HEADER TRANSPORT PROTEIN 12-DEC-14 4RY1 TITLE CRYSTAL STRUCTURE OF PERIPLASMIC SOLUTE BINDING PROTEIN ECA2210 FROM TITLE 2 PECTOBACTERIUM ATROSEPTICUM SCRI1043, TARGET EFI-510858 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-439; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043 / ATCC BAA-672; SOURCE 5 GENE: ECA2210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SUGAR TRANSPORTER, ABC-TYPE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.CHAMALA,J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR, AUTHOR 3 B.HILLERICH,R.D.SIEDEL,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 3 28-FEB-24 4RY1 1 REMARK SEQADV REVDAT 2 24-JAN-18 4RY1 1 AUTHOR REVDAT 1 24-DEC-14 4RY1 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA, JRNL AUTH 2 A.SCOTT GLENN,J.D.ATTONITO,S.CHOWDHURY,J.LAFLEUR, JRNL AUTH 3 B.HILLERICH,L.L.MORISCO,S.R.WASSERMAN,R.D.SIEDEL,J.LOVE, JRNL AUTH 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PERIPLASMIC SOLUTE BINDING PROTEIN JRNL TITL 2 ECA2210 FROM PECTOBACTERIUM ATROSEPTICUM, TARGET EFI-510858 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 155400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 421 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 1014 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6763 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6402 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9189 ; 1.461 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14793 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 869 ; 5.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;36.634 ;25.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1148 ;14.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.828 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 982 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7805 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1530 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3378 ; 3.875 ; 2.486 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3375 ; 3.871 ; 2.482 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4245 ; 3.906 ; 4.187 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4246 ; 3.905 ; 4.189 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 7.194 ; 3.131 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3386 ; 7.193 ; 3.131 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4933 ; 6.876 ; 4.902 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8958 ; 6.030 ;12.800 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8959 ; 6.030 ;12.801 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 13165 ; 3.134 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 232 ;29.248 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 13777 ;15.038 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 160376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM REMARK 280 DTT); RESERVOIR: 0.085 M TRIS-HCL, PH 8.5, 0.17 M SODIUM ACETATE, REMARK 280 25% PEG3350, 15% (V/V) GLYCEROL; CRYOPROTECTION: RESERVOIR REMARK 280 SOLUTION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.83450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 29 REMARK 465 SER B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 399 CG CD OE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 439 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 264 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 68 122.66 170.75 REMARK 500 SER A 339 -32.35 -131.39 REMARK 500 SER B 339 -31.91 -132.