HEADER TRANSFERASE 11-DEC-14 4RXK OBSLTE 03-JUN-15 4RXK 4ZWV TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE FROMACTINOMADURA TITLE 2 MELLIAURA IN THE COMPLEX WITH PYRIDOXAL 5'-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMADURA MELLIAURA; SOURCE 3 ORGANISM_TAXID: 360723; SOURCE 4 GENE: ATS13; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ENZYME DISCOVERY FOR NATURAL PRODUCT BIOSYNTHESIS, KEYWDS 3 NATPRO, ALPHA-BETA FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,L.BIGELOW,M.ENDRES,F.WANG,G.PHILLIPS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG),ENZYME DISCOVERY FOR NATURAL AUTHOR 3 PRODUCT BIOSYNTHESIS (NATPRO) REVDAT 2 03-JUN-15 4RXK 1 OBSLTE REVDAT 1 04-MAR-15 4RXK 0 JRNL AUTH Y.KIM,L.BIGELOW,M.ENDRES,F.WANG,G.PHILLIPS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE JRNL TITL 2 FROMACTINOMADURA MELLIAURA IN THE COMPLEX WITH PYRIDOXAL JRNL TITL 3 5'-PHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1839) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 131328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 6604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4241 - 4.6516 0.99 4363 215 0.1469 0.1583 REMARK 3 2 4.6516 - 3.6944 1.00 4292 244 0.1185 0.1350 REMARK 3 3 3.6944 - 3.2281 1.00 4256 256 0.1334 0.1421 REMARK 3 4 3.2281 - 2.9332 1.00 4250 216 0.1473 0.1685 REMARK 3 5 2.9332 - 2.7231 1.00 4285 231 0.1514 0.1778 REMARK 3 6 2.7231 - 2.5627 1.00 4274 220 0.1450 0.1596 REMARK 3 7 2.5627 - 2.4344 1.00 4248 217 0.1481 0.1528 REMARK 3 8 2.4344 - 2.3285 1.00 4292 207 0.1383 0.1577 REMARK 3 9 2.3285 - 2.2389 1.00 4253 207 0.1402 0.1602 REMARK 3 10 2.2389 - 2.1616 1.00 4262 218 0.1390 0.1602 REMARK 3 11 2.1616 - 2.0941 1.00 4224 224 0.1402 0.1597 REMARK 3 12 2.0941 - 2.0342 1.00 4240 226 0.1376 0.1419 REMARK 3 13 2.0342 - 1.9807 1.00 4285 205 0.1384 0.1754 REMARK 3 14 1.9807 - 1.9324 1.00 4255 249 0.1408 0.1417 REMARK 3 15 1.9324 - 1.8885 1.00 4204 220 0.1423 0.1730 REMARK 3 16 1.8885 - 1.8483 1.00 4232 222 0.1470 0.1686 REMARK 3 17 1.8483 - 1.8113 1.00 4257 226 0.1462 0.1831 REMARK 3 18 1.8113 - 1.7771 1.00 4215 209 0.1420 0.1511 REMARK 3 19 1.7771 - 1.7454 1.00 4248 207 0.1394 0.1737 REMARK 3 20 1.7454 - 1.7158 1.00 4272 223 0.1429 0.1736 REMARK 3 21 1.7158 - 1.6881 1.00 4206 257 0.1460 0.1575 REMARK 3 22 1.6881 - 1.6622 1.00 4217 211 0.1476 0.1720 REMARK 3 23 1.6622 - 1.6377 1.00 4227 233 0.1556 0.1802 REMARK 3 24 1.6377 - 1.6147 1.00 4209 236 0.1609 0.1993 REMARK 3 25 1.6147 - 1.5928 1.00 4211 232 0.1708 0.2193 REMARK 3 26 1.5928 - 1.5722 0.99 4183 236 0.1721 0.1796 REMARK 3 