 64 ASN 64 42 42 ASN ASN A . n A 1 65 PRO 65 43 43 PRO PRO A . n A 1 66 GLU 66 44 44 GLU GLU A . n A 1 67 TYR 67 45 45 TYR TYR A . n A 1 68 THR 68 46 46 THR THR A . n A 1 69 TYR 69 47 47 TYR TYR A . n A 1 70 HIS 70 48 48 HIS HIS A . n A 1 71 GLY 71 49 49 GLY GLY A . n A 1 72 ILE 72 50 50 ILE ILE A . n A 1 73 PRO 73 51 51 PRO PRO A . n A 1 74 CYS 74 52 52 CYS CYS A . n A 1 75 ASP 75 53 53 ASP ASP A . n A 1 76 CYS 76 54 54 CYS CYS A . n A 1 77 GLY 77 55 55 GLY GLY A . n A 1 78 ARG 78 56 56 ARG ARG A . n A 1 79 ASN 79 57 57 ASN ASN A . n A 1 80 CYS 80 58 58 CYS CYS A . n A 1 81 LYS 81 59 59 LYS LYS A . n A 1 82 LYS 82 60 60 LYS LYS A . n A 1 83 TYR 83 61 61 TYR TYR A . n A 1 84 GLU 84 62 62 GLU GLU A . n A 1 85 ASN 85 63 63 ASN ASN A . n A 1 86 PHE 86 64 64 PHE PHE A . n A 1 87 ASN 87 65 65 ASN ASN A . n A 1 88 ASP 88 66 66 ASP ASP A . n A 1 89 PHE 89 67 67 PHE PHE A . n A 1 90 LEU 90 68 68 LEU LEU A . n A 1 91 LYS 91 69 69 LYS LYS A . n A 1 92 GLY 92 70 70 GLY GLY A . n A 1 93 LEU 93 71 71 LEU LEU A . n A 1 94 ARG 94 72 72 ARG ARG A . n A 1 95 SER 95 73 73 SER SER A . n A 1 96 ALA 96 74 74 ALA ALA A . n A 1 97 THR 97 75 75 THR THR A . n A 1 98 THR 98 76 76 THR THR A . n A 1 99 PRO 99 77 77 PRO PRO A . n A 1 100 GLY 100 78 78 GLY GLY A . n A 1 101 ASN 101 79 79 ASN ASN A . n A 1 102 SER 102 80 80 SER SER A . n A 1 103 LYS 103 81 81 LYS LYS A . n A 1 104 TYR 104 82 82 TYR TYR A . n A 1 105 GLN 105 83 83 GLN GLN A . n A 1 106 GLU 106 84 84 GLU GLU A . n A 1 107 LYS 107 85 85 LYS LYS A . n A 1 108 LEU 108 86 86 LEU LEU A . n A 1 109 VAL 109 87 87 VAL VAL A . n A 1 110 LEU 110 88 88 LEU LEU A . n A 1 111 VAL 111 89 89 VAL VAL A . n A 1 112 VAL 112 90 90 VAL VAL A . n A 1 113 PHE 113 91 91 PHE PHE A . n A 1 114 ASP 114 92 92 ASP ASP A . n A 1 115 LEU 115 93 93 LEU LEU A . n A 1 116 LYS 116 94 94 LYS LYS A . n A 1 117 THR 117 95 95 THR THR A . n A 1 118 GLY 118 96 96 GLY GLY A . n A 1 119 SER 119 97 97 SER SER A . n A 1 120 LEU 120 98 98 LEU LEU A . n A 1 121 TYR 121 99 99 TYR TYR A . n A 1 122 ASP 122 100 100 ASP ASP A . n A 1 123 ASN 123 101 101 ASN ASN A . n A 1 124 GLN 124 102 102 GLN GLN A . n A 1 125 ALA 125 103 103 ALA ALA A . n A 1 126 ASN 126 104 104 ASN ASN A . n A 1 127 ASP 127 105 105 ASP ASP A . n A 1 128 ALA 128 106 106 ALA ALA A . n A 1 129 GLY 129 107 107 GLY GLY A . n A 1 130 LYS 130 108 108 LYS LYS A . n A 1 131 LYS 131 109 109 LYS LYS A . n A 1 132 LEU 132 110 110 LEU LEU A . n A 1 133 ALA 133 111 111 ALA ALA A . n A 1 134 LYS 134 112 112 LYS LYS A . n A 1 135 ASN 135 113 113 ASN ASN A . n A 1 136 LEU 136 114 114 LEU LEU A . n A 1 137 LEU 137 115 115 LEU LEU A . n A 1 138 GLN 138 116 116 GLN GLN A . n A 1 139 HIS 139 117 117 HIS HIS A . n A 1 140 TYR 140 118 118 TYR TYR A . n A 1 