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510858 RELATED DB: TARGETTRACK DBREF 4RY1 A 31 439 UNP Q6D532 Q6D532_PECAS 31 439 DBREF 4RY1 B 31 439 UNP Q6D532 Q6D532_PECAS 31 439 SEQADV 4RY1 SER A 29 UNP Q6D532 EXPRESSION TAG SEQADV 4RY1 MET A 30 UNP Q6D532 EXPRESSION TAG SEQADV 4RY1 SER B 29 UNP Q6D532 EXPRESSION TAG SEQADV 4RY1 MET B 30 UNP Q6D532 EXPRESSION TAG SEQRES 1 A 411 SER MET ALA GLU ILE ARG ILE SER TRP TRP GLY GLY ASN SEQRES 2 A 411 GLN ARG HIS GLU ALA THR LEU ALA ALA ILE ASN ALA PHE SEQRES 3 A 411 GLN LYS ALA ASN PRO THR ILE THR VAL LYS ALA GLU TYR SEQRES 4 A 411 ALA GLY TRP ASP GLY TYR LEU SER ARG LEU SER THR GLN SEQRES 5 A 411 ILE ALA GLY GLY GLN GLU PRO ASP VAL MET ARG ILE ASP SEQRES 6 A 411 TRP ASN TRP LEU PRO GLN PHE SER ARG ASN GLY ASP GLY SEQRES 7 A 411 PHE TYR ASP LEU ASN LYS GLN LYS ASP ILE LEU GLY LEU SEQRES 8 A 411 GLY ASP PHE PRO PRO ASN ALA LEU LYS THR ALA ASP VAL SEQRES 9 A 411 LYS GLY LYS LEU GLN GLY LEU PRO ILE SER MET THR SER SEQRES 10 A 411 ARG SER MET ILE TYR ASN LYS THR THR TRP ASP ASN ALA SEQRES 11 A 411 GLY VAL ALA TYR PRO LYS THR TRP ASP GLU LEU PHE ALA SEQRES 12 A 411 ALA GLY PRO VAL PHE LYS GLN LYS LEU GLY ASP SER TYR SEQRES 13 A 411 TYR PRO LEU GLY VAL ALA GLN GLY ALA SER ASP VAL LEU SEQRES 14 A 411 ASP ILE LEU THR LEU GLY ARG SER TYR MET ALA GLN LYS SEQRES 15 A 411 TYR GLY ILE ASP MET ILE ASP GLU LYS LYS GLN SER ILE SEQRES 16 A 411 ALA TYR SER ARG ASP GLN VAL ARG GLU LEU PHE GLY PHE SEQRES 17 A 411 TYR LYS LYS LEU VAL ASP SER HIS VAL ILE PRO ASP GLN SEQRES 18 A 411 ARG TYR PHE SER SER PHE GLY ARG THR ASN VAL TYR GLU SEQRES 19 A 411 ILE ARG PRO TRP ILE ASN GLY GLU LEU ALA GLY MET TYR SEQRES 20 A 411 LEU TRP ASP SER ALA ILE TYR THR TYR SER SER ASN MET SEQRES 21 A 411 PRO LYS ASP ALA VAL LEU GLU THR GLY PRO PHE ILE THR SEQRES 22 A 411 ILE PRO GLY ALA LYS ASP SER GLY LEU THR SER LYS PRO SEQRES 23 A 411 SER SER LEU PHE ALA ILE SER LYS ASN SER LYS HIS PRO SEQRES 24 A 411 LYS GLU ALA ALA MET LEU MET ASN PHE MET LEU SER ASN SEQRES 25 A 411 PRO GLU GLY VAL LYS ALA LEU GLY LEU GLN ASN GLY MET SEQRES 26 A 411 PRO ALA ASN PRO LYS ALA GLN LYS LEU LEU GLU ASP ILE SEQRES 27 A 411 GLY VAL ILE ASN PRO GLY ASN LEU LEU ALA ASN ALA TYR SEQRES 28 A 411 ARG ALA ALA ALA ALA GLN PRO GLU SER LYS VAL ALA VAL SEQRES 29 A 411 SER PRO PHE MET GLU ASN GLN GLU LEU VAL GLN LEU TRP SEQRES 30 A 411 THR THR SER LEU GLN LYS LEU ASP TYR GLY ASN GLY GLU SEQRES 31 A 411 VAL ASN LYS VAL ALA ASP ASP PHE LEU SER GLY ALA ASN SEQRES 32 A 411 ARG ILE LEU LYS ARG ALA ILE ARG SEQRES 1 B 411 SER MET ALA GLU ILE ARG ILE SER TRP TRP GLY GLY ASN SEQRES 2 B 411 GLN ARG HIS GLU ALA THR LEU ALA ALA ILE ASN ALA PHE SEQRES 3 B 411 GLN LYS ALA ASN PRO THR ILE THR VAL LYS ALA GLU TYR SEQRES 4 B 411 ALA GLY TRP ASP GLY TYR LEU SER ARG LEU SER THR GLN SEQRES 5 B 411 ILE ALA GLY GLY GLN GLU PRO ASP VAL MET ARG ILE ASP SEQRES 6 B 