27 1.5722 - 1.5525 0.93 3945 193 0.1779 0.1970 REMARK 3 28 1.5525 - 1.5338 0.87 3678 216 0.1794 0.2095 REMARK 3 29 1.5338 - 1.5160 0.83 3488 178 0.1853 0.2202 REMARK 3 30 1.5160 - 1.4989 0.74 3153 170 0.1887 0.2024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6475 REMARK 3 ANGLE : 1.066 8868 REMARK 3 CHIRALITY : 0.045 952 REMARK 3 PLANARITY : 0.006 1181 REMARK 3 DIHEDRAL : 13.717 2412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain 'A' and resid 0 through 369) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4652 70.5364 12.7623 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.0852 REMARK 3 T33: 0.1058 T12: -0.0079 REMARK 3 T13: -0.0038 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5813 L22: 0.7695 REMARK 3 L33: 0.5644 L12: 0.0246 REMARK 3 L13: 0.0018 L23: 0.2194 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0584 S13: 0.1196 REMARK 3 S21: 0.0484 S22: -0.0426 S23: 0.0828 REMARK 3 S31: -0.0385 S32: -0.0572 S33: 0.0221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain 'B' and resid 0 through 369) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2095 38.6325 3.3129 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.0800 REMARK 3 T33: 0.0807 T12: -0.0074 REMARK 3 T13: -0.0052 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.7173 L22: 0.8087 REMARK 3 L33: 0.5695 L12: -0.0439 REMARK 3 L13: -0.2653 L23: 0.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0617 S13: -0.0742 REMARK 3 S21: 0.0111 S22: -0.0167 S23: 0.0072 REMARK 3 S31: 0.0777 S32: -0.0434 S33: 0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE RCSB ID CODE IS RCSB087920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131342 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, SHELXC/D/E, MLPHARE,DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 20 % (W/V) REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.14350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.14350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 354 O HOH A 998 1.90 REMARK 500 OG1 THR B 84 O HOH B 1005 2.01 REMARK 500 O LEU B 26 O HOH B 1007 2.02 REMARK 500 O HOH A 567 O HOH A 969 2.04 REMARK 500 NH1 ARG A 211 O HOH A 1031 2.04 REMARK 500 O HOH B 559 O HOH B 971 2.05 REMARK 500 O3 PLP A 403 O HOH A 1071 2.07 REMARK 500 O HOH B 643 O HOH B 1059 2.09 REMARK 500 O HOH A 528 O HOH A 985 2.09 REMARK 500 O HOH B 965 O HOH B 1013 2.09 REMARK 500 NH2 ARG A 207 O HOH A 1031 2.09 REMARK 500 O HOH A 645 O HOH A 942 2.10 REMARK 500 O HOH A 645 O HOH A 974 2.11 REMARK 500 O HOH A 624 O HOH A 984 2.11 REMARK 500 O HOH B 825 O HOH B 991 2.11 