HEADER SIGNALING PROTEIN, HYDROLASE 05-DEC-14 4RWS
TITLE CRYSTAL STRUCTURE OF CXCR4 AND VIRAL CHEMOKINE ANTAGONIST VMIP-II
TITLE 2 COMPLEX (PSI COMMUNITY TARGET)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: C-X-C CHEMOKINE RECEPTOR TYPE 4/ENDOLYSIN CHIMERIC PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CXCR4 RESIDUES 2-228, LYSOZYME RESIDUES 1002-1161, CXCR4
COMPND 5 RESIDUES 231-319;
COMPND 6 SYNONYM: CXC-R4, CXCR-4, STROMAL CELL-DERIVED FACTOR 1 RECEPTOR, SDF-
COMPND 7 1 RECEPTOR, FUSIN, LEUKOCYTE-DERIVED SEVEN TRANSMEMBRANE DOMAIN
COMPND 8 RECEPTOR, LESTR, LCR1, FB22, NPYRL, HM89, LYSIS PROTEIN, MURAMIDASE,
COMPND 9 ENDOLYSIN;
COMPND 10 EC: 3.2.1.17;
COMPND 11 ENGINEERED: YES;
COMPND 12 MUTATION: YES;
COMPND 13 MOL_ID: 2;
COMPND 14 MOLECULE: VIRAL MACROPHAGE INFLAMMATORY PROTEIN 2;
COMPND 15 CHAIN: C;
COMPND 16 SYNONYM: VIRAL MACROPHAGE INFLAMMATORY PROTEIN II, VMIP-II, VMIP-1B;
COMPND 17 ENGINEERED: YES;
COMPND 18 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_TAXID: 9606, 10665;
SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PFASTBAC;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 STRAIN GK18;
SOURCE 10 ORGANISM_COMMON: HHV-8;
SOURCE 11 ORGANISM_TAXID: 868565;
SOURCE 12 GENE: ORF K4;
SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 15 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFASTBAC
KEYWDS HUMAN CHEMOKINE-CHEMOKINE RECEPTOR COMPLEX, GPCR SIGNALING, PSI-
KEYWDS 2 BIOLOGY, GPCR NETWORK, MEMBRANE PROTEIN, GPCR, CXCR4, VIRAL
KEYWDS 3 ANTAGONIST CHEMOKINE VMIP-II, MEMBRANE, LIPIDIC CUBIC PHASE, T4L,
KEYWDS 4 STRUCTURAL GENOMICS, SIGNALING PROTEIN, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.QIN,I.KUFAREVA,L.HOLDEN,C.WANG,Y.ZHENG,H.WU,G.FENALTI,G.W.HAN,
AUTHOR 2 V.CHEREZOV,R.ABAGYAN,R.C.STEVENS,T.M.HANDEL,GPCR NETWORK (GPCR)
REVDAT 7 20-NOV-24 4RWS 1 REMARK
REVDAT 6 20-SEP-23 4RWS 1 SEQADV
REVDAT 5 22-NOV-17 4RWS 1 REMARK
REVDAT 4 02-AUG-17 4RWS 1 SOURCE REMARK
REVDAT 3 15-APR-15 4RWS 1 JRNL
REVDAT 2 25-FEB-15 4RWS 1 JRNL
REVDAT 1 11-FEB-15 4RWS 0
JRNL AUTH L.QIN,I.KUFAREVA,L.G.HOLDEN,C.WANG,Y.ZHENG,C.ZHAO,G.FENALTI,
JRNL AUTH 2 H.WU,G.W.HAN,V.CHEREZOV,R.ABAGYAN,R.C.STEVENS,T.M.HANDEL
JRNL TITL STRUCTURAL BIOLOGY. CRYSTAL STRUCTURE OF THE CHEMOKINE
JRNL TITL 2 RECEPTOR CXCR4 IN COMPLEX WITH A VIRAL CHEMOKINE.