141 TRP 141 119 119 TRP TRP A . n A 1 142 ASN 142 120 120 ASN ASN A . n A 1 143 ASN 143 121 121 ASN ASN A . n A 1 144 GLY 144 122 122 GLY GLY A . n A 1 145 ASN 145 123 123 ASN ASN A . n A 1 146 ASN 146 124 124 ASN ASN A . n A 1 147 GLY 147 125 125 GLY GLY A . n A 1 148 GLY 148 126 126 GLY GLY A . n A 1 149 ARG 149 127 127 ARG ARG A . n A 1 150 ALA 150 128 128 ALA ALA A . n A 1 151 TYR 151 129 129 TYR TYR A . n A 1 152 ILE 152 130 130 ILE ILE A . n A 1 153 VAL 153 131 131 VAL VAL A . n A 1 154 LEU 154 132 132 LEU LEU A . n A 1 155 SER 155 133 133 SER SER A . n A 1 156 ILE 156 134 134 ILE ILE A . n A 1 157 PRO 157 135 135 PRO PRO A . n A 1 158 ASP 158 136 136 ASP ASP A . n A 1 159 LEU 159 137 137 LEU LEU A . n A 1 160 ASN 160 138 138 ASN ASN A . n A 1 161 HIS 161 139 139 HIS HIS A . n A 1 162 TYR 162 140 140 TYR TYR A . n A 1 163 PRO 163 141 141 PRO PRO A . n A 1 164 LEU 164 142 142 LEU LEU A . n A 1 165 ILE 165 143 143 ILE ILE A . n A 1 166 LYS 166 144 144 LYS LYS A . n A 1 167 GLY 167 145 145 GLY GLY A . n A 1 168 PHE 168 146 146 PHE PHE A . n A 1 169 LYS 169 147 147 LYS LYS A . n A 1 170 ASP 170 148 148 ASP ASP A . n A 1 171 GLN 171 149 149 GLN GLN A . n A 1 172 LEU 172 150 150 LEU LEU A . n A 1 173 THR 173 151 151 THR THR A . n A 1 174 LYS 174 152 152 LYS LYS A . n A 1 175 ASP 175 153 153 ASP ASP A . n A 1 176 GLY 176 154 154 GLY GLY A . n A 1 177 HIS 177 155 155 HIS HIS A . n A 1 178 PRO 178 156 156 PRO PRO A . n A 1 179 GLU 179 157 157 GLU GLU A . n A 1 180 LEU 180 158 158 LEU LEU A . n A 1 181 MET 181 159 159 MET MET A . n A 1 182 ASP 182 160 160 ASP ASP A . n A 1 183 LYS 183 161 161 LYS LYS A . n A 1 184 VAL 184 162 162 VAL VAL A . n A 1 185 GLY 185 163 163 GLY GLY A . n A 1 186 HIS 186 164 164 HIS HIS A . n A 1 187 ASP 187 165 165 ASP ASP A . n A 1 188 PHE 188 166 166 PHE PHE A . n A 1 189 SER 189 167 167 SER SER A . n A 1 190 GLY 190 168 168 GLY GLY A . n A 1 191 ASN 191 169 169 ASN ASN A . n A 1 192 ASP 192 170 170 ASP ASP A . n A 1 193 ASP 193 171 171 ASP ASP A . n A 1 194 ILE 194 172 172 ILE ILE A . n A 1 195 GLY 195 173 173 GLY GLY A . n A 1 196 ASP 196 174 174 ASP ASP A . n A 1 197 VAL 197 175 175 VAL VAL A . n A 1 198 GLY 198 176 176 GLY GLY A . n A 1 199 LYS 199 177 177 LYS LYS A . n A 1 200 ALA 200 178 178 ALA ALA A . n A 1 201 TYR 201 179 179 TYR TYR A . n A 1 202 LYS 202 180 180 LYS LYS A . n A 1 203 LYS 203 181 181 LYS LYS A . n A 1 204 ALA 204 182 182 ALA ALA A . n A 1 205 GLY 205 183 183 GLY GLY A . n A 1 206 ILE 206 184 184 ILE ILE A . n A 1 207 THR 207 185 185 THR THR A . n A 1 208 GLY 208 186 186 GLY GLY A . n A 1 209 HIS 209 187 187 HIS HIS A . n A 1 210 ILE 210 188 188 ILE ILE A . n A 1 211 TRP 211 189 189 TRP TRP A . n A 1 212 GLN 212 190 190 GLN GLN A . n A 1 