REMARK 500 O LEU A 26 O HOH A 889 2.11 REMARK 500 O HOH A 878 O HOH A 994 2.11 REMARK 500 OE2 GLU A 19 O HOH A 1032 2.12 REMARK 500 O HOH B 738 O HOH B 937 2.12 REMARK 500 O HOH A 876 O HOH A 1021 2.12 REMARK 500 OD1 ASP A 254 O HOH A 1019 2.12 REMARK 500 O HOH A 1015 O HOH A 1036 2.12 REMARK 500 O HOH A 700 O HOH A 963 2.12 REMARK 500 O HOH B 665 O HOH B 1061 2.13 REMARK 500 O HOH A 877 O HOH A 1021 2.13 REMARK 500 O HOH A 624 O HOH A 965 2.14 REMARK 500 O HOH B 662 O HOH B 927 2.15 REMARK 500 O HOH A 829 O HOH A 1049 2.15 REMARK 500 O HOH A 871 O HOH A 904 2.15 REMARK 500 O HOH B 637 O HOH B 988 2.15 REMARK 500 NE ARG A 63 O HOH A 1007 2.15 REMARK 500 O HOH A 1009 O HOH A 1071 2.15 REMARK 500 O HOH B 637 O HOH B 894 2.15 REMARK 500 O HOH A 766 O HOH A 999 2.16 REMARK 500 NH1 ARG A 258 O HOH A 1022 2.16 REMARK 500 O HOH B 881 O HOH B 1057 2.16 REMARK 500 O HOH B 717 O HOH B 974 2.17 REMARK 500 O HOH A 863 O HOH A 1049 2.17 REMARK 500 NH1 ARG B 343 O HOH B 1016 2.17 REMARK 500 O HOH A 587 O HOH A 1055 2.17 REMARK 500 O HOH B 858 O HOH B 989 2.17 REMARK 500 O HOH B 862 O HOH B 1009 2.17 REMARK 500 O HOH B 693 O HOH B 980 2.17 REMARK 500 O HOH A 768 O HOH A 999 2.18 REMARK 500 O HOH B 946 O HOH B 991 2.18 REMARK 500 O HOH B 932 O HOH B 969 2.18 REMARK 500 O HOH B 815 O HOH B 926 2.18 REMARK 500 O HOH A 743 O HOH A 945 2.18 REMARK 500 O TYR A 131 O HOH A 992 2.18 REMARK 500 O HOH B 859 O HOH B 1040 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 976 O HOH B 546 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 226 59.67 -90.60 REMARK 500 LEU A 234 -159.07 -113.82 REMARK 500 LEU B 234 -158.57 -113.79 REMARK 500 VAL B 349 -0.59 -143.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC109739 RELATED DB: TARGETTRACK DBREF 4RXK A 1 369 UNP Q0H2X1 Q0H2X1_9ACTO 1 369 DBREF 4RXK B 1 369 UNP Q0H2X1 Q0H2X1_9ACTO 1 369 SEQADV 4RXK SER A -2 UNP Q0H2X1 EXPRESSION TAG SEQADV 4RXK ASN A -1 UNP Q0H2X1 EXPRESSION TAG SEQADV 4RXK ALA A 0 UNP Q0H2X1 EXPRESSION TAG SEQADV 4RXK SER B -2 UNP Q0H2X1 EXPRESSION TAG SEQADV 4RXK ASN B -1 UNP Q0H2X1 EXPRESSION TAG SEQADV 4RXK ALA B 0 UNP Q0H2X1 EXPRESSION TAG SEQRES 1 A 372 SER ASN ALA MSE ILE PRO LEU PHE LYS VAL ALA VAL SER SEQRES 2 A 372 PRO THR ALA LEU ASP ARG VAL ALA GLU VAL PHE ALA SER SEQRES 3 A 372 GLY TYR LEU GLY GLN GLY PRO ARG VAL ALA GLU PHE GLU SEQRES 4 A 372 SER ALA LEU ALA ALA ARG LEU GLY ASN PRO ARG VAL VAL SEQRES 5 A 372 SER VAL HIS SER GLY THR SER GLY LEU CYS LEU ALA LEU SEQRES 6 A 372 ARG LEU LEU ASP ALA PRO GLU GLU ARG ASP GLU VAL LEU SEQRES 7 A 372 SER THR PRO LEU THR PHE GLU ALA THR ASN