JRNL REF SCIENCE V. 347 1117 2015
JRNL REFN ISSN 0036-8075
JRNL PMID 25612609
JRNL DOI 10.1126/SCIENCE.1261064
REMARK 2
REMARK 2 RESOLUTION. 3.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6
REMARK 3 NUMBER OF REFLECTIONS : 15153
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.251
REMARK 3 R VALUE (WORKING SET) : 0.249
REMARK 3 FREE R VALUE : 0.274
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 767
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 3.3100 - 3.1000 0.86 1520 79 0.2504 0.2421
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : NULL
REMARK 3 SHRINKAGE RADIUS : NULL
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 82.26
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.16
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 12.82150
REMARK 3 B22 (A**2) : -1.47950
REMARK 3 B33 (A**2) : -11.34200
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 4057
REMARK 3 ANGLE : 0.940 5535
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL 594
REMARK 3 DIHEDRAL : NULL 1806
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|23 - A|303 }
REMARK 3 ORIGIN FOR THE GROUP (A): 99.7894 2.4949 47.9252
REMARK 3 T TENSOR
REMARK 3 T11: 0.2549 T22: -0.2657
REMARK 3 T33: -0.4269 T12: -0.0538
REMARK 3 T13: -0.0028 T23: -0.0361
REMARK 3 L TENSOR
REMARK 3 L11: 1.3098 L22: 2.8554
REMARK 3 L33: 6.9762 L12: -0.0287
REMARK 3 L13: -1.5603 L23: 1.3744
REMARK 3 S TENSOR
REMARK 3 S11: 0.0272 S12: -0.1203 S13: -0.0917
REMARK 3 S21: -0.0130 S22: 0.0710 S23: -0.3034
REMARK 3 S31: 0.0235 S32: 0.5794 S33: -0.0981
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|1002 - A|1164 }
REMARK 3 ORIGIN FOR THE GROUP (A): 86.7705 25.2500 82.4686
REMARK 3 T TENSOR
REMARK 3 T11: 0.6079 T22: -0.3399
REMARK 3 T33: -0.6079 T12: -0.0860
REMARK 3 T13: 0.1059 T23: -0.0550
REMARK 3 L TENSOR
REMARK 3 L11: 5.9286 L22: 5.4991
REMARK 3 L33: 3.5594 L12: -1.3641
REMARK 3 L13: 0.9960 L23: 0.5408
REMARK 3 S TENSOR
REMARK 3 S11: 0.1015 S12: 0.2827 S13: -0.0150
REMARK 3 S21: -0.7653 S22: 0.0573 S23: -0.2909
REMARK 3 S31: -0.8946 S32: 0.4631 S33: -0.1587
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|1 - C|70 }
REMARK 3 ORIGIN FOR THE GROUP (A): 100.4600 8.0975 10.0361
REMARK 3 T TENSOR
REMARK 3 T11: 0.5890 T22: -0.2539
REMARK 3 T33: -0.4969 T12: -0.1526
REMARK 3 T13: 0.1134 T23: 0.0386
REMARK 3 L TENSOR
REMARK 3 L11: 0.9662 L22: 9.1126
REMARK 3 L33: 8.8686 L12: 0.1236
REMARK 3 L13: -0.3782 L23: 5.1155
REMARK 3 S TENSOR
REMARK 3 S11: 0.0263 S12: 0.0019 S13: -0.0116
REMARK 3 S21: 0.1181 S22: -0.0586 S23: 0.2515
REMARK 3 S31: -0.0536 S32: -0.2730 S33: 0.0323
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4RWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-15.
