HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 08-DEC-14 4RX0 TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE TITLE 2 DEHYDROGENASE BOUND WITH INHIBITOR DSM265 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-569; COMPND 5 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: DIHYDROOROTATE DEHYDROGENASE, PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ALPHA/BETA BARREL, OXIDOREDUCTASE, FM, MITOCHONDRIAL MEMBRANE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.PHILLIPS,D.TOMCHICK REVDAT 3 20-SEP-23 4RX0 1 REMARK SEQADV REVDAT 2 17-JUL-19 4RX0 1 REMARK REVDAT 1 29-JUL-15 4RX0 0 JRNL AUTH M.A.PHILLIPS,J.LOTHARIUS,K.MARSH,J.WHITE,A.DAYAN,K.L.WHITE, JRNL AUTH 2 J.W.NJOROGE,F.EL MAZOUNI,Y.LAO,S.KOKKONDA,D.R.TOMCHICK, JRNL AUTH 3 X.DENG,T.LAIRD,S.N.BHATIA,S.MARCH,C.L.NG,D.A.FIDOCK, JRNL AUTH 4 S.WITTLIN,M.LAFUENTE-MONASTERIO,F.J.BENITO,L.M.ALONSO, JRNL AUTH 5 M.S.MARTINEZ,M.B.JIMENEZ-DIAZ,S.F.BAZAGA,I.ANGULO-BARTUREN, JRNL AUTH 6 J.N.HASELDEN,J.LOUTTIT,Y.CUI,A.SRIDHAR,A.M.ZEEMAN,C.KOCKEN, JRNL AUTH 7 R.SAUERWEIN,K.DECHERING,V.M.AVERY,S.DUFFY,M.DELVES,R.SINDEN, JRNL AUTH 8 A.RUECKER,K.S.WICKHAM,R.ROCHFORD,J.GAHAGEN,L.IYER,E.RICCIO, JRNL AUTH 9 J.MIRSALIS,I.BATHHURST,T.RUECKLE,X.DING,B.CAMPO,D.LEROY, JRNL AUTH10 M.J.ROGERS,P.K.RATHOD,J.N.BURROWS,S.A.CHARMAN JRNL TITL A LONG-DURATION DIHYDROOROTATE DEHYDROGENASE INHIBITOR JRNL TITL 2 (DSM265) FOR PREVENTION AND TREATMENT OF MALARIA. JRNL REF SCI TRANSL MED V. 7 RA111 2015 JRNL REFN ISSN 1946-6234 JRNL PMID 26180101 JRNL DOI 10.1126/SCITRANSLMED.AAA6645 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 21810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.1776 - 4.4782 0.88 3058 167 0.1551 0.1659 REMARK 3 2 4.4782 - 3.5670 0.91 3109 179 0.1604 0.1710 REMARK 3 3 3.5670 - 3.1198 0.92 3160 171 0.1841 0.2035 REMARK 3 4 3.1198 - 2.8362 0.93 3183 168 0.1949 0.2248 REMARK 3 5 2.8362 - 2.6338 0.89 3028 167 0.1952 0.2038 REMARK 3 6 2.6338 - 2.4791 0.74 2493 136 0.2109 0.2865 REMARK 3 7 2.4791 - 2.3554 0.48 1638 79 0.2268 0.2269 REMARK 3 8 2.3554 - 2.2500 0.28 948 51 0.2358 0.3013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -2.05000 REMARK 3 B12 (A**2) : 0.68000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.6700 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3072 REMARK 3 ANGLE : 0.875 4147 REMARK 3 CHIRALITY : 0.029 453 REMARK 3 PLANARITY : 0.003 516 REMARK 3 DIHEDRAL : 15.266 1133 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 161:205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6632 -8.1173 -16.8517 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.2597 REMARK 3 T33: 0.3019 T12: -0.1004 REMARK 3 T13: -0.0094 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 1.0578 L22: 0.4062 REMARK 3 L33: 1.7112 L12: -0.5850 REMARK 3 L13: -0.9306 L23: 0.3933 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.3226 S13: -0.1734 REMARK 3 S21: -0.2491 S22: -0.0117 S23: 0.1735 REMARK 3 S31: 0.0862 S32: -0.2526 S33: -0.0756 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 206:282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9891 -9.9291 -5.