213 SER 213 191 191 SER SER A . n A 1 214 ASP 214 192 192 ASP ASP A . n A 1 215 GLY 215 193 193 GLY GLY A . n A 1 216 ILE 216 194 194 ILE ILE A . n A 1 217 THR 217 195 195 THR THR A . n A 1 218 ASN 218 196 196 ASN ASN A . n A 1 219 CYS 219 197 197 CYS CYS A . n A 1 220 LEU 220 198 198 LEU LEU A . n A 1 221 PRO 221 199 199 PRO PRO A . n A 1 222 ARG 222 200 200 ARG ARG A . n A 1 223 GLY 223 201 201 GLY GLY A . n A 1 224 LEU 224 202 202 LEU LEU A . n A 1 225 SER 225 203 203 SER SER A . n A 1 226 ARG 226 204 204 ARG ARG A . n A 1 227 VAL 227 205 205 VAL VAL A . n A 1 228 ASN 228 206 206 ASN ASN A . n A 1 229 ALA 229 207 207 ALA ALA A . n A 1 230 ALA 230 208 208 ALA ALA A . n A 1 231 VAL 231 209 209 VAL VAL A . n A 1 232 ALA 232 210 210 ALA ALA A . n A 1 233 ASN 233 211 211 ASN ASN A . n A 1 234 ARG 234 212 212 ARG ARG A . n A 1 235 ASP 235 213 213 ASP ASP A . n A 1 236 SER 236 214 214 SER SER A . n A 1 237 ALA 237 215 215 ALA ALA A . n A 1 238 ASN 238 216 216 ASN ASN A . n A 1 239 GLY 239 217 217 GLY GLY A . n A 1 240 PHE 240 218 218 PHE PHE A . n A 1 241 ILE 241 219 219 ILE ILE A . n A 1 242 ASN 242 220 220 ASN ASN A . n A 1 243 LYS 243 221 221 LYS LYS A . n A 1 244 VAL 244 222 222 VAL VAL A . n A 1 245 TYR 245 223 223 TYR TYR A . n A 1 246 TYR 246 224 224 TYR TYR A . n A 1 247 TRP 247 225 225 TRP TRP A . n A 1 248 THR 248 226 226 THR THR A . n A 1 249 VAL 249 227 227 VAL VAL A . n A 1 250 ASP 250 228 228 ASP ASP A . n A 1 251 LYS 251 229 229 LYS LYS A . n A 1 252 ARG 252 230 230 ARG ARG A . n A 1 253 SER 253 231 231 SER SER A . n A 1 254 THR 254 232 232 THR THR A . n A 1 255 THR 255 233 233 THR THR A . n A 1 256 ARG 256 234 234 ARG ARG A . n A 1 257 ASP 257 235 235 ASP ASP A . n A 1 258 ALA 258 236 236 ALA ALA A . n A 1 259 LEU 259 237 237 LEU LEU A . n A 1 260 ASP 260 238 238 ASP ASP A . n A 1 261 ALA 261 239 239 ALA ALA A . n A 1 262 GLY 262 240 240 GLY GLY A . n A 1 263 VAL 263 241 241 VAL VAL A . n A 1 264 ASP 264 242 242 ASP ASP A . n A 1 265 GLY 265 243 243 GLY GLY A . n A 1 266 ILE 266 244 244 ILE ILE A . n A 1 267 MET 267 245 245 MET MET A . n A 1 268 THR 268 246 246 THR THR A . n A 1 269 ASN 269 247 247 ASN ASN A . n A 1 270 TYR 270 248 248 TYR TYR A . n A 1 271 PRO 271 249 249 PRO PRO A . n A 1 272 ASP 272 250 250 ASP ASP A . n A 1 273 VAL 273 251 251 VAL VAL A . n A 1 274 ILE 274 252 252 ILE ILE A . n A 1 275 THR 275 253 253 THR THR A . n A 1 276 ASP 276 254 254 ASP ASP A . n A 1 277 VAL 277 255 255 VAL VAL A . n A 1 278 LEU 278 256 256 LEU LEU A . n A 1 279 ASN 279 257 257 ASN ASN A . n A 1 280 GLU 280 258 258 GLU GLU A . n A 1 281 ALA 281 259 259 ALA ALA A . n A 1 282 ALA 282 260 260 ALA ALA A . n A 1 283 TYR 283 261 261 TYR TYR A . n A 1 284 LYS 284 262 262 LYS LYS A . n A 1 285 