REMARK 100 THE DEPOSITION ID IS D_1000087892.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14; 21-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100; 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 10
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y; Y
REMARK 200 RADIATION SOURCE : APS; APS
REMARK 200 BEAMLINE : 23-ID-B; 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332; 1.0332
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; ACCEL FIXED EXIT
REMARK 200 DOUBLE CRYSTAL
REMARK 200 OPTICS : MIRRORS; NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD; PIXEL
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; PSI
REMARK 200 PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16747
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8
REMARK 200 DATA REDUNDANCY : 8.800
REMARK 200 R MERGE (I) : 0.13000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21
REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7
REMARK 200 DATA REDUNDANCY IN SHELL : 7.50
REMARK 200 R MERGE FOR SHELL (I) : 0.69000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3OE0, PDB ENTRY 2FHT
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 66.01
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.5, 28% PEG
REMARK 280 400, 120 MM AMMONIUM PHOSPHATE DIBASIC, 2-6% POLYPROPYLENE P400,
REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.16000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.91350
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.88300
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.16000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.91350
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.88300
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.16000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.91350
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.88300
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.16000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.91350
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.88300
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 25900 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A -8
REMARK 465 TYR A -7
REMARK 465 LYS A -6
REMARK 465 ASP A -5
REMARK 465 ASP A -4
REMARK 465 ASP A -3
REMARK 465 ASP A -2
REMARK 465 GLY A -1
REMARK 465 ALA A 0
REMARK 465 PRO A 1
REMARK 465 GLU A 2
REMARK 465 GLY A 3
REMARK 465 ILE A 4
REMARK 465 SER A 5
REMARK 465 ILE A 6
REMARK 465 TYR A 7
REMARK 465 THR A 8
REMARK 465 SER A 9
REMARK 465 ASP A 10
REMARK 465 ASN A 11
REMARK 465 TYR A 12
REMARK 465 THR A 13
REMARK 465 GLU A 14
REMARK 465 GLU A 15
REMARK 465 MET A 16
REMARK 465 GLY A 17
REMARK 465 SER A 18
REMARK 465 GLY A 19
REMARK 465 ASP A 20
REMARK 465 TYR A 21
REMARK 465 ASP A 22
REMARK 465 LYS A 67
REMARK 465 LYS A 68
REMARK 465 LEU A 69
REMARK 465 ARG A 70
REMARK 465 PHE A 304
REMARK 465 LEU A 305
REMARK 465 GLY A 306
REMARK 465 ALA A 307
REMARK 465 LYS A 308
REMARK 465 PHE A 309
REMARK 465 LYS A 310
REMARK 465 THR A 311
REMARK 465 SER A 312
REMARK 465 ALA A 313
REMARK 465 GLN A 314
REMARK 465 HIS A 315
REMARK 465 ALA A 316
REMARK 465 LEU A 317
REMARK 465 THR A 318
REMARK 465 SER A 319
REMARK 465 GLY A 320