TRP ALA ILE SEQRES 8 A 372 LEU ALA ASP GLY ARG ARG ILE THR TRP VAL ASP VAL ASP SEQRES 9 A 372 PRO ALA THR LEU THR MSE ASP LEU ASP ASP LEU GLU ARG SEQRES 10 A 372 LYS ILE SER PRO ALA THR ARG ALA ILE ILE VAL VAL HIS SEQRES 11 A 372 TRP THR GLY TYR PRO VAL ASP LEU ASP ARG LEU ALA GLY SEQRES 12 A 372 ILE LEU ASP ARG ALA GLU ARG GLU HIS GLY PHE ARG PRO SEQRES 13 A 372 ALA VAL ILE GLU ASP CYS ALA HIS ALA TRP GLY ALA SER SEQRES 14 A 372 TYR ARG GLY VAL PRO LEU GLY SER HIS GLY ASN MSE CYS SEQRES 15 A 372 VAL PHE SER PHE GLN ALA LEU LLP HIS LEU THR CYS GLY SEQRES 16 A 372 ASP GLY GLY LEU LEU THR LEU PRO GLY ASP GLU LEU HIS SEQRES 17 A 372 GLU ARG ALA MSE LEU ARG ARG PHE TYR GLY ILE ASP ARG SEQRES 18 A 372 THR ALA ASP ARG LEU ARG GLY ALA TYR ASP VAL ALA GLU SEQRES 19 A 372 TRP GLY LEU LYS TRP HIS MSE THR ASP LEU ASN ALA ALA SEQRES 20 A 372 ILE GLY LEU ALA ASN LEU GLU THR VAL ASP GLU GLN LEU SEQRES 21 A 372 ARG LEU HIS ARG GLU ASN ALA ALA PHE TYR ASP LYS GLU SEQRES 22 A 372 LEU THR GLY VAL PRO GLY LEU GLU LEU LEU GLN ARG SER SEQRES 23 A 372 PRO ASP ARG GLU GLY SER PHE TYR VAL TYR ASP VAL LYS SEQRES 24 A 372 VAL ASP ASP ARG PRO ALA PHE HIS ARG LYS MSE GLU ALA SEQRES 25 A 372 ALA GLY ILE MSE ALA GLY LEU VAL SER ARG ARG ASN ASP SEQRES 26 A 372 GLU HIS SER CYS VAL ALA HIS LEU ARG THR SER LEU PRO SEQRES 27 A 372 GLY LEU ASP SER VAL TYR ASP ARG MSE VAL SER LEU PRO SEQRES 28 A 372 VAL GLY TRP TRP LEU THR GLU GLN ASP ARG GLU HIS VAL SEQRES 29 A 372 VAL ALA THR ILE ARG SER GLY TRP SEQRES 1 B 372 SER ASN ALA MSE ILE PRO LEU PHE LYS VAL ALA VAL SER SEQRES 2 B 372 PRO THR ALA LEU ASP ARG VAL ALA GLU VAL PHE ALA SER SEQRES 3 B 372 GLY TYR LEU GLY GLN GLY PRO ARG VAL ALA GLU PHE GLU SEQRES 4 B 372 SER ALA LEU ALA ALA ARG LEU GLY ASN PRO ARG VAL VAL SEQRES 5 B 372 SER VAL HIS SER GLY THR SER GLY LEU CYS LEU ALA LEU SEQRES 6 B 372 ARG LEU LEU ASP ALA PRO GLU GLU ARG ASP GLU VAL LEU SEQRES 7 B 372 SER THR PRO LEU THR PHE GLU ALA THR ASN TRP ALA ILE SEQRES 8 B 372 LEU ALA ASP GLY ARG ARG ILE THR TRP VAL ASP VAL ASP SEQRES 9 B 372 PRO ALA THR LEU THR MSE ASP LEU ASP ASP LEU GLU ARG SEQRES 10 B 372 LYS ILE SER PRO ALA THR ARG ALA ILE ILE VAL VAL HIS SEQRES 11 B 372 TRP THR GLY TYR PRO VAL ASP LEU ASP ARG LEU ALA GLY SEQRES 12 B 372 ILE LEU ASP ARG ALA GLU ARG GLU HIS GLY PHE ARG PRO SEQRES 13 B 372 ALA VAL ILE GLU ASP CYS ALA HIS ALA TRP GLY ALA SER SEQRES 14 B 372 TYR ARG GLY VAL PRO LEU GLY SER HIS GLY ASN MSE CYS SEQRES 15 B 372 VAL PHE SER PHE GLN ALA LEU LLP HIS LEU THR CYS GLY SEQRES 16 B 372 ASP GLY GLY LEU LEU THR LEU PRO GLY ASP GLU LEU HIS SEQRES 17 B 372 