LYS 285 263 263 LYS LYS A . n A 1 286 LYS 286 264 264 LYS LYS A . n A 1 287 PHE 287 265 265 PHE PHE A . n A 1 288 ARG 288 266 266 ARG ARG A . n A 1 289 VAL 289 267 267 VAL VAL A . n A 1 290 ALA 290 268 268 ALA ALA A . n A 1 291 THR 291 269 269 THR THR A . n A 1 292 TYR 292 270 270 TYR TYR A . n A 1 293 ASP 293 271 271 ASP ASP A . n A 1 294 ASP 294 272 272 ASP ASP A . n A 1 295 ASN 295 273 273 ASN ASN A . n A 1 296 PRO 296 274 274 PRO PRO A . n A 1 297 TRP 297 275 275 TRP TRP A . n A 1 298 VAL 298 276 276 VAL VAL A . n A 1 299 THR 299 277 277 THR THR A . n A 1 300 PHE 300 278 278 PHE PHE A . n A 1 301 LYS 301 279 279 LYS LYS A . n A 1 302 LYS 302 280 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? F OCA . ? A OCA 305 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OE2 ? A GLU 54 ? A GLU 32 ? 1_555 164.8 ? 2 O1 ? F OCA . ? A OCA 305 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OD2 ? A ASP 114 ? A ASP 92 ? 1_555 89.3 ? 3 OE2 ? A GLU 54 ? A GLU 32 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OD2 ? A ASP 114 ? A ASP 92 ? 1_555 93.5 ? 4 O1 ? F OCA . ? A OCA 305 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OD1 ? A ASP 56 ? A ASP 34 ? 1_555 94.3 ? 5 OE2 ? A GLU 54 ? A GLU 32 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OD1 ? A ASP 56 ? A ASP 34 ? 1_555 100.5 ? 6 OD2 ? A ASP 114 ? A ASP 92 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 OD1 ? A ASP 56 ? A ASP 34 ? 1_555 91.3 ? 7 O1 ? F OCA . ? A OCA 305 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 90.2 ? 8 OE2 ? A GLU 54 ? A GLU 32 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 87.7 ? 9 OD2 ? A ASP 114 ? A ASP 92 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 177.2 ? 10 OD1 ? A ASP 56 ? A ASP 34 ? 1_555 MG ? B MG . ? A MG 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 85.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-06-03 2 'Structure model' 1 1 2015-12-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 110 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 110 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 110 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.63 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 SER A 214 ? A -11.32 2 1 SER A 214 ? B -12.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A GLY -9 ? A GLY 13 14 1 Y 1 A LEU -8 ? A LEU 14 15 1 Y 1 A VAL -7 ? A VAL 15 16 1 Y 1 A PRO -6 ? A PRO 16 17 1 Y 1 A ARG -5 ? A ARG 17 18 1 Y 1 A GLY -4 ? A GLY 18 19 1 Y 1 A SER -3 ? A SER 19 20 1 Y 1 A HIS -2 ? A HIS 20 21 1 Y 1 A MET -1 ? A MET 21 22 1 Y 1 A LEU 0 ? A LEU 22 23 1 Y 1 A GLU 1 ? A GLU 23 24 1 Y 1 A LYS 280 ? A LYS 302 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'PALMITIC ACID' PLM 4 GLYCEROL GOL 5 'N-TRIDECANOIC