REMARK 465 ARG A 321
REMARK 465 PRO A 322
REMARK 465 LEU A 323
REMARK 465 GLU A 324
REMARK 465 VAL A 325
REMARK 465 LEU A 326
REMARK 465 PHE A 327
REMARK 465 GLN A 328
REMARK 465 ARG C 71
REMARK 465 TYR C 72
REMARK 465 PRO C 73
REMARK 465 TYR C 74
REMARK 465 ASP C 75
REMARK 465 VAL C 76
REMARK 465 PRO C 77
REMARK 465 ASP C 78
REMARK 465 TYR C 79
REMARK 465 ALA C 80
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 38 CG CD CE NZ
REMARK 470 LYS A 75 CG CD CE NZ
REMARK 470 ASN A 143 CG OD1 ND2
REMARK 470 LYS A 149 CG CD CE NZ
REMARK 470 LYS A1019 CD CE NZ
REMARK 470 ARG A1076 CG CD NE CZ NH1 NH2
REMARK 470 ILE A1078 CG1 CG2 CD1
REMARK 470 ARG A1080 CG CD NE CZ NH1 NH2
REMARK 470 LYS A1083 CG CD CE NZ
REMARK 470 LEU A1084 CG CD1 CD2
REMARK 470 LYS A1085 CG CD CE NZ
REMARK 470 THR A1115 OG1 CG2
REMARK 470 ARG A1119 CG CD NE CZ NH1 NH2
REMARK 470 GLN A1122 CD OE1 NE2
REMARK 470 GLN A1123 CG CD OE1 NE2
REMARK 470 LYS A1124 CG CD CE NZ
REMARK 470 GLU A1128 CG CD OE1 OE2
REMARK 470 ASN A1132 CG OD1 ND2
REMARK 470 LYS A1135 CG CD CE NZ
REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2
REMARK 470 LYS A1147 CD CE NZ
REMARK 470 SER A1164 OG
REMARK 470 GLN A 233 CG CD OE1 NE2
REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 236 CE NZ
REMARK 470 LYS A 239 CG CD CE NZ
REMARK 470 LYS C 17 CG CD CE NZ
REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2
REMARK 470 LEU C 24 CG CD1 CD2
REMARK 470 LYS C 56 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 100 -114.40 -102.62
REMARK 500 ASN A 143 80.00 -156.02
REMARK 500 LYS A 154 -53.55 -126.42
REMARK 500 VAL A 160 -58.51 -123.97
REMARK 500 ASP A 181 -98.60 59.04
REMARK 500 MET A 205 -71.24 -73.70
REMARK 500 LEU A 208 -52.39 -147.35
REMARK 500 ASP A1010 -70.56 -76.41
REMARK 500 ASN A1055 36.13 -98.78
REMARK 500 ASP A1092 -151.33 -79.11
REMARK 500 PHE A1114 34.84 -97.42
REMARK 500 SER A1164 -127.83 -137.79
REMARK 500 HIS C 6 -71.02 -62.53
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3ODU RELATED DB: PDB
REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN P21 SPACEGROUP
REMARK 900 RELATED ID: 3OE6 RELATED DB: PDB
REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN I222 SPACEGROUP
REMARK 900 RELATED ID: 3OE8 RELATED DB: PDB
REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN P1 SPACEGROUP
REMARK 900 RELATED ID: 3OE9 RELATED DB: PDB
REMARK 900 CXCR4 WITH SMALL-MOLECULE IN P1 SPACEGROUP
REMARK 900 RELATED ID: 3OE0 RELATED DB: PDB
REMARK 900 CXCR4 WITH CYCLIC PEPTIDE ANTAGONISTS.
REMARK 900 RELATED ID: GPCR-34 RELATED DB: TARGETTRACK
DBREF 4RWS A 2 228 UNP P61073 CXCR4_HUMAN 2 228
DBREF 4RWS A 1002 1161 UNP P00720 LYS_BPT4 1002 1161
DBREF 4RWS A 231 319 UNP P61073 CXCR4_HUMAN 231 319
DBREF 4RWS C 1 71 UNP Q98157 VMI2_HHV8P 24 94
SEQADV 4RWS ASP A -8 UNP P61073 EXPRESSION TAG
SEQADV 4RWS TYR A -7 UNP P61073 EXPRESSION TAG
SEQADV 4RWS LYS A -6 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ASP A -5 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ASP A -4 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ASP A -3 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ASP A -2 UNP P61073 EXPRESSION TAG
SEQADV 4RWS GLY A -1 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ALA A 0 UNP P61073 EXPRESSION TAG