GLU ARG ALA MSE LEU ARG ARG PHE TYR GLY ILE ASP ARG SEQRES 18 B 372 THR ALA ASP ARG LEU ARG GLY ALA TYR ASP VAL ALA GLU SEQRES 19 B 372 TRP GLY LEU LYS TRP HIS MSE THR ASP LEU ASN ALA ALA SEQRES 20 B 372 ILE GLY LEU ALA ASN LEU GLU THR VAL ASP GLU GLN LEU SEQRES 21 B 372 ARG LEU HIS ARG GLU ASN ALA ALA PHE TYR ASP LYS GLU SEQRES 22 B 372 LEU THR GLY VAL PRO GLY LEU GLU LEU LEU GLN ARG SER SEQRES 23 B 372 PRO ASP ARG GLU GLY SER PHE TYR VAL TYR ASP VAL LYS SEQRES 24 B 372 VAL ASP ASP ARG PRO ALA PHE HIS ARG LYS MSE GLU ALA SEQRES 25 B 372 ALA GLY ILE MSE ALA GLY LEU VAL SER ARG ARG ASN ASP SEQRES 26 B 372 GLU HIS SER CYS VAL ALA HIS LEU ARG THR SER LEU PRO SEQRES 27 B 372 GLY LEU ASP SER VAL TYR ASP ARG MSE VAL SER LEU PRO SEQRES 28 B 372 VAL GLY TRP TRP LEU THR GLU GLN ASP ARG GLU HIS VAL SEQRES 29 B 372 VAL ALA THR ILE ARG SER GLY TRP MODRES 4RXK MSE A 1 MET SELENOMETHIONINE MODRES 4RXK MSE A 107 MET SELENOMETHIONINE MODRES 4RXK MSE A 178 MET SELENOMETHIONINE MODRES 4RXK LLP A 187 LYS MODRES 4RXK MSE A 209 MET SELENOMETHIONINE MODRES 4RXK MSE A 238 MET SELENOMETHIONINE MODRES 4RXK MSE A 307 MET SELENOMETHIONINE MODRES 4RXK MSE A 313 MET SELENOMETHIONINE MODRES 4RXK MSE A 344 MET SELENOMETHIONINE MODRES 4RXK MSE B 1 MET SELENOMETHIONINE MODRES 4RXK MSE B 107 MET SELENOMETHIONINE MODRES 4RXK MSE B 178 MET SELENOMETHIONINE MODRES 4RXK LLP B 187 LYS MODRES 4RXK MSE B 209 MET SELENOMETHIONINE MODRES 4RXK MSE B 238 MET SELENOMETHIONINE MODRES 4RXK MSE B 307 MET SELENOMETHIONINE MODRES 4RXK MSE B 313 MET SELENOMETHIONINE MODRES 4RXK MSE B 344 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 107 8 HET MSE A 178 8 HET LLP A 187 24 HET MSE A 209 16 HET MSE A 238 8 HET MSE A 307 8 HET MSE A 313 8 HET MSE A 344 8 HET MSE B 1 8 HET MSE B 107 8 HET MSE B 178 8 HET LLP B 187 24 HET MSE B 209 16 HET MSE B 238 8 HET MSE B 307 8 HET MSE B 313 8 HET MSE B 344 8 HET GOL A 401 6 HET GOL A 402 6 HET PLP A 403 16 HET GOL B 401 6 HET GOL B 402 6 HET PLP B 403 16 HETNAM MSE SELENOMETHIONINE HETNAM LLP 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 LLP PYRIDIN-4-YLMETHANE) HETNAM GOL GLYCEROL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 1 LLP 2(C14 H24 N3 O7 P) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 PLP 2(C8 H10 N O6 P) FORMUL 9 HOH *1158(H2 O) HELIX 1 1 THR A 12 GLY A 24 1 13 HELIX 2 2 GLY A 29 GLY A 44 1 16 HELIX 3 3 SER A 53 LEU A 64 1 12 HELIX 4 4 PHE A 81 ASP A 91 1 11 HELIX 5 5 ASP A 108 ILE A 116 1 9 HELIX 6 6 TRP A 128 TYR A 131 5 4 HELIX 7 7 ASP A 134 GLY A 150 1 17 HELIX 8 8 GLY A 201 ARG A 212 1 12 HELIX 9 9 ASP A 