411 TRP ASN TRP LEU PRO GLN PHE SER ARG ASN GLY ASP GLY SEQRES 7 B 411 PHE TYR ASP LEU ASN LYS GLN LYS ASP ILE LEU GLY LEU SEQRES 8 B 411 GLY ASP PHE PRO PRO ASN ALA LEU LYS THR ALA ASP VAL SEQRES 9 B 411 LYS GLY LYS LEU GLN GLY LEU PRO ILE SER MET THR SER SEQRES 10 B 411 ARG SER MET ILE TYR ASN LYS THR THR TRP ASP ASN ALA SEQRES 11 B 411 GLY VAL ALA TYR PRO LYS THR TRP ASP GLU LEU PHE ALA SEQRES 12 B 411 ALA GLY PRO VAL PHE LYS GLN LYS LEU GLY ASP SER TYR SEQRES 13 B 411 TYR PRO LEU GLY VAL ALA GLN GLY ALA SER ASP VAL LEU SEQRES 14 B 411 ASP ILE LEU THR LEU GLY ARG SER TYR MET ALA GLN LYS SEQRES 15 B 411 TYR GLY ILE ASP MET ILE ASP GLU LYS LYS GLN SER ILE SEQRES 16 B 411 ALA TYR SER ARG ASP GLN VAL ARG GLU LEU PHE GLY PHE SEQRES 17 B 411 TYR LYS LYS LEU VAL ASP SER HIS VAL ILE PRO ASP GLN SEQRES 18 B 411 ARG TYR PHE SER SER PHE GLY ARG THR ASN VAL TYR GLU SEQRES 19 B 411 ILE ARG PRO TRP ILE ASN GLY GLU LEU ALA GLY MET TYR SEQRES 20 B 411 LEU TRP ASP SER ALA ILE TYR THR TYR SER SER ASN MET SEQRES 21 B 411 PRO LYS ASP ALA VAL LEU GLU THR GLY PRO PHE ILE THR SEQRES 22 B 411 ILE PRO GLY ALA LYS ASP SER GLY LEU THR SER LYS PRO SEQRES 23 B 411 SER SER LEU PHE ALA ILE SER LYS ASN SER LYS HIS PRO SEQRES 24 B 411 LYS GLU ALA ALA MET LEU MET ASN PHE MET LEU SER ASN SEQRES 25 B 411 PRO GLU GLY VAL LYS ALA LEU GLY LEU GLN ASN GLY MET SEQRES 26 B 411 PRO ALA ASN PRO LYS ALA GLN LYS LEU LEU GLU ASP ILE SEQRES 27 B 411 GLY VAL ILE ASN PRO GLY ASN LEU LEU ALA ASN ALA TYR SEQRES 28 B 411 ARG ALA ALA ALA ALA GLN PRO GLU SER LYS VAL ALA VAL SEQRES 29 B 411 SER PRO PHE MET GLU ASN GLN GLU LEU VAL GLN LEU TRP SEQRES 30 B 411 THR THR SER LEU GLN LYS LEU ASP TYR GLY ASN GLY GLU SEQRES 31 B 411 VAL ASN LYS VAL ALA ASP ASP PHE LEU SER GLY ALA ASN SEQRES 32 B 411 ARG ILE LEU LYS ARG ALA ILE ARG HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 12 HET ACT A 504 4 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET ACT B 504 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *1014(H2 O) HELIX 1 1 GLY A 40 ASN A 58 1 19 HELIX 2 2 GLY A 72 GLY A 83 1 12 HELIX 3 3 ASP A 93 ASN A 95 5 3 HELIX 4 4 TRP A 96 SER A 101 1 6 HELIX 5 5 ASP A 109 LYS A 112 5 4 HELIX 6 6 GLN A 113 GLY A 118 1 6 HELIX 7 7 LEU A 119 PHE A 122 5 4 HELIX 8 8 PRO A 123 THR A 129 1 7 HELIX 9 9 LYS A 152 GLY A 159 1 8 HELIX 10 10 THR A 165 GLY A 181 1 17 HELIX 11 11 VAL A 196 GLY A 212 1 17 HELIX 12 12 SER A 226 SER A 243 1 18 HELIX 13 13 ASP A 248 SER A 254 1 7 HELIX 14 14 ASN A 259 GLU A 262 5 4 HELIX 15 15 ILE A 263 ASN A 268 1 6 HELIX 16 16 ALA A 280 SER A 286 1 7 HELIX 17 17 HIS A 326 SER A 339 1 14 HELIX 18 18 ASN A 340 GLY A 348 1 9 HELIX 19 19 ASN A 356 ILE A 366 1 11 HELIX 20 20 ASN A 373 GLN A 385 1 13 HELIX 21 21 SER A 393 GLU A 397 5 5 HELIX 22 22 ASN A 398 TYR A 414 1 17 HELIX 23 23 GLU A 418 ILE A 438 1 21 HELIX 24 24 GLY B 40 ASN B 58 1 19 HELIX 25 25 GLY B 72 GLY B 83 1 12 HELIX 26 26 ASP B 93 ASN B 95 5 3 HELIX 27 27 TRP B 96 SER B 101 1 6 HELIX 28 28 ASP B 109 LYS B 112 5 4 HELIX 29 29 GLN B 113 GLY B 118 1 6 HELIX 30 30 LEU B 119 PHE B 122 5 4 HELIX 31 31 PRO B 123 THR B 129 1 7 HELIX 32 32 LYS B 152 GLY B 159 1 8 HELIX 33 33 THR B 165 GLY B 181 1 17 HELIX 34 34 