ACID' TDA 6 'OCTANOIC ACID (CAPRYLIC ACID)' OCA 7 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 301 280 MG MG A . C 3 PLM 1 302 1 PLM PLM A . D 4 GOL 1 303 1 GOL GOL A . E 5 TDA 1 304 1 TDA TDA A . F 6 OCA 1 305 1 OCA OCA A . G 7 HOH 1 401 1 HOH HOH A . G 7 HOH 2 402 2 HOH HOH A . G 7 HOH 3 403 3 HOH HOH A . G 7 HOH 4 404 4 HOH HOH A . G 7 HOH 5 405 5 HOH HOH A . G 7 HOH 6 406 6 HOH HOH A . G 7 HOH 7 407 7 HOH HOH A . G 7 HOH 8 408 8 HOH HOH A . G 7 HOH 9 409 9 HOH HOH A . G 7 HOH 10 410 10 HOH HOH A . G 7 HOH 11 411 11 HOH HOH A . G 7 HOH 12 412 12 HOH HOH A . G 7 HOH 13 413 13 HOH HOH A . G 7 HOH 14 414 14 HOH HOH A . G 7 HOH 15 415 15 HOH HOH A . G 7 HOH 16 416 16 HOH HOH A . G 7 HOH 17 417 17 HOH HOH A . G 7 HOH 18 418 18 HOH HOH A . G 7 HOH 19 419 19 HOH HOH A . G 7 HOH 20 420 20 HOH HOH A . G 7 HOH 21 421 21 HOH HOH A . G 7 HOH 22 422 22 HOH HOH A . G 7 HOH 23 423 23 HOH HOH A . G 7 HOH 24 424 24 HOH HOH A . G 7 HOH 25 425 25 HOH HOH A . G 7 HOH 26 426 26 HOH HOH A . G 7 HOH 27 427 27 HOH HOH A . G 7 HOH 28 428 28 HOH HOH A . G 7 HOH 29 429 29 HOH HOH A . G 7 HOH 30 430 30 HOH HOH A . G 7 HOH 31 431 31 HOH HOH A . G 7 HOH 32 432 32 HOH HOH A . G 7 HOH 33 433 33 HOH HOH A . G 7 HOH 34 434 34 HOH HOH A . G 7 HOH 35 435 35 HOH HOH A . G 7 HOH 36 436 36 HOH HOH A . G 7 HOH 37 437 37 HOH HOH A . G 7 HOH 38 438 38 HOH HOH A . G 7 HOH 39 439 40 HOH HOH A . G 7 HOH 40 440 41 HOH HOH A . G 7 HOH 41 441 42 HOH HOH A . G 7 HOH 42 442 43 HOH HOH A . G 7 HOH 43 443 44 HOH HOH A . G 7 HOH 44 444 45 HOH HOH A . G 7 HOH 45 445 46 HOH HOH A . G 7 HOH 46 446 47 HOH HOH A . G 7 HOH 47 447 48 HOH HOH A . G 7 HOH 48 448 49 HOH HOH A . G 7 HOH 49 449 50 HOH HOH A . G 7 HOH 50 450 51 HOH HOH A . G 7 HOH 51 451 52 HOH HOH A . G 7 HOH 52 452 53 HOH HOH A . G 7 HOH 53 453 55 HOH HOH A . G 7 HOH 54 454 56 HOH HOH A . G 7 HOH 55 455 57 HOH HOH A . G 7 HOH 56 456 58 HOH HOH A . G 7 HOH 57 457 59 HOH HOH A . G 7 HOH 58 458 60 HOH HOH A . G 7 HOH 59 459 61 HOH HOH A . G 7 HOH 60 460 62 HOH HOH A . G 7 HOH 61 461 63 HOH HOH A . G 7 HOH 62 462 64 HOH HOH A . G 7 HOH 63 463 65 HOH HOH A . G 7 HOH 64 464 66 HOH HOH A . G 7 HOH 65 465 67 HOH HOH A . G 7 HOH 66 466 68 HOH HOH A . G 7 HOH 67 467 69 HOH HOH A . G 7 HOH 68 468 70 HOH HOH A . G 7 HOH 69 469 71 HOH HOH A . G 7 HOH 70 470 72 HOH HOH A . G 7 HOH 71 471 73 HOH HOH A . G 7 HOH 72 472 74 HOH HOH A . G 7 HOH 73 473 76 HOH HOH A . G 7 HOH 74 474 77 HOH HOH A . G 7 HOH 75 475 78 HOH HOH A . G 7 HOH 76 476 79 HOH HOH A . G 7 HOH 77 477 80 HOH HOH A . G 7 HOH 78 478 81 HOH HOH A . G 7 HOH 79 479 82 HOH HOH A . G 7 HOH 80 480 83 HOH HOH A . G 7 HOH 81 481 84 HOH HOH A . G 7 HOH 82 482 85 HOH HOH A . G 7 HOH 83 483 86 HOH HOH A . G 7 HOH 84 484 87 HOH HOH A . #