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.1743 REMARK 3 T33: 0.2827 T12: -0.0482 REMARK 3 T13: 0.0405 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.5370 L22: 0.5062 REMARK 3 L33: 1.0075 L12: 0.0087 REMARK 3 L13: -0.4064 L23: 0.1433 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.1258 S13: -0.1135 REMARK 3 S21: -0.0139 S22: 0.0987 S23: -0.0877 REMARK 3 S31: 0.1393 S32: 0.2183 S33: 0.0389 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 283:356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8016 -0.9326 0.9010 REMARK 3 T TENSOR REMARK 3 T11: -0.0071 T22: 0.3408 REMARK 3 T33: 0.3551 T12: -0.0381 REMARK 3 T13: -0.0539 T23: -0.1654 REMARK 3 L TENSOR REMARK 3 L11: 2.0273 L22: 0.8540 REMARK 3 L33: 0.6666 L12: -0.0828 REMARK 3 L13: 0.0449 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.1094 S13: 0.0674 REMARK 3 S21: 0.0438 S22: 0.0545 S23: -0.2933 REMARK 3 S31: -0.0182 S32: 0.3475 S33: 0.0376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 357:566 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2945 -17.6029 3.6867 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.2690 REMARK 3 T33: 0.3465 T12: 0.0783 REMARK 3 T13: 0.0013 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.0651 L22: 1.2491 REMARK 3 L33: 1.0583 L12: -0.0239 REMARK 3 L13: 0.0600 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.2989 S13: -0.3818 REMARK 3 S21: 0.2152 S22: 0.1042 S23: -0.1310 REMARK 3 S31: 0.3517 S32: 0.2273 S33: -0.0220 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 39.216 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3I65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 6.5, 18% PEG500, 16% GLYCEROL, AND 10 MM DTT, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.14167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.28333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.14167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.28333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ASN A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 ARG A 352 REMARK 465 ASP A 353 REMARK 465 ASN A 354 REMARK 465 GLN A 355 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -132.95 55.10 REMARK 500 ASP A 228 75.69 -119.02 REMARK 500 ASP A 317 77.12 -104.86 REMARK 500 ASN A 418 -155.05 -127.89 REMARK 500 TYR A 528 -65.90 -141.64 REMARK 500 ARG A 564 49.64 -87.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D65 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 DBREF 4RX0 A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 4RX0 MET A 139 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 4RX0 A UNP Q08210 SER 384 DELETION SEQADV 4RX0 A UNP Q08210 THR 385 DELETION SEQADV 4RX0 A UNP Q08210 TYR 386 DELETION SEQADV 4RX0 A UNP Q08210 ASN 387 DELETION SEQADV 4RX0 A UNP Q08210 GLU 388 DELETION SEQADV 4RX0 A UNP Q08210 ASP 389 DELETION SEQADV 4RX0 A UNP Q08210 ASN 390 DELETION SEQADV 4RX0 A UNP Q08210 LYS 391 DELETION SEQADV 4RX0 A UNP Q08210 ILE 392 DELETION SEQADV 4RX0 A UNP Q08210 VAL 393 DELETION SEQADV 4RX0 A UNP Q08210 GLU 394 DELETION SEQADV 4RX0 A UNP Q08210 LYS 395 DELETION SEQADV 4RX0 A UNP Q08210 LYS 396 DELETION SEQADV 4RX0 A UNP Q08210 ASN 397 DELETION SEQADV 4RX0 A UNP Q08210 ASN 398 DELETION SEQADV 4RX0 A UNP Q08210 PHE 399 DELETION SEQADV 4RX0 A UNP Q08210 ASN 400 DELETION SEQADV 4RX0 A UNP Q08210 LYS 401 DELETION SEQADV 4RX0 A UNP Q08210 ASN 402 DELETION SEQADV 4RX0 A UNP