VAL B 196 GLY B 212 1 17 HELIX 35 35 SER B 226 SER B 243 1 18 HELIX 36 36 ASP B 248 SER B 254 1 7 HELIX 37 37 ASN B 259 GLU B 262 5 4 HELIX 38 38 ILE B 263 ASN B 268 1 6 HELIX 39 39 ALA B 280 SER B 286 1 7 HELIX 40 40 HIS B 326 SER B 339 1 14 HELIX 41 41 ASN B 340 GLY B 348 1 9 HELIX 42 42 ASN B 356 ILE B 366 1 11 HELIX 43 43 ASN B 373 ALA B 384 1 12 HELIX 44 44 SER B 393 GLU B 397 5 5 HELIX 45 45 ASN B 398 TYR B 414 1 17 HELIX 46 46 GLU B 418 ILE B 438 1 21 SHEET 1 A 6 ILE A 61 ALA A 68 0 SHEET 2 A 6 ALA A 31 TRP A 38 1 N ALA A 31 O THR A 62 SHEET 3 A 6 VAL A 89 ILE A 92 1 O VAL A 89 N SER A 36 SHEET 4 A 6 SER A 312 ILE A 320 -1 O ALA A 319 N MET A 90 SHEET 5 A 6 LEU A 139 ASN A 151 -1 N SER A 142 O SER A 315 SHEET 6 A 6 GLY A 273 TRP A 277 -1 O MET A 274 N ILE A 149 SHEET 1 B 6 ILE A 61 ALA A 68 0 SHEET 2 B 6 ALA A 31 TRP A 38 1 N ALA A 31 O THR A 62 SHEET 3 B 6 VAL A 89 ILE A 92 1 O VAL A 89 N SER A 36 SHEET 4 B 6 SER A 312 ILE A 320 -1 O ALA A 319 N MET A 90 SHEET 5 B 6 LEU A 139 ASN A 151 -1 N SER A 142 O SER A 315 SHEET 6 B 6 LEU A 294 THR A 296 -1 O GLU A 295 N TYR A 150 SHEET 1 C 2 ASP A 131 VAL A 132 0 SHEET 2 C 2 LYS A 135 LEU A 136 -1 O LYS A 135 N VAL A 132 SHEET 1 D 2 ILE A 216 ASP A 217 0 SHEET 2 D 2 SER A 222 ILE A 223 -1 O SER A 222 N ASP A 217 SHEET 1 E 6 ILE B 61 ALA B 68 0 SHEET 2 E 6 ALA B 31 TRP B 38 1 N ALA B 31 O THR B 62 SHEET 3 E 6 VAL B 89 ILE B 92 1 O VAL B 89 N SER B 36 SHEET 4 E 6 SER B 312 ILE B 320 -1 O LEU B 317 N ILE B 92 SHEET 5 E 6 LEU B 139 ASN B 151 -1 N SER B 142 O SER B 315 SHEET 6 E 6 GLY B 273 TRP B 277 -1 O MET B 274 N ILE B 149 SHEET 1 F 6 ILE B 61 ALA B 68 0 SHEET 2 F 6 ALA B 31 TRP B 38 1 N ALA B 31 O THR B 62 SHEET 3 F 6 VAL B 89 ILE B 92 1 O VAL B 89 N SER B 36 SHEET 4 F 6 SER B 312 ILE B 320 -1 O LEU B 317 N ILE B 92 SHEET 5 F 6 LEU B 139 ASN B 151 -1 N SER B 142 O SER B 315 SHEET 6 F 6 LEU B 294 THR B 296 -1 O GLU B 295 N TYR B 150 SHEET 1 G 2 ASP B 131 VAL B 132 0 SHEET 2 G 2 LYS B 135 LEU B 136 -1 O LYS B 135 N VAL B 132 SHEET 1 H 2 ILE B 216 ASP B 217 0 SHEET 2 H 2 SER B 222 ILE B 223 -1 O SER B 222 N ASP B 217 SITE 1 AC1 7 ASP A 93 SER A 279 LYS A 313 SER A 315 SITE 2 AC1 7 HOH A 642 HOH A 699 HOH A 983 SITE 1 AC2 5 LYS A 152 ASP A 156 ALA A 161 TYR A 162 SITE 2 AC2 5 GLU A 295 SITE 1 AC3 8 MET A 148 SER A 205 TYR A 275 PRO A 298 SITE 2 AC3 8 PHE A 299 ILE A 300 HOH A 670 HOH A 822 SITE 1 AC4 6 TRP A 38 ARG A 43 THR A 283 HOH A 699 SITE 2 AC4 6 HOH A 800 HOH A 906 SITE 1 AC5 7 ASP B 93 SER B 279 LYS B 313 SER B 315 SITE 2 AC5 7 HOH B 638 HOH B 642 HOH B 995 SITE 1 AC6 4 LYS B 152 ASP B 156 TYR B 162 GLU B 295 SITE 1 AC7 7 MET B 148 SER B 205 TYR B 275 PRO B 298 SITE 2 AC7 7 PHE B 299 ILE B 300 HOH B 666 SITE 1 AC8 6 TRP B 38 ARG B 43 THR B 283 HOH B 638 SITE 2 AC8 6 HOH B 714 HOH B 977 CRYST1 44.751 93.669 99.148 90.00 90.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022346 0.000000 0.000073 0.00000 SCALE2 0.000000 0.010676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010086 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.999998 0.000383 -0.001975 -0.05922 1 MTRIX2 2 0.000377 -0.999995 -0.002994 52.65728 1 MTRIX3 2 -0.001976 0.002993 -0.999994 49.51242 1