SEQADV 4RWS PRO A 1 UNP P61073 EXPRESSION TAG
SEQADV 4RWS TRP A 125 UNP P61073 LEU 125 ENGINEERED MUTATION
SEQADV 4RWS CYS A 187 UNP P61073 ASP 187 ENGINEERED MUTATION
SEQADV 4RWS THR A 1054 UNP P00720 CYS 1054 ENGINEERED MUTATION
SEQADV 4RWS ALA A 1097 UNP P00720 CYS 1097 ENGINEERED MUTATION
SEQADV 4RWS SER A 1162 UNP P00720 LINKER
SEQADV 4RWS GLY A 1163 UNP P00720 LINKER
SEQADV 4RWS SER A 1164 UNP P00720 LINKER
SEQADV 4RWS PRO A 240 UNP P61073 THR 240 ENGINEERED MUTATION
SEQADV 4RWS GLY A 320 UNP P61073 EXPRESSION TAG
SEQADV 4RWS ARG A 321 UNP P61073 EXPRESSION TAG
SEQADV 4RWS PRO A 322 UNP P61073 EXPRESSION TAG
SEQADV 4RWS LEU A 323 UNP P61073 EXPRESSION TAG
SEQADV 4RWS GLU A 324 UNP P61073 EXPRESSION TAG
SEQADV 4RWS VAL A 325 UNP P61073 EXPRESSION TAG
SEQADV 4RWS LEU A 326 UNP P61073 EXPRESSION TAG
SEQADV 4RWS PHE A 327 UNP P61073 EXPRESSION TAG
SEQADV 4RWS GLN A 328 UNP P61073 EXPRESSION TAG
SEQADV 4RWS CYS C 5 UNP Q98157 TRP 28 ENGINEERED MUTATION
SEQADV 4RWS TYR C 72 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS PRO C 73 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS TYR C 74 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS ASP C 75 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS VAL C 76 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS PRO C 77 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS ASP C 78 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS TYR C 79 UNP Q98157 EXPRESSION TAG
SEQADV 4RWS ALA C 80 UNP Q98157 EXPRESSION TAG
SEQRES 1 A 498 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO GLU GLY ILE
SEQRES 2 A 498 SER ILE TYR THR SER ASP ASN TYR THR GLU GLU MET GLY
SEQRES 3 A 498 SER GLY ASP TYR ASP SER MET LYS GLU PRO CYS PHE ARG
SEQRES 4 A 498 GLU GLU ASN ALA ASN PHE ASN LYS ILE PHE LEU PRO THR
SEQRES 5 A 498 ILE TYR SER ILE ILE PHE LEU THR GLY ILE VAL GLY ASN
SEQRES 6 A 498 GLY LEU VAL ILE LEU VAL MET GLY TYR GLN LYS LYS LEU
SEQRES 7 A 498 ARG SER MET THR ASP LYS TYR ARG LEU HIS LEU SER VAL
SEQRES 8 A 498 ALA ASP LEU LEU PHE VAL ILE THR LEU PRO PHE TRP ALA
SEQRES 9 A 498 VAL ASP ALA VAL ALA ASN TRP TYR PHE GLY ASN PHE LEU
SEQRES 10 A 498 CYS LYS ALA VAL HIS VAL ILE TYR THR VAL ASN LEU TYR
SEQRES 11 A 498 SER SER VAL TRP ILE LEU ALA PHE ILE SER LEU ASP ARG
SEQRES 12 A 498 TYR LEU ALA ILE VAL HIS ALA THR ASN SER GLN ARG PRO
SEQRES 13 A 498 ARG LYS LEU LEU ALA GLU LYS VAL VAL TYR VAL GLY VAL
SEQRES 14 A 498 TRP ILE PRO ALA LEU LEU LEU THR ILE PRO ASP PHE ILE
SEQRES 15 A 498 PHE ALA ASN VAL SER GLU ALA ASP ASP ARG TYR ILE CYS
SEQRES 16 A 498 CYS ARG PHE TYR PRO ASN ASP LEU TRP VAL VAL VAL PHE
SEQRES 17 A 498 GLN PHE GLN HIS ILE MET VAL GLY LEU ILE LEU PRO GLY
SEQRES 18 A 498 ILE VAL ILE LEU SER CYS TYR CYS ILE ILE ILE SER LYS
SEQRES 19 A 498 LEU SER HIS ASN ILE PHE GLU MET LEU ARG ILE ASP GLU
SEQRES 20 A 498 GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR
SEQRES 21 A 498 TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO
SEQRES 22 A 498 SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE
SEQRES 23 A 498 GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA
SEQRES 24 A 498 GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG
SEQRES 25 A 498 GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP
SEQRES 26 A 498 SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET
SEQRES 27 A 498 VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR
SEQRES 28 A 498 ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU
SEQRES 29 A 498 ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN
SEQRES 30 A 498 THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG
SEQRES 31 A 498 THR GLY THR TRP ASP ALA TYR SER GLY SER GLY HIS GLN
SEQRES 32 A 498 LYS ARG LYS ALA LEU LYS PRO THR VAL ILE LEU ILE LEU
SEQRES 33 A 498 ALA PHE PHE ALA CYS TRP LEU PRO TYR TYR ILE GLY ILE
SEQRES 34 A 498 SER ILE ASP SER PHE ILE LEU LEU GLU ILE ILE LYS GLN
SEQRES 35 A 498 GLY CYS GLU PHE GLU ASN THR VAL HIS LYS TRP ILE SER
SEQRES 36 A 498 ILE THR GLU ALA LEU ALA PHE PHE HIS CYS CYS LEU ASN
SEQRES 37 A 498 PRO ILE LEU TYR ALA PHE LEU GLY ALA LYS PHE LYS THR
SEQRES 38 A 498 SER ALA GLN HIS ALA LEU THR SER GLY ARG PRO LEU GLU
SEQRES 39 A 498 VAL LEU PHE GLN
SEQRES 1 C 80 LEU GLY ALA SER CYS HIS ARG PRO ASP LYS CYS CYS LEU
SEQRES 2 C 80 GLY TYR GLN LYS ARG PRO LEU PRO GLN VAL LEU LEU SER
SEQRES 3 C 80 SER TRP TYR PRO THR SER GLN LEU CYS SER LYS PRO GLY
SEQRES 4 C 80 VAL ILE PHE LEU THR LYS ARG GLY ARG GLN VAL CYS ALA
SEQRES 5 C 80 ASP LYS SER LYS ASP TRP VAL LYS LYS LEU MET GLN GLN
SEQRES 6 C 80 LEU PRO VAL THR ALA ARG TYR PRO TYR ASP VAL PRO ASP
SEQRES 7 C 80 TYR ALA
HELIX 1 1 ARG A 30 GLY A 64 1 35
HELIX 2 2 MET A 72 ASP A 84 1 13
HELIX 3 3 ASP A 84 ILE A 89 1 6
HELIX 4 4 THR A 90 ALA A 100 1 11
HELIX 5 5 GLY A 105 VAL A 139 1 35
HELIX 6 6 HIS A 140 ASN A 143 5 4
HELIX 7 7 SER A 144 LYS A 154 1 11
HELIX 8 8 LYS A 154 VAL A 160 1 7
HELIX 9 9 VAL A 160 LEU A 167 1 8
HELIX 10 10 ILE A 169 PHE A 174 1 6
HELIX 11 11 ASN A 192 LEU A 208 1 17
HELIX 12 12 LEU A 208 GLU A 1011 1 31
HELIX 13 13 SER A 1038 GLY A 1051 1 14
HELIX 14 14 THR A 1059 LEU A 1079 1 21
HELIX 15 15 LEU A 1084 ASP A 1089 1 6
HELIX 16 16 ALA A 1093 MET A 1106 1 14
HELIX 17 17 GLY A 1107 ALA A 1112 1 6
HELIX 18 18 PHE A 1114 GLN A 1123 1 10
HELIX 19 19 ARG A 1125 ALA A 1134 1 10
HELIX 20 20 THR A 1142 GLY A 1156 1 15
HELIX 21 21 THR A 1157 TYR A 1161 5 5
HELIX 22 22 LEU A 238 LEU A 267 1 30
HELIX 23 23 GLY A 273 PHE A 292 1 20
HELIX 24 24 PHE A 293 CYS A 295 5 3
HELIX 25 25 CYS A 296 LEU A 301 1 6
HELIX 26 26 LYS C 56 LEU C 66 1 11
SHEET 1 A 2 ALA A 175 ALA A 180 0
SHEET 2 A 2 ARG A 183 ARG A 188 -1 O ILE A 185 N SER A 178
SHEET 1 B 3 TYR A1018 LYS A1019 0
SHEET 2 B 3 TYR A1025 ILE A1027 -1 O THR A1026 N TYR A1018
SHEET 3 B 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025
SHEET 1 C 3 LEU C 25 PRO C 30 0
SHEET 2 C 3 VAL C 40 THR C 44 -1 O ILE C 41 N TYR C 29
SHEET 3 C 3 GLN C 49 ALA C 52 -1 O VAL C 50 N PHE C 42
SSBOND 1 CYS A 28 CYS A 274 1555 1555 2.04
SSBOND 2 CYS A 109 CYS A 186 1555 1555 2.04
SSBOND 3 CYS A 187 CYS C 5 1555 1555 2.03
SSBOND 4 CYS C 11 CYS C 35 1555 1555 2.04
SSBOND 5 CYS C 12 CYS C 51 1555 1555 2.04
CRYST1 82.320 121.827 189.766 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012148 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008208 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005270 0.00000