Q08210 ASN 403 DELETION SEQADV 4RX0 A UNP Q08210 SER 404 DELETION SEQADV 4RX0 A UNP Q08210 HIS 405 DELETION SEQADV 4RX0 A UNP Q08210 MET 406 DELETION SEQADV 4RX0 A UNP Q08210 MET 407 DELETION SEQADV 4RX0 A UNP Q08210 LYS 408 DELETION SEQADV 4RX0 A UNP Q08210 ASP 409 DELETION SEQADV 4RX0 A UNP Q08210 ALA 410 DELETION SEQADV 4RX0 A UNP Q08210 LYS 411 DELETION SEQADV 4RX0 A UNP Q08210 ASP 412 DELETION SEQADV 4RX0 A UNP Q08210 ASN 413 DELETION SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET D65 A1001 70 HET FMN A1002 50 HET ORO A1003 14 HET GOL A1004 14 HETNAM D65 2-(1,1-DIFLUOROETHYL)-5-METHYL-N-[4-(PENTAFLUORO- HETNAM 2 D65 LAMBDA~6~-SULFANYL)PHENYL][1,2,4]TRIAZOLO[1,5- HETNAM 3 D65 A]PYRIMIDIN-7-AMINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM GOL GLYCEROL HETSYN D65 DSM265 HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 D65 C14 H12 F7 N5 S FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *71(H2 O) HELIX 1 1 ASN A 162 ILE A 179 1 18 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LYS A 239 1 7 HELIX 5 5 GLY A 282 GLU A 298 1 17 HELIX 6 6 GLU A 299 SER A 304 5 6 HELIX 7 7 ASN A 320 GLY A 333 1 14 HELIX 8 8 ARG A 334 ALA A 336 5 3 HELIX 9 9 ALA A 357 ASN A 377 1 21 HELIX 10 10 ASN A 381 TRP A 416 1 6 HELIX 11 11 ASN A 435 THR A 449 1 15 HELIX 12 12 ILE A 466 GLU A 470 5 5 HELIX 13 13 LEU A 481 THR A 496 1 16 HELIX 14 14 SER A 510 GLY A 521 1 12 HELIX 15 15 TYR A 528 GLY A 535 1 8 HELIX 16 16 LYS A 537 ARG A 553 1 17 HELIX 17 17 ASN A 557 ILE A 562 1 6 SHEET 1 A 2 THR A 210 ILE A 212 0 SHEET 2 A 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 B 9 PHE A 221 VAL A 223 0 SHEET 2 B 9 PHE A 244 ILE A 250 1 O PHE A 244 N VAL A 223 SHEET 3 B 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 B 9 TYR A 338 ASN A 342 1 O ALA A 340 N ILE A 312 SHEET 5 B 9 LEU A 425 LEU A 430 1 O LEU A 425 N ILE A 339 SHEET 6 B 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 B 9 ILE A 502 SER A 505 1 O ILE A 503 N MET A 454 SHEET 8 B 9 VAL A 524 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 B 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 C 3 ILE A 263 ASP A 266 0 SHEET 2 C 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 C 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 3.14 CISPEP 2 LYS A 260 PRO A 261 0 -3.70 CISPEP 3 ILE A 456 SER A 457 0 4.94 SITE 1 AC1 15 LEU A 172 LEU A 176 GLY A 181 GLU A 182 SITE 2 AC1 15 CYS A 184 HIS A 185 PHE A 188 LEU A 197 SITE 3 AC1 15 PHE A 227 LEU A 240 ILE A 263 ARG A 265 SITE 4 AC1 15 ILE A 272 LEU A 531 MET A 536 SITE 1 AC2 23 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 23 THR A 249 ASN A 274 ASN A 342 LYS A 429 SITE 3 AC2 23 SER A 457 ASN A 458 SER A 477 GLY A 478 SITE 4 AC2 23 SER A 505 GLY A 506 GLY A 507 TYR A 528 SITE 5 AC2 23 SER A 529 ORO A1003 HOH A1105 HOH A1106 SITE 6 AC2 23 HOH A1107 HOH A1118 HOH A1156 SITE 1 AC3 10 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 10 PHE A 278 ASN A 342 SER A 344 ASN A 458 SITE 3 AC3 10 THR A 459 FMN A1002 SITE 1 AC4 4 GLU A 164 ASN A 195 ILE A 196 LEU A 197 CRYST1 85.933 85.933 138.425 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011637 0.006719 0.000000 0.00000 SCALE2 0.000000 0.013437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007224 0.00000