221 GLY A 225 5 5 HELIX 10 10 THR A 239 LEU A 271 1 33 HELIX 11 11 ASP A 299 ALA A 310 1 12 HELIX 12 12 ARG A 320 ARG A 331 5 12 HELIX 13 13 LEU A 334 ASP A 342 1 9 HELIX 14 14 THR A 354 SER A 367 1 14 HELIX 15 15 THR B 12 GLY B 24 1 13 HELIX 16 16 GLY B 29 GLY B 44 1 16 HELIX 17 17 SER B 53 LEU B 64 1 12 HELIX 18 18 PHE B 81 ASP B 91 1 11 HELIX 19 19 ASP B 108 ILE B 116 1 9 HELIX 20 20 TRP B 128 TYR B 131 5 4 HELIX 21 21 ASP B 134 GLY B 150 1 17 HELIX 22 22 GLY B 201 ARG B 212 1 12 HELIX 23 23 ASP B 221 GLY B 225 5 5 HELIX 24 24 THR B 239 LEU B 271 1 33 HELIX 25 25 ASP B 299 ALA B 310 1 12 HELIX 26 26 ARG B 320 ARG B 331 5 12 HELIX 27 27 LEU B 334 ASP B 342 1 9 HELIX 28 28 THR B 354 SER B 367 1 14 SHEET 1 A 7 VAL A 48 VAL A 51 0 SHEET 2 A 7 GLY A 195 THR A 198 -1 O LEU A 197 N VAL A 49 SHEET 3 A 7 MSE A 178 SER A 182 -1 N PHE A 181 O LEU A 196 SHEET 4 A 7 ALA A 154 ASP A 158 1 N GLU A 157 O MSE A 178 SHEET 5 A 7 THR A 120 VAL A 126 1 N VAL A 125 O ASP A 158 SHEET 6 A 7 GLU A 73 SER A 76 1 N GLU A 73 O ARG A 121 SHEET 7 A 7 ARG A 94 TRP A 97 1 O ARG A 94 N VAL A 74 SHEET 1 B 3 VAL A 170 PRO A 171 0 SHEET 2 B 3 SER A 166 TYR A 167 -1 N TYR A 167 O VAL A 170 SHEET 3 B 3 ARG A 286 GLU A 287 -1 O GLU A 287 N SER A 166 SHEET 1 C 3 LEU A 277 LEU A 279 0 SHEET 2 C 3 TYR A 293 VAL A 297 -1 O LYS A 296 N GLU A 278 SHEET 3 C 3 MSE A 344 LEU A 347 -1 O LEU A 347 N TYR A 293 SHEET 1 D 7 VAL B 48 VAL B 51 0 SHEET 2 D 7 GLY B 195 THR B 198 -1 O LEU B 197 N VAL B 49 SHEET 3 D 7 MSE B 178 SER B 182 -1 N PHE B 181 O LEU B 196 SHEET 4 D 7 ALA B 154 ASP B 158 1 N GLU B 157 O MSE B 178 SHEET 5 D 7 THR B 120 VAL B 126 1 N VAL B 125 O ASP B 158 SHEET 6 D 7 GLU B 73 SER B 76 1 N GLU B 73 O ARG B 121 SHEET 7 D 7 ARG B 94 TRP B 97 1 O ARG B 94 N VAL B 74 SHEET 1 E 3 VAL B 170 PRO B 171 0 SHEET 2 E 3 SER B 166 TYR B 167 -1 N TYR B 167 O VAL B 170 SHEET 3 E 3 ARG B 286 GLU B 287 -1 O GLU B 287 N SER B 166 SHEET 1 F 3 LEU B 277 LEU B 279 0 SHEET 2 F 3 TYR B 293 VAL B 297 -1 O LYS B 296 N GLU B 278 SHEET 3 F 3 MSE B 344 LEU B 347 -1 O LEU B 347 N TYR B 293 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C THR A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ASP A 108 1555 1555 1.33 LINK C ASN A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N CYS A 179 1555 1555 1.33 LINK C LEU A 186 N ALLP A 187 1555 1555 1.33 LINK C ALLP A 187 N HIS A 188 1555 1555 1.33 LINK C ALA A 208 N AMSE A 209 1555 1555 1.33 LINK C ALA A 208 N BMSE A 209 1555 1555 1.33 LINK C AMSE A 209 N LEU A 210 1555 1555 1.33 LINK C BMSE A 209 N LEU A 210 1555 1555 1.33 LINK C HIS A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N THR A 239 1555 1555 1.33 LINK C LYS A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N GLU A 308 1555 1555 1.33 LINK C ILE A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N ALA A 314 1555 1555 1.33 LINK C ARG A 343 N MSE A 344 1555 1555 1.32 LINK C MSE A 344 N AVAL A 345 1555 1555 1.33 LINK C MSE A 344 N BVAL A 345 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C THR B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N ASP B 108 1555 1555 1.33 LINK C ASN B 177 N MSE B 178 1555 1555 1.32 LINK C MSE B 178 N CYS B 179 1555 1555 1.33 LINK C LEU B 186 N ALLP B 187 1555 1555 1.33 LINK C ALLP B 187 N HIS B 188 1555 1555 1.33 LINK C ALA B 208 N AMSE B 209 1555 1555 1.33 LINK C ALA B 208 N BMSE B 209 1555 1555 1.33 LINK C AMSE B 209 N LEU B 210 1555 1555 1.33 LINK C BMSE B 209 N LEU B 210 1555 1555 1.33 LINK C HIS B 237 N MSE B 238 1555 1555 1.33 LINK C MSE B 238 N THR B 239 1555 1555 1.33 LINK C LYS B 306 N MSE B 307 1555 1555 1.33 LINK C MSE B 307 N AGLU B 308 1555 1555 1.33 LINK C MSE B 307 N BGLU B 308 1555 1555 1.33 LINK C ILE B 312 N MSE B 313 1555 1555 1.33 LINK C MSE B 313 N ALA B 314 1555 1555 1.33 LINK C AARG B 343 N MSE B 344 1555 1555 1.33 LINK C BARG B 343 N MSE B 344 1555 1555 1.33 LINK C MSE B 344 N AVAL B 345 1555 1555 1.33 LINK C MSE B 344 N BVAL B 345 1555 1555 1.33 SITE 1 AC1 6 ALA A 154 VAL A 155 ASN A 177 MSE A 178 SITE 2 AC1 6 HOH A 570 HOH A1042 SITE 1 AC2 7 PRO A 275 ASP A 299 GLY A 368 TRP A 369 SITE 2 AC2 7 HOH A 630 HOH A 769 HOH A1025 SITE 1 AC3 23 SER A 53 GLY A 54 THR A 55 THR A 80 SITE 2 AC3 23 PHE A 81 THR A 84 ASP A 158 ALA A 160 SITE 3 AC3 23 HIS A 161 SER A 182 GLN A 184 LLP A 187 SITE 4 AC3 23 HOH A 502 HOH A1064 HOH A1065 HOH A1066 SITE 5 AC3 23 HOH A1067 HOH A1068 HOH A1069 HOH A1070 SITE 6 AC3 23 HOH A1071 TYR B 214 LYS B 235 SITE 1 AC4 6 VAL B 155 GLY B 176 ASN B 177 MSE B 178 SITE 2 AC4 6 HOH B 602 HOH B 895 SITE 1 AC5 8 PRO B 275 GLY B 368 TRP B 369 HOH B 591 SITE 2 AC5 8 HOH B 745 HOH B 876 HOH B 906 HOH B 921 SITE 1 AC6 24 TYR A 214 LYS A 235 SER B 53 GLY B 54 SITE 2 AC6 24 THR B 55 THR B 80 PHE B 81 THR B 84 SITE 3 AC6 24 ASP B 158 ALA B 160 HIS B 161 SER B 182 SITE 4 AC6 24 GLN B 184 LLP B 187 HOH B 505 HOH B 868 SITE 5 AC6 24 HOH B1005 HOH B1079 HOH B1080 HOH B1081 SITE 6 AC6 24 HOH B1082 HOH B1083 HOH B1084 HOH B1085 CRYST1 204.287 73.060 58.634 90.00 103.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004895 0.000000 0.001191 0.00000 SCALE2 0.